Abstract
Purpose:
Patient body motion during a cardiac Positron Emission Tomography (PET) scan can severely degrade image quality. We propose and evaluate a novel method to detect, estimate, and correct body motion in cardiac PET.
Methods:
Our method consists of three key components: motion detection, motion estimation, and motion-compensated image reconstruction. For motion detection, we first divide PET list-mode data into 1-second bins and compute the center of mass (COM) of the coincidences’ distribution in each bin. We then compute the covariance matrix within a 25-second sliding window over the COM signals inside the window. The sum of the eigenvalues of the covariance matrix is used to separate the list-mode data into “static” (i.e. body motion free) and “moving” (i.e. contaminated by body motion) frames. Each moving frame is further divided into a number of evenly-spaced sub-frames (referred to as “sub-moving” frames), in which motion is assumed to be negligible. For motion estimation, we first reconstruct the data in each static and sub-moving frame using a rapid back-projection technique. We then select the longest static frame as the reference frame and estimate elastic motion transformations to the reference frame from all other static and sub-moving frames using non-rigid registration. For motion-compensated image reconstruction, we reconstruct all the list-mode data into a single image volume in the reference frame by incorporating the estimated motion transformations in the PET system matrix. We evaluated the performance of our approach in both phantom and human studies.
Results:
Visually, the motion-corrected (MC) PET images obtained by the proposed method have better quality and fewer motion artifacts than the images reconstructed without motion correction (NMC). Quantitative analysis indicates that MC yields higher myocardium to blood pool concentration ratios. MC also yields sharper myocardium than NMC.
Conclusion:
The proposed body motion correction method improves image quality of cardiac PET.
Keywords: body motion, bulk motion, motion detection, motion estimation, motion correction, image reconstruction, cardiac PET
1. INTRODUCTION
Positron Emission Tomography (PET) is a powerful imaging technique commonly used in the fields of oncology, neurology, and cardiology. The spatial resolution of PET scanners has greatly improved in recent years owing to advances in hardware (e.g., PET detector) and software (e.g., reconstruction algorithm) technologies. However, the intrinsic resolution of PET is seldom realized in practice because of patient motion. Motion causes image artifacts that can degrade the diagnostic value of PET images1–4. When severe motion occurs, an ongoing scan may have to be aborted or sometimes rescheduled.
Two different types of motion can affect cardiac PET imaging: physiologic motion (i.e. pseudo-periodic motion due to cardiac and respiratory functions) and body motion (i.e. unpredictable changes in the patient’s body position). Cardiac and respiratory motion correction has recently attracted great attention in PET imaging5–10. Methods designed to correct physiologic motion may become inaccurate if data are corrupted by body motion. Therefore, a step toward correction for both types of patient motion is to tackle body motion. Although body motion can be minimized by patient cooperation, it remains a challenging problem in PET11, 12.
Most of body-motion correction methods reported in the past focused on the head region. One group of methods is to employ external markers, such as optical tracking13–15 or wireless or wired magnetic resonance (MR) micro-coils16,17, to track the head motion. Another group of methods is based on image-driven motion correction techniques18–21. The first step of these method is to reconstruct multiple short-frame data for a given scan –typically 10–60 seconds per frame (depending on the tracer used). Subsequently, rigid registrations are performed by aligning all frames to a selected reference frame. The corrected image is formed as the summation of all aligned images. It has been shown that such image-driven methods can effectively improve the cardiac PET image quality22,23.
On the other hand, list-mode event-driven methods were shown to have the capability to detect respiratory and/or cardiac motion signals24–30. A similar technique was applied to detect rigid head movement with time-of-flight (TOF) information31. Inspired by these works, we propose an approach that can detect, estimate, and compensate for body motion using list-mode data in cardiac PET. Visual assessment and quantitative analysis were performed to evaluate the performance of the proposed approach in cardiac PET.
2. MATERIALS AND METHODS
Because body motion in a PET scan is unpredictable, it must always be tracked during the scan. We propose to use list-mode data to detect body motion, which is then estimated and corrected accordingly. Our method consists of three key steps: motion detection, motion estimation, and motion-compensated image reconstruction. Motion detection employs a list-mode event-driven metric to detect body motion, allowing us to split the scan into a set of “static” (i.e. body motion free) and “moving” (i.e. body motion contaminated) frames. The underlying assumption is that body motion will cause shifts in the spatial distribution of measured events that can be captured by event coordinates. Motion estimation obtains elastic transformations that register every static and moving frame to a selected static reference frame. Finally, motion-compensated image reconstruction incorporates the estimated transformations into the PET system matrix. The list-mode data are jointly reconstructed with the updated system matrix to obtain a motion-free image volume in the reference frame. We assessed the performance of our method using both phantom and human studies.
