Metabolic dependencies and vulnerabilities in leukemia

In this Review, Rashkovan et al. discuss the role of cancer metabolic circuitries feeding anabolism and redox potential in leukemia development and recent progress in translating these important findings to the clinic.

Abstract

Leukemia cell proliferation requires up-regulation and rewiring of metabolic pathways to feed anabolic cell growth. Oncogenic drivers directly and indirectly regulate metabolic pathways, and aberrant metabolism is central not only for leukemia proliferation and survival, but also mediates oncogene addiction with significant implications for the development of targeted therapies. This review explores leukemia metabolic circuitries feeding anabolism, redox potential, and energy required for tumor propagation with an emphasis on emerging therapeutic opportunities.

Tumor cell proliferation is tightly coupled with anabolic cell growth, as each cycle of cell duplication implies a 100% increase in cellular biomass for cell size to be maintained. As a result, activation of anabolic pathways together with the energy and redox potential to feed them are essential components of oncogenic transformation. Moreover, cancer cells do not simply highjack anabolic mechanisms active in highly proliferating normal tissues, but they reorganize these, bypassing cell growth control checkpoints, securing maximum anabolic output, and gaining enhanced protection from oxidative stress. This aberrant nature of cancer metabolic circuitries was first recognized by Otto Warburg when he postulated that tumor tissues have an increased rate of glucose uptake compared with normal tissues and rely primarily on glucose to produce ATP (Warburg et al. 1924; Warburg 1956). While our understanding of cancer metabolism is still developing, altered metabolism is already recognized as a cornerstone mechanism of tumorigenesis, a hallmark of cancer (Hanahan and Weinberg 2011). In addition, tumor metabolism represents a readily druggable molecular space, bringing much interest in targeting metabolic vulnerabilities in cancer. Importantly, major oncogenic drivers broadly active in human leukemia such as MYC and RAS are prime drivers of metabolic rewiring in leukemia. Increased MYC expression is a hallmark of Burkitt's lymphoma and B-cell and T-cell acute lymphoblastic leukemias (ALL) harboring chromosomal translocations placing the MYC locus in the vicinity of the immunoglobulin and T cell receptor loci, respectively (Dalla-Favera et al. 1983; Erikson et al. 1986). In addition, enhancer-driven MYC expression downstream from NOTCH1 is a driver of cell proliferation, growth, and survival in over 60% of T-ALLs with activating mutations in NOTCH1 (Palomero et al. 2006; Herranz et al. 2014) and as regulator of cell proliferation and negative regulator of cell differentiation in acute myeloid leukemia (Zuber et al. 2011). Furthermore, oncogenic MYC expression promotes glycolysis, glutaminolysis, mitochondrial biogenesis, lipid synthesis, and nucleotide biosynthesis (Shim et al. 1997; Osthus et al. 2000; Li et al. 2005; Liu et al. 2008; Wise et al. 2008; Gao et al. 2009; Morrish et al. 2010). MYC expression and activity are modulated by HIF1A and mTORC1 signaling, which are controlled by oxygen and metabolic sensors, thus integrating the anabolic and pro-proliferative effects of MYC with metabolic determinants of cell growth (Zhang et al. 2007; Pourdehnad et al. 2013). Activating mutations in the RAS-MAPK pathway are characteristic of juvenile myelomonocytic leukemia (Stieglitz et al. 2015), but can also be found in ALL and acute myeloid leukemia (AML) (Roberts and Mullighan 2015; Belver and Ferrando 2016; Bullinger et al. 2017). As in the case of MYC, RAS mutations promote glutaminolysis, enhance glucose uptake, and promote a shift to anabolic metabolism by shunting glycolytic intermediates to anabolic pathways and by regulating the activity of rate-limiting enzymes in the nonoxidative arm of the pentose phosphate pathway (PPP) and in hexosamine biosynthesis (Ying et al. 2012; Lyssiotis et al. 2013; Son et al. 2013). Furthermore, RAS-driven cancers scavenge nutrients via increased micropinocytosis and autophagy, which promote tumor growth and proliferation (Bar-Sagi and Feramisco 1986; Guo et al. 2011; Lock et al. 2011; Yang et al. 2011; Commisso et al. 2013). Finally, PTEN, a negative regulator of the PI3K-AKT signaling pathway is frequently mutated and deleted in T-ALL (Palomero et al. 2007), and loss of PTEN results in increased glycolysis, lipid biogenesis, protein translation, and mitochondrial metabolism (Stiles et al. 2004). These oncogene-driven metabolic circuitries and interactions substantiate that metabolic alterations in cancer cells are closely intertwined with the genetic, transcriptional, and epigenetic changes associated with malignant transformation and serve as critical downstream effectors of oncogenic pathways mediating tumor growth. As corollary, oncogene-driven metabolic circuitries constitute important mediators of oncogene addiction, and as such, represent true cancer-specific vulnerabilities, further substantiating their relevance as therapeutic targets. In this review, we discuss the role of cancer metabolic pathways in leukemia development and recent progress in translating these important findings to the clinic.

