Abstract
Molecular analysis of isolated single cells is a powerful tool for clarifying issues of cell origin and clonality. Previous reports have described PCR amplifications from total DNA and RNA extracted from archival bone marrow and peripheral blood smears and have also shown the feasibility of amplifications from single cells, microdissected from stained histological sections. In this study, a method is described for performing PCR from morphologically defined single cells isolated from archival May‐Gruenwald‐Giemsa‐stained bone‐marrow and blood smears. Using three DNA extraction procedures, the organic lysis showed reproducible high efficiencies of amplifications. With this method, we were able to amplify long range amplicons up to 14.5 kb from mitochondrial DNA as well as PCR products of conventional length. The usability of such products for molecular diagnosis is demonstrated by restriction fragment length polymorphism (RFLP)characterization of a mitochondrial disorder. In conclusion, this method has the power to perform molecular diagnosis and characterization of diseases on the single cell level, and should provide valuable information to aid disease treatment and prognosis of hematological disorders. J. Clin. Lab. Anal. 18:176–181, 2004. © 2004 Wiley‐Liss, Inc.
Keywords: single cell PCR, bone marrow, nuclear DNA, mtDNA, amplification
REFERENCES
- 1. Becker I, Becker KF, Rohrl MH, Hofler H. Laser‐assisted preparation of single cells from stained histological slides for gene analysis. Histochem Cell Biol 1997;108:447–451. [DOI] [PubMed] [Google Scholar]
- 2. Gravel S, Delsol G, Al Saati T. Single‐cell analysis of the t(14;18)(q32;q21) chromosomal translocation in Hodgkin's disease demonstrates the absence of this translocation in neoplastic Hodgkin and Reed‐Sternberg cells. Blood 1998;91:2866–2874. [PubMed] [Google Scholar]
- 3. Kuppers R, Zhao M, Hansmann ML, Rajewsky K. Tracing B cell development in human germinal centers by molecular analysis of single cells picked from histological sections. EMBO J 1993;12:4955–4967. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4. Roehrl MH, Becker KF, Becker I, Hofler H. Efficiency of single‐cell polymerase chain reaction from stained histologic slides and integrity of DNA in archival tissue. Diagn Mol Pathol 1997;6:292–297. [DOI] [PubMed] [Google Scholar]
- 5. Fey MF, Pilkington SP, Summers C, Wainscot JS. Molecular diagnosis of haematological disorders using DNA from stored bone marrow slides. Br J Haematol 1987;67:489–492. [DOI] [PubMed] [Google Scholar]
- 6. Grunewald K, Lyons J, Hansen‐Hagge TE, Janssen JW, Feichtinger H, Bartram CR. Molecular genetic analysis of DNA obtained from fixed, air dried or paraffin embedded sources. Ann Hematol 1991;62:108–114. [DOI] [PubMed] [Google Scholar]
- 7. Schoch R, Jenisch S, Haferlach T, Muller Ruchholtz W, Gassmann W, Loffler H. Glass slide smears are a suitable source for RT‐PCR‐based analysis of chromosomal aberrations in leukemias. Br J Haematol 1996;92:140–142. [DOI] [PubMed] [Google Scholar]
- 8. Vince A, Poljak M, Seme K. DNA extraction from archival Giemsa‐stained bone‐marrow slides: comparison of six rapid methods. Br J Haematol 1998;101:349–351. [DOI] [PubMed] [Google Scholar]
- 9. Miyagi T, Murakami K, Sawada T, Taguchi H, Miyochi I. A novel single cell PCR assay: detection of human T lymphotropic virus type I DNA in lymphocytes of patients with adult T cell leukemia. Leukemia 1998;12:1645–1650. [DOI] [PubMed] [Google Scholar]
- 10. Shoffner JM, Lott MT, Lezza AM, Seibel P, Ballinger SW, Wallace DC. Myoclonic epilepsy and ragged‐red fibre disease (MERRF) is associated with a mitochondrial DNA tRNA(Lys) mutation. Cell 1990;61:931–937. [DOI] [PubMed] [Google Scholar]
- 11. Zanssen S, Buse G. Successful chemotherapy in a male patient with malignant lymphoma and Leber's hereditary optic neuropathy (LHON). Am J Hematol 2003;72:263–266. [DOI] [PubMed] [Google Scholar]
- 12. DiMauro S. Lessons from mitochondrial DNA mutations. Semin Cell Dev Biol 2001;12:397–405. [DOI] [PubMed] [Google Scholar]
- 13. Gattermann N. From sideroblastic anemia to the role of mitochondrial DNA mutations in myelodysplastic syndromes. Leuk Res 1999;24:141–151. [DOI] [PubMed] [Google Scholar]
- 14. Cheng S, Higuchi R, Stoneking M. Complete mitochondrial genome amplification. Nat Genet 1994;7:350–351. [DOI] [PubMed] [Google Scholar]
- 15. Reynier P, Malthiery Y. Accumulation of deletions in mtDNA during tissue aging: analysis by long PCR. Biochem Biophys Res Commun 1995;217:59–67. [DOI] [PubMed] [Google Scholar]
