Abstract
Polymerase chain reaction (PCR) has been used with increasing frequency to diagnose infectious and genetic diseases. In this study, the effects of heparin on PCR were investigated, because heparinized blood may sometimes be used in PCR studies. HLA‐DQA1 gene amplification was used as a model. PCR was clearly interfered with when heparinized blood was used as a source of template DNA, and the degree of interference was affected by the following three factors; (1) type of Taq DNA polymerase; (2) leukocyte count in blood; and (3) concentration of heparin contained. When additional tests were conducted with additions of definite heparin concentrations to a PCR reaction mixture, specimens with large amounts of DNA tended to exhibit less interference by heparin. The addition of ≥ 0.1 to 0.0016 U of heparin per reaction mixture (50 μl) suppressed DNA amplification in a dose‐dependent fashion. We therefore concluded that much care should be taken when heparinized blood is used as a PCR material. J. Clin. Lab. Anal. 13:133–140, 1999. © 1999 Wiley‐Liss, Inc.
Keywords: anticoagulant, heparin, PCR, genetic analysis, Taq DNA polymerase
REFERENCES
- 1. Sambrook J, Fritsch EF, Manitas T. Isolation of high‐molecular‐weight DNA from mammalian cells In: Sambrook J, Fritsch EF, Manitas T, editors. Molecular cloning, a laboratory manual, 2nd edition Cold Spring Harbor Laboratories Press; 1989. p 9.14–9.23. [Google Scholar]
- 2. Gustafson S, Proper JA, Bowie EJW, Sommer SS. Parameters affecting the yield of DNA from human blood. Anal Biochem 1987;165:294–299. Medline [DOI] [PubMed] [Google Scholar]
- 3. Maeda M, Murayama N, Ishii N, et al. A simple and rapid method for HLA‐DQA1 genotyping by digestion of PCR‐amplified DNA with allele specific restriction endonucleases. Tissue Antigens 1989;34:290–298. Medline [DOI] [PubMed] [Google Scholar]
- 4. Yokota M, Tatsumi N, Tsuda I, Yano I. DNA extraction and amplification from Giemsa‐stained blood smears. J Clin Lab Anal 1995;9:387–391. Medline [DOI] [PubMed] [Google Scholar]
- 5. Beutler E, Gelbalt T, Kuhl W. Interference of heparin with the polymerase chain reaction. Biotechniques 1990;9:166 Medline [PubMed] [Google Scholar]
- 6. Holodniy M, Kim S, Katzenstein D, Konrad M, Groves E, Merigan TC. Inhibition of human immunodeficiency virus gene amplification by heparin. J Clin Microbiol 1991;4:676–679. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7. Rodén L, Ananth S, Campbell P, et al. Heparin — an introduction. In: Lane DA, Björk I, Lindahl U, editors. Heparin and related polysaccharides: advances in experimental medicine and biology, volume 313 New York: Plenum Press; 1992. p 1–19. [DOI] [PubMed] [Google Scholar]
- 8. Hemker HC, Béguin S. The mode of action of heparins in vitro and in vivo In: Lane DA, Björk I, Lindahl U, editors. Heparin and related polysaccharides: advances in experimental medicine and biology, volume 313 New York: Plenum Press; 1992. p 221–230. [DOI] [PubMed] [Google Scholar]