Glucose as source of energy and anabolic building blocks

Glycolysis converts glucose to pyruvate and yields energy in the form of two molecules of ATP. Ultimately, pyruvate is converted to lactate by aerobic glycolysis or introduced into the tricarboxylic acid (TCA) cycle, which increases energy production by fueling mitochondrial oxidative phosphorylation (Fig. 1). However, and paradoxically, tumor cells frequently prefer the use of pyruvate for aerobic glycolysis over oxidative phosphorylation, despite the availability of oxygen, which results in lower energy yields. B precursor ALL lymphoblasts show up-regulation of genes involved in glycolysis and concomitant down-regulation of TCA cycle genes compared with normal CD34⁺ progenitor cells (Boag et al. 2006). In addition, 2-deoxy-D-glucose (2-DG), a glucose analog and inhibitor of glycolysis, induces apoptosis, supporting a dependence on glycolysis for cell survival (Boag et al. 2006). In agreement, 3-bromo-2-oxopropionate-1-propyl ester (3-BrOP), an inhibitor of hexokinase, the first enzyme in the glycolytic pathway, can deplete the ATP pool in AML and B cell lymphoma cell lines and synergizes with inhibition of mTOR to induce apoptosis (Xu et al. 2005). Furthermore, deletion of Solute Carrier Family 2 Member 1 (SLC2A1), a major glucose transporter in lymphoid cells, induces metabolic reprogramming in favor of catabolism over anabolic metabolism, and blocks cell proliferation, in B-ALL lymphoblasts harboring the BCR-ABL1 tyrosine kinase fusion oncogene (Liu et al. 2014). Moreover, treatment of BCR-ABL1 B-ALL cells with 2-DG increases apoptosis and enhances the antitumor activity of dasatinib, a tyrosine kinase inhibitor, in vivo. Similarly, AML cell lines and primary patient leukemia samples with activating mutations in the FLT3 kinase oncogene are also dependent on glycolysis, and treatment of these cells with 3-BrOP or 2-DG increases the efficacy of tyrosine kinase inhibition with sorafenib (Huang et al. 2016; Ju et al. 2017). However, it should be noted that 2-DG also works as an inhibitor of protein glycosylation and as a result it can impair the transport of active mutant FLT3 and KIT tyrosine receptors to the cell surface, which may contribute to its antileukemic effects (Larrue et al. 2015).

Figure 1.

Glycolysis and pentose phosphate pathway. Catabolically, glycolysis converts glucose to pyruvate ultimately producing lactate, or acetyl-CoA in the TCA cycle for mitochondrial oxidative phosphorylation. Anabolically, glycolysis generates metabolic precursors for serine biosynthesis and supports redox potential and nucleotide biosynthesis via the pentose phosphate pathway. Most leukemias are highly dependent on glycolysis and can be targeted using glycolytic inhibitors.

The preferred use of glycoIysis over oxidative phosphorylation in tumor cells is linked with the role of glycolytic intermediates as important precursors for multiple biosynthetic metabolic routes including serine biosynthesis and the pentose phosphate pathway. In AML, activation of mTORC1 supports protein translation and cell growth and promotes glycolysis and high-glucose flux through the PPP, contributing to glucose addiction (Xu et al. 2003; Tamburini et al. 2009). In addition, marked dependence on oxidative PPP for cell proliferation and survival in AML makes glucose 6 phosphate dehydrogenase (G6PD), the first and rate-limiting enzyme in the PPP, a potentially relevant therapeutic target in this disease (Xu et al. 2016; Poulain et al. 2017). A key function of the PPP is the generation of redox potential in the cell via conversion of nicotinamide adenine dinucleotide phosphate (NADP⁺) to its reduced form (NADPH) for biosynthesis and protection from oxidative stress. The serine/threonine-protein phosphatase 2A (PP2A) functions as a tumor suppressor and it is down-regulated in multiple types of cancer. However, in B-ALL PP2A functions to redirect glucose from glycolysis to the PPP as a guard against oxidative stress (Xiao et al. 2018). This metabolic shunt compensates for the activity of the B-cell transcription factors PAX5 and IKZF1, which normally down-regulate the expression of G6PD and other key PPP enzymes, resulting in low PPP activity in B cells (Xiao et al. 2018). As a result, inhibition of PP2A with LB-100 abrogates the shunt of glucose carbon to the PPP and results in marked antitumor effects (Xiao et al. 2018). The relevance of the metabolic wiring in normal hematopoietic cells for leukemia tumor initiation and maintenance is further supported by studies on the role of glycolysis in hematopoietic stem cell (HSC) self-renewal and transformation. HSCs normally rely heavily on glycolysis and loss of the glycolytic enzymes pyruvate kinase M2 (Pkm2) or lactate dehydrogenase A (Ldha), which forces a shift from glycolysis to mitochondrial respiration, results in impaired long-term repopulating capacity upon transplantation (Wang et al. 2014). Notably, genetic inactivation of Pkm2 and Ldha in HSCs also delays the development of myeloid leukemia following oncogene expression in support of active glycolysis as an important requirement for leukemia initiation (Wang et al. 2014). Beyond its role in tumor initiation and maintenance, increased glycolytic activity has also been linked with leukemia resistance to therapy. In ALL, tumors with primary resistance to prednisolone, a glucocorticoid central in the treatment of this disease, show up-regulation of genes involved in glycolysis and carbohydrate metabolism (Holleman et al. 2004). Moreover, 2-DG synergizes with prednisolone in these glucocorticoid-resistant cells and induces apoptosis, supporting a role for the inhibition of glycolysis in rendering ALL cells more sensitive to glucocorticoid treatment (Hulleman et al. 2009). Finally, systemic regulation of glucose levels in the context of AML has been proposed as a mechanism favoring glucose uptake by myeloblasts (Ye et al. 2018). Mechanistically, AML can increase serum levels of Insulin-like growth factor binding protein 1 (IGFBP1), which results in desensitization of normal tissues to insulin, decreasing their glucose uptake. In this way, leukemic cells, which do not require insulin for glucose uptake, would have a competitive advantage in the acquisition and utilization of systemic glucose.

Taking aim at the mitochondria

Despite the growth advantage conferred by the use of aerobic glycolysis as a source of anabolic precursors and redox potential, many hematopoietic malignancies utilize both glycolysis and oxidative phosphorylation for ATP production, and some tumors still favor mitochondrial oxidation as a source of energy (Fig. 2; Weinberg et al. 2010; Guo et al. 2011; Marin-Valencia et al. 2012; Birsoy et al. 2015; Boroughs and DeBerardinis 2015; Hensley et al. 2016). The control of nutrient utilization is regulated in part by prolyl hydroxylase domain proteins, which hydroxylate proline residues in substrate proteins involved in fuel switching. Among these, PHD3 can suppress fatty acid oxidation in response to nutrient abundance via acetyl-coA carboxylase 2 (ACC2) hydroxylation, and low levels of PHD3 expression in AML make these tumors rely on lipid catabolism regardless of external nutrient availability (German et al. 2016). Metformin, an inhibitor of mitochondrial complex I, in clinical use for the treatment of type 2 diabetes, has shown antitumor effects via disruption of oxidative phosphorylation in tumor cells (Bailey and Turner 1996) and is in clinical trials in combination with standard chemotherapy for the treatment of relapsed ALL and chronic lymphocytic leukemia (CLL) (NCT01750567, NCT01324180). In CLL lymphocytes, tyrosine kinase inhibition with dasatinib can increase glucose consumption while reducing lactate production, suggesting a shift in glucose use from aerobic glycolysis to the TCA cycle and oxidative phosphorylation (Martinez Marignac et al. 2013). In agreement with this, dasatinib sensitive CLL cells are also selectively sensitive to metformin (Martinez Marignac et al. 2013). Moreover, in T-ALL, mitochondrial complex I inhibition with metformin has been reported to synergize with daunorubicin, vincristine, L-asparaginase, and etoposide, enhancing the antileukemic effects of these drugs (Pan et al. 2012; Rosilio et al. 2013; Yi et al. 2017). In addition, in chronic myeloid leukemia (CML) and AML, metformin suppresses leukemia cell proliferation, clonogenic activity, and survival, consistent with higher mitochondrial biogenesis and higher dependency on mitochondrial oxidation in leukemia myeloblasts compared with normal hematopoietic precursor cells (Green et al. 2010; Vakana et al. 2011). Similarly, inhibition of mitochondrial function with tigecycline, a third generation tetracycline antibiotic that interferes with translation by blocking the interaction of aminoacyl-tRNA with the A site of the ribosome in bacteria and mitochondria, has been proposed as a potential therapy in AML (Škrtić et al. 2011). Furthermore, inhibition of ClpP, a mitochondrial protease frequently overexpressed in AML, can induce leukemia cell death while sparing normal hematopoietic cells (Cole et al. 2015). Importantly, AML cells resistant to cytarabine chemotherapy show higher levels of oxidative phosphorylation and are highly sensitive to mitochondrial targeting with tigecycline or inhibitors of the electron transport chain in vitro and in vivo (Farge et al. 2017).

Figure 2.

Mitochondrial metabolic therapeutic targets. The mitochondria also serves as a major energy factory in leukemia cells in support of targeting oxidative phosphorylation with biguanide drugs (metformin and phenformin) and mitochondrial protein biosynthesis with tigecycline. Leukemia cells, which are highly dependent on arginine–creatine metabolism, are sensitive to cyclocreatine-mediated inhibition of creatine kinase. Activation of the intrinsic apoptosis pathway with BH3 mimetic drugs such as ABT199 activate the BAK–BAX complex to introduce pores in the mitochondrial membrane, enhancing the activity of mitochondrial metabolism-targeting drugs.

An important consideration is that, even within the same tumor, leukemia populations may not be metabolically homogeneous and that chemoresistant leukemia-initiating cells responsible for tumor progression and therapeutic failure may show different metabolic characteristics and dependencies from bulk blast progenitors. In this setting, it has been proposed that leukemia stem cells are characterized by relatively low levels of reactive oxygen species and overexpression of the BCL2 antiapoptotic factor, and that these features can be therapeutically targeted by reducing oxidative phosphorylation with ABT-199, a small molecule BCL2 inhibitor (Lagadinou et al. 2013). In addition, and most notably, ABT-199 plus azacitidine, a DNA demethylating agent, can further reduce oxidative phosphorylation in AML cells and effectively induces durable clinical responses in older, treatment-naïve patients (Pollyea et al. 2018). In accord, CML leukemia-initiating cells show increased oxidative metabolism compared with normal hematopoietic stem cells, which can be targeted with tigecycline (Kuntz et al. 2017). Of note, the combination of tyrosine kinase inhibition with imatinib plus mitochondrial disruption with tigecycline can effectively eliminate most leukemia stem cells in xenograft models (Kuntz et al. 2017).

Decreased energy levels in cells activate AMP-activated protein kinase (AMPK), a crucial energy sensor, which promotes ATP production by increasing the activity and expression of proteins involved in catabolism including glycolysis and fatty acid oxidation, while conserving ATP by switching off biosynthetic pathways such as fatty acid, glycogen, and protein synthesis (Merrill et al. 1997; Marsin et al. 2000, 2002; Li et al. 2011). Oncogenic NOTCH1 promotes glycolysis in T-ALL, but also induces metabolic stress and AMPK activation, which in turn restrains aerobic glycolysis and favors oxidative phosphorylation rendering T-ALL lymphoblasts sensitive to phenformin, a metformin-related biguanide complex I inhibitor (Kishton et al. 2016). Consistently, treatment of T-ALL cells with metformin stimulates AMPK to trigger autophagy and apoptosis (Grimaldi et al. 2012). However, and importantly, AMPK also regulates metabolic energy balance at the whole-body level. Dietary restriction in mice harboring MLL-AF9-induced AML leads to activation of AMPK, which is essential to support leukemia development (Saito et al. 2015). Thus, AMPK deletion significantly delays leukemogenesis and depletes leukemia-initiating cells by reducing glucose uptake, and increasing oxidative stress and DNA damage (Saito et al. 2015). Notably, AML leukemia-initiating cells are particularly dependent on AMPK to suppress oxidative stress in the hypoglycemic bone marrow environment and AMPK inhibition synergizes with dietary restriction to suppress leukemogenesis (Saito et al. 2015). In addition, it should be considered that diet may affect the activity and antileukemic effects of metabolic drugs and targeted therapies as a result of the replenishment of metabolic pathways (Polet et al. 2016) and signaling feedback mechanisms (Hopkins et al. 2018), respectively. The effects of diet in therapy response is exemplified by the impact of ketogenic diet on the effect of PI3K inhibitor in AML (Hopkins et al. 2018). Ketogenic diet in animal leukemia models accelerates the onset of MLL-AF9-induced AML, however it also enhances the response to PI3K inhibitors, by precluding the development of tumor-enhancing hyperinsulinemia.

The ecotropic virus integration site 1 (EVI1) gene encodes a transcription factor with chromatin remodeling activity (Hinai and Valk 2016). Aberrant expression of EVI1 is an oncogenic driver in AML bearing chromosomal rearrangements inv(3)(q21q26·2) or t(3;3)(q21;q26·2) involving the EVI1 locus, and also an important independent adverse prognostic marker in 6%–11% cases with aberrant EVI1 expression (Hinai and Valk 2016). Among other oncogenic effects, EVI1 expression remodels the metabolic landscape of hematopoietic stem cells altering arginine metabolism and de novo nucleotide synthesis (Fenouille et al. 2017). In addition, EVI1 overexpressing AMLs show high expression of mitochondrial creatine kinase CKMT1, the enzyme responsible for the transfer of a high-energy phosphate from mitochondria to the cytosolic carrier, creatine (Fenouille et al. 2017). Notably, CKMT1 inhibition in these cells compromises mitochondrial respiration and ATP production by impairing the arginine–creatine pathway (Fenouille et al. 2017). As a result, EVI1-expressing leukemia cells are dependent on arginine–creatine metabolism and become sensitive to creatine kinase inhibition with cyclocreatine (Fenouille et al. 2017).

Targeting nucleotide biosynthesis and degradation pathways

Nucleotide biosynthesis is an essential component of cell metabolism and a major vulnerability in actively proliferating cells. The synthesis of purine and pyrimidine nucleotides is centrally connected to anabolic pathways as it utilizes energy and building blocks from multiple metabolic routes engaging amino acid metabolism, the pentose phosphate pathway, the one-carbon-unit cycle and the tricarboxylic acid cycle (Fig. 3). In leukemia cells, nucleotide synthesis critically supports DNA replication and ribosome biogenesis as essential processes for cell proliferation and growth. Proof of principle for the targeting of nucleotide metabolism in the clinic emerged early on with the seminal identification of the antileukemic effects of aminopterin, a folate antagonist inhibitor of nucleotide biosynthesis, in acute lymphoblastic leukemia (Farber and Diamond 1948). Today, antimetabolites targeting nucleotide biosynthesis are a stalwart component of the treatment of hematologic malignancies. Commonly used antimetabolites in the treatment of leukemia include folic acid antagonists, such as methotrexate, purine antimetabolites, such as 6-mercaptopurine, fludarabine phosphate, pentostatin, clofarabine, and cladribine, and pyrimidine antimetabolites such as cytarabine. New antimetabolite drugs are actively being incorporated in the antileukemic armamentarium targeting these pathways. Recently, dihydroorotate dehydrogenase (DHODH), an enzyme mediating the fourth step in de novo pyrimidine biosynthesis (Löffler et al. 1997), has been proposed as a target in AML, where depletion of the pyrimidine pool not only abrogates proliferation, but also induces a HOXA9-dependent differentiation block, triggering myeloid differentiation and suppressing leukemia-initiating cell activity (Sykes et al. 2016; Christian et al. 2019). In addition, nucleotide degradation pathways have started to gain attention with the realization of important dependencies mediated by the clearance of endogenous and drug-generated toxic nucleotide metabolic byproducts. The purine nucleotide phosphorylase (PNP) enzyme mediates nucleotide degradation by catalyzing the cleavage of inosine, deoxyinosine, guanosine, and deoxyguanosine (dGuo) to their corresponding base and sugar 1-phosphate. In the absence of PNP, nucleosides accumulate, active deoxycytidine kinase metabolizes the excess deoxyguanosine to produce dGTP, which in turn inhibits ribonucleotide diphosphate reductase, blocking the synthesis of dCDP and dUDP and DNA synthesis, particularly in dividing T-cells (Schramm 2002). Consistently, forodesine, a transition state analog inhibitor of PNP has shown antitumor effects in T-ALL (Homminga et al. 2011) and clinical activity in peripheral T-cell lymphomas (Makita et al. 2018).

Figure 3.

Nucleotide metabolism. Purine and pyrimidine biosynthesis are central to DNA replication and can be inhibited with antimetabolite drugs. In addition, the purine degradation activity of NT5C2, which contributes to resistance to 6-MP, sensitizes leukemia cells to inhibition of purine biosynthesis with mizoribine.

6-mercaptopurine (6-MP), a purine base analog commonly used in the treatment of ALL, is incorporated in salvage pathway of purine biosynthesis and induces antitumor effects via inhibition of de novo purine biosynthesis and by inducing apoptosis upon incorporation into DNA (De Abreu 1994). The cytosolic 5′-Nucleotidase II (NT5C2), an enzyme responsible for the intracellular 5′-dephosphorylation of the purine biosynthesis precursors inosine monophosphate (IMP), guanosine monophosphate (GMP), and xanthine monophosphate (XMP), can antagonize the activity of 6-MP by facilitating the dephosphorylation and cellular export of the thiopurine-derived metabolites thio-IMP, thio-XMP, and thio-GMP (Dieck and Ferrando 2019). Notably, somatic activating mutations in NT5C2 are present in 3%–10% of relapsed B-ALL and 20% of relapsed T-ALL cases (Meyer et al. 2013; Tzoneva et al. 2013; Oshima et al. 2016) and can also be found in acute promyelocytic leukemia (APL) relapse samples from patients who have been treated with 6-MP (Lehmann-Che et al. 2018). The direct mechanistic link between increased NT5C2 activity and resistance to 6-MP supports a role of NT5C2 inhibition in the abrogation of 6-MP resistant clones. Moreover, excess NT5C2 activity and consequent increased export of purine nucleosides renders NT5C2 mutant ALL cells more sensitive to mizoribine, a purine biosynthesis inhibitor blocking inosine monophosphate dehydrogenase (IMPDH) (Tzoneva et al. 2018).

Amino acids for protein biosynthesis and beyond

Amino acids are the building blocks of protein biosynthesis, but they also serve as a source of carbon and nitrogen in nucleotide synthesis and other biosynthetic pathways. In addition, amino acid degradation can also constitute an important source of precursors for energy production. Ketogenic amino acids leucine and lysine generate acetyl-CoA, while glycogenic amino acids generate pyruvate and TCA cycle intermediates. Among these, glutamine plays a prominent role as a carbon and nitrogen source both in normal cells and in tumor metabolism. Glutamine conversion to glutamate and then α-ketoglutarate feeds carbon into the TCA cycle and glutamine metabolism contributes to the synthesis of lipids, nucleotides, and nonessential amino acids (DeBerardinis et al. 2007). AML cells are particularly dependent on glutamine, as glutamine controls oxidative phosphorylation in these cells, and removal of glutamine leads to apoptosis (Willems et al. 2013; Jacque et al. 2015). Consistently, glutaminase (GLS), the enzyme that catalyzes the conversion of glutamine to glutamate, has been proposed as a therapeutic target in this disease (Matre et al. 2016; Gallipoli et al. 2018; Gregory et al. 2018). Moreover, glutamine deprivation in AML cells results in the up-regulation of 3-phosphoglycerate dehydrogenase (PHGDH) and phosphoglycerate aminotransferase (PSAT), two essential enzymes in the serine biosynthesis pathway, and serine removal enhances the effects of GLS inhibition therapy (Polet et al. 2016). In addition, glutamine use is also prominently active in T-ALL and glutaminolysis critically contributes to leukemia cell growth and survival in the context of suppression of oncogenic NOTCH1 signaling, making glutaminase inhibitors highly synergistic with anti-NOTCH1 therapies in this disease (Herranz et al. 2015).

Asparagine is a nonessential amino acid in most tissues as it is synthesized via a transamination reaction catalyzed by asparagine synthetase (ASNS), which converts aspartate and glutamine into asparagine and glutamate. However, acute lymphoblastic leukemia cells are auxotropic for asparagine as they express low levels of ASNS. As a result, these tumors are highly vulnerable to asparaginase treatment, which induces systemic degradation of asparagine and depletes extracellular sources of this amino acid required for leukemia cell growth (Kidd 1953a,b; Broome 1963a,b; Miller et al. 1969; Ohnuma et al. 1970; Capizzi et al. 1971). Mechanistically, asparaginase can deplete not only the asparagine but also the glutamine intracellular pool. Moreover, metabolomic profiling following asparaginase treatment reveals global metabolic shifts with decreased translation and inhibited glycolysis, activation of autophagy and increased fatty-acid oxidation and cellular respiration (Hermanova et al. 2016). Altogether, these perturbations induce profound antileukemic effects and, as a result, asparaginase treatment contributes significantly to the success of multiagent chemotherapy regimens for ALL (Sallan et al. 1983; Clavell et al. 1986). Moreover, activation of the Wnt pathway via GSK3-dependent inhibition, could sensitize leukemia cells to asparaginase (Hinze et al. 2019).

Arginine, a semi-essential amino acid, can be synthesized from citrulline, but it must also be taken up from the diet in order to meet the cellular demands (Wheatley 2005). AML blast cells frequently show defects in the arginine-recycling pathway enzymes argininosuccinate synthase and ornithine transcarbamylase, which makes them arginine auxotrophic and dependent on arginine uptake by the CAT-1 and CAT-2B arginine transporters. Consequently, depletion of extracellular arginine with BCT-100, a pegylated human recombinant arginase, leads to a rapid decrease of the intracellular arginine pool and induces proliferation arrest, apoptosis, and decreased AML engraftment in vivo (Mussai et al. 2015), a therapeutic strategy that may also apply for the treatment of T-ALL (Hernandez et al. 2010; Morrow et al. 2013). However, altered arginine availability can also be induced by AML cells, which express and release arginase II into the plasma, as a mechanism to suppress immunosurveillance by interfering with T-cell proliferation and inducing monocyte polarization towards a suppressive M2-like phenotype (Mussai et al. 2013).

In CML blast crisis cells, the synthesis of essential branched-chain amino acids leucine, valine, and isoleucine is enhanced by up-regulation of branched chain amino acid transaminase 1 (BCAT1), an enzyme catalyzing the amination of branched-chain keto acids. In this setting, BCAT1 inhibition induces cellular differentiation and impairs CML blast crisis propagation in vitro and in vivo in support of an essential role for branched amino acid production in this disease (Hattori et al. 2017).

The multiple roles of amino acid metabolism in leukemia growth and survival beyond protein biosynthesis is further substantiated by the use of cysteine as a precursor for the biosynthesis of glutathione (GSH) required for the maintaining of intracellular redox potential (Orlowski and Meister 1971; Wu et al. 2004a). Tumor B cells in CLL have high levels of intracellular reactive oxygen species and are highly dependent on SLC7A11-mediated cysteine import from the microenvironment to support GSH production and to maintain their intracellular redox balance (Zhang et al. 2012). Consequently, treatment of CLL cells with a cysteinase enzyme alone or in combination with fludarabine led to significant increases in apoptosis both in the presence and in the absence of stromal cells (Cramer et al. 2017).

Lipids also fuel leukemia growth

Cholesterol, phospholipids, and triglycerides serve as structural components of membranes, and even though most tissues can satisfy their lipid requirements through the uptake of free fatty acids and lipoproteins from the blood, cancer cell growth requires active biosynthesis to meet the high demand for the biogenesis of membrane structures. Fatty acid biosynthesis is initiated by the carboxylation of acetyl-CoA to produce malonyl-CoA, which is subsequently condensed by fatty acid synthase (FASN) to generate palmitate (Maier et al. 2008). Resulting fatty acids, along with those taken up from the extracellular environment, serve as building blocks for the synthesis of triacylglycerides, glycerophospholipids, cardiolipids, sphingolipids, and eicosanoids.

In addition, degradation of fatty acids by fatty acid oxidation in the mitochondria is a prominent source of acetyl-CoA for oxidative phosphorylation and energy production in cancer cells. Transfer of fatty acids to the mitochondria requires first their coupling with to coenzyme A, and then the transfer of the acyl group to carnitine, a reaction catalyzed by the carnitine palmitoyltransferase 1a (CPT1A) enzyme. Targeting fatty acid transport and β-oxidation with the CPT1a inhibitor ST1326 induces cell growth arrest, mitochondrial damage, and apoptosis in AML cells (Ricciardi et al. 2015). Of note, cell growth and survival in AML monocytic cells seems to be supported by bone marrow adipocytes, which promote fatty acid β-oxidation (Tabe et al. 2017). Consistently, the lipolysis inhibitor orlistat, which blocks the generation of free fatty acids from triglycerides and phospholipids, and pharmacologic inhibition of fatty acid oxidation with etomoxir or ranolazine, inhibit AML cell proliferation, and sensitize human leukemia blasts to apoptosis induced by ABT-737, a small molecule inhibitor of the BCL2 and BCLXL antiapoptotic factors (Samudio et al. 2010). In an analogous way, CLL cells, which express high levels of CPT1 and CPT2, are sensitive to suppression of fatty acid transport into the mitochondria with perhexiline, a CPT inhibitor, leading to depletion of cardiolipin, a key component of mitochondrial membranes, and consequent loss of mitochondrial integrity and induction of programmed cell death (Liu et al. 2016).

Lipid steroids play important roles in membrane structure and fluidity (cholesterol), as components of the electron transport chain (ubiquinone), in protein glycosylation (dolichol), and in protein isoprenylation (farnesyl pyrophosphate and geranylgeranyl pyrophosphate). Synthesis of steroids from acetyl-CoA in the mevalonate pathway can be blocked with statins, which prevent the conversion of HMG-CoA to mevalonate by inhibiting HMG-CoA reductase (HMGCR) (Goldstein and Brown 1990). An antitumor effect of statin drugs was recognized early on (Newman et al. 1994) and in vitro experiments have shown that statins can induce apoptosis in hematologic malignancies (Dimitroulakos et al. 2000; Xia et al. 2001; Wong et al. 2002; Wu et al. 2004b). Mechanistically, statins can induce apoptosis in leukemia cells at least in part by interfering with the prenylation of the Rho and Ras GTPases (Mangues et al. 1998; Cafforio et al. 2005). Notably, statins are broadly used as hypolipidemic agents for reduction of cardiovascular risk, and a recent retrospective population-based study has shown both an association between CLL and dislipidemia and improved CLL survival in patients receiving hypolipidemic therapy (Mozessohn et al. 2017). These results are in agreement with a role for lipid metabolism in CLL and the observation of increased cell proliferation in early-stage indolent CLL blasts in response to increased levels of blood low-density lipoproteins (Chow et al. 2016). In addition, statins have been evaluated clinically for the treatment of AML in combination with chemotherapy. These studies support the findings that statin treatment may enhance complete remission rates in favorable-risk AML groups, but have a less clear role in high-risk AML (Kornblau et al. 2007; Advani et al. 2018). In addition, treatment of AML and CLL cells with statins increases their sensitivity to BCL2 inhibition with ABT-199 as a result of inhibition of protein geranylgeranylation with consequent up-regulation of the protein p53 up-regulated modulator of apoptosis (PUMA). Moreover, and in support of clinical relevance, retrospective analyses of three CLL clinical studies showed that statin use was associated with enhanced response to ABT-199 therapy (Lee et al. 2018).

Sphingolipids are lipid components of cell membranes with important roles in control of cell proliferation, cell–cell interactions, signaling, and cell survival. De novo sphingolipid biosynthesis is initiated through the action of serine palmitoyltransferase (SPT), which joins palmitoyl-CoA to serine to produce sphingosine, the backbone of all sphingolipids. Conjugation of sphingosine to a fatty acid generates ceramide, and addition of a polar head group to ceramide leads to the production of more complex sphingolipids, including sphingomyelin (after the addition of phosphocholine) and glycosphingolipids (after the addition of a sugar). In this group, ceramides are proapoptotic and promote cell cycle arrest and senescence (Obeid et al. 1993). Ceramide synthase (CerS), the enzyme that catalyzes the formation of ceramide from sphingosine, is increased in CLL upon treatment with the BCL2-family inhibitor ABT-263, resulting in enhanced apoptosis (Beverly et al. 2013). In addition, in AML leukemia cells, FLT3 signaling is associated with lower CerS1 expression and CerS1 up-regulation as result of FLT3 inhibition leads to mitophagy-dependent cell death (Dany et al. 2016). On the other hand, sphingosine-1-phosphate (S1P), a secreted sphingolipid, promotes cell migration and plays important roles in tissue homing of lymphoid and myeloid cells. Sphingosine kinase (SPHK) generates S1P via phosphorylation of sphingosine and inhibition of this enzyme is synergistic with vincristine chemotherapy in T-ALL (Evangelisti et al. 2014). Similarly, inhibition of SPHK1 in combination with cytarabine enhanced leukemia cell death in AML (Powell et al. 2017). Moreover, genetic deletion of Sphk1 in BCR-ABL1-induced mouse models of ALL delayed leukemia development and was synergistic with tyrosine kinase inhibitor treatment against BCR-ABL1-positive cell lines, further supporting a relevant role for S1P signaling in promoting leukemia development (Wallington-Beddoe et al. 2019).

Beyond metabolism

Cancer metabolic networks control not only energy balance and growth, but are also increasingly recognized as important modulators of epigenetic mechanisms of gene expression via modulation of epigenetic enzymes implicated in DNA methylation and as writers and erasers of nucleosome epigenetic marks in histone tails. In fact, acetyl-coA is required for histone acetylation, and α-ketoglutarate, a metabolic intermediate in the TCA cycle, serves as a substrate for the TET family of DNA demethylases and the Jumonji family of histone demethylases (Fig. 4; Tsukada et al. 2006; Tahiliani et al. 2009).

Figure 4.

Metabolic targeting of epigenetic mechanisms in leukemia. TET enzymes, which mediate DNA demethylation, use α-ketoglutarate as a substrate and ascorbate as a cofactor and are inhibited in AML and myeloproliferative disorders as a result of loss-of-function mutations in TET2 or because of 2HG produced by neomorphic mutations in the IDH1 and IDH2 genes. Small molecule inhibitors of mutant IDH1 and IDH2, and vitamin C supplementation can abrogate the production of 2HG or enhance TET2 activity, respectively, restoring DNA methylation patterns and myeloid cell differentiation.

The isocitrate dehydrogenase enzymes IDH1 and IDH2, which catalyze the conversion of isocitrate to α-ketoglutarate, are mutated in 20% of AML cases (Schnittger et al. 2010; Green et al. 2011). Recurrent alterations in the IDH1 and IDH2 genes in AML are characteristically heterozygous missense mutations involving arginine residues implicated in isocitrate binding (Dang et al. 2009; Mardis et al. 2009; Yan et al. 2009). These gain-of-function mutations change substrate specificity and result in the conversion of α-ketoglutarate into 2-hydroxyglutarate (2-HG) (Dang et al. 2009; Kranendijk et al. 2010; Ward et al. 2010), an oncometabolite that functions as an inhibitor of DNA and histone demethylases, leading to consequent DNA hypermethylation and deregulated gene expression (Figueroa et al. 2010; Xu et al. 2011). Notably, mutant IDH enzymes can be targeted with small molecule inhibitors AG-120 (Ivosidenib) for IDH1 and AG-221 (Enasidenib) for mutant IDH2 (Stein et al. 2017; DiNardo et al. 2018). In a phase I clinical trial, Ivosidenib induced differentiation and maturation of mutant IDH1 AML cells, decreased 2-HG levels in serum and resulted in durable remissions in patients (DiNardo et al. 2018). Similarly, Enasidenib induced differentiation and maturation of malignant myeloblasts with IDH2 mutations in phase I and induced clinically relevant responses in patients who had previously failed conventional AML therapy (Stein et al. 2017). Conversely, heterozygous loss-of-function mutations in TET2, which impair the ability of this enzyme to mediate DNA demethylation via oxidation of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC), are present in about 30% of AML tumors (Abdel-Wahab et al. 2009; Delhommeau et al. 2009). Notably, TET proteins use vitamin C as a cofactor (Fritz et al. 2014) and vitamin C supplementation can overcome the effects of partial Tet2 deficiency in AML, leading to myeloid differentiation (Cimmino et al. 2017). Finally, overexpression of BCAT1 in AML leukemic stem cells decreases α-ketoglutarate levels by coupling this metabolite to α-amino groups from branched chain amino acids. In turn, depletion of α-ketoglutarate results in altered TET activity and DNA hypermethylation, reminiscent of that induced by IDH mutations, in support of the branched chain amino acid-BCAT1-α-ketoglutarate axis as an oncogenic mechanism and a potential therapeutic target in this disease (Raffel et al. 2017).

Future perspectives

While the studies highlighted here have significantly enhanced our understanding of the metabolic wiring of leukemia cells, the metabolic programs regulating leukemia initiation and progression remain to be fully understood. Deep exploration of leukemia metabolomics using improved analytical techniques suitable for the analysis of small cell numbers and for in vivo analyses is sure to bring new and improved perspectives on the metabolic circuitries operating in leukemia populations and the interaction between leukemia cells and their microenvironment. Moreover, while targeting metabolic pathways deregulated in leukemia, and most relevantly in leukemia-initiating cell populations offers much prospect to improve the treatment of these hematologic malignancies, realizing this opportunity will require deep exploration of metabolic vulnerabilities across different genetic and biological leukemia groups as well as dedicated efforts to investigate these in primary leukemia samples, relevant mouse leukemia models, and patient-derived xenografts in vivo. However, it should be noted that while many of the targets and drugs covered in this review display great promise in the laboratory setting, many are not yet ready for deployment in the clinic.