2.A. Motion detection
Given a PET scan, we first divided the list-mode data into 1-second bins and computed a center-of-mass (COM) vector, mb, for each bin using:
Eq. (1) |
where b is the bin index, Nb is the total number of line of responses (LOR) detected in the bin, (ax,l, ay,l, az,l) is the (x,y,z) coordinate of the center of the lth LOR in the bin.
Outlier events, which were identified using a Hampel filter32, were removed for further analysis. The filtering procedure worked as follows: for each 1-second bin, a median COM was computed over seven bins centered at the bin; then, the standard deviation of COM around the median value was calculated; if the COM of the bin differed from the median value by more than three standard deviations, that bin was discarded.
To define a single metric that can be used to detect body motion, we first computed a covariance matrix C using a sliding window (length=25 seconds, step size=1 second) using:
Eq.(2) |
where , i, j = x, y, z, and L = 25. The diagonal elements of C provide the variance of position along x, y, and z axis. The off-diagonal elements of C provide covariance information between axes. We then computed the eigenvalues of C using principal component analysis (PCA). The resulting eigenvalues, (δ1, δ2, δ3), were then used to compute the following metric, denoted motion index:
Eq. (3) |
which represents the degree of movement in the sliding window. The central 1-second list-mode data of each 25-second sliding window were labelled as “static” if β ≤ ρ or “moving” if β > ρ, where ρ is a global adaptive threshold. We set ρ to the motion index value, where the number of 1-second bins equals to 5% of the (static) peak value in the histogram of signal β. After labelling all 1-second bins, they were combined into continuous static (SF) and moving frames (MF). Frames shorter than 25-second were not used for subsequent processing. Each MF was further evenly divided into multiple 25-second sub-moving-frames (sub-MF) (the last sub-MF can be longer than 25 seconds because of the residual data), during which body motion was assumed to be negligible.
2.B. Motion estimation
The list-mode data in each SF and sub-MF were binned into sinograms. For efficient computation, each sinogram was directly back-projected to the image space. The back-projected image was divided by the sensitivity image, followed by applying a Butterworth bandpass filter to enhance the contrast. The resulting images were used to estimate non-rigid motion transformations between a selected reference SF (the longest SF), denoted SFref, and all other SFs and sub-MFs using parametric B-spline registration method. In this study, we used elastic rather than rigid registration to estimate motion. The elastic registration was, however, initialized using a rigid registration to obtain a more accurate motion estimation. The registration method, implemented in the elastix toolbox33, minimizes mutual information between a fixed image and a target image. The convergence of the registration is accelerated using a multi-resolution technique34.
2.C. Motion-compensated Image Reconstruction
We jointly reconstructed all the list-mode data of the motion-contaminated scan into a single image volume, λref, depicting the radioactivity distribution in SFref. This was performed by incorporating the estimated motion transformations into the PET system matrix during an iterative reconstruction process. The forward model for a given SF or sub-MF, k, is
Eq. (4) |
where ΔDk is a scalar equal to the relative duration of frame k to the whole scan, , , and are the sinograms containing the expected number of prompt, scattered, and random coincidence events, respectively, S is a diagonal matrix containing the LOR sensitivity coefficients, Mref→k is the motion transformation from SFref, to frame k, G is the geometric forward-projection operator, and Ak is a diagonal matrix containing the motion-dependent attenuation coefficients in each sinogram bin derived by deforming the attenuation map in SFref, followed by projection into the sinogram space. Random contribution for each frame was estimated by Gaussian smoothing of a delayed coincidence window. Scatter contribution for each frame was estimated with the single scatter simulation (SSS) method35. Both random and scatter contributions were computed using Siemens e7 tools. Based on this forward model, we used the ordered subset expectation maximization (OSEM)36 to estimate λref. The update equation is:
Eq. (5) |
where yk is the measured sinogram in frame k, 1I is the sinogram filled with the value of ones, K is the number of frames. Two iterations and 21 angular subsets were used in all reconstructions.
2.D. Phantom and human studies
Both phantom and human studies were performed on a Siemens PET/MR (Biograph mMR, Siemens Healthcare, Knoxville, TN). We performed phantom studies using an anthropomorphic torso phantom (Data Spectrum Corporation, Hillsborough, NC), which consists of multiple compartments. The myocardial defect, myocardium, ventricle cavity, left/right lungs, liver, and soft-tissue background compartments were filled with 0.85, 0.04, 0.67/0.76, 4.39, and 6.6 mCi 18F, respectively. The resulting concentration ratios between all compartments and background were close to previously reported values in cardiac [18F]-Fludeoxyglucose (FDG) PET37. The torso phantom has no “inherent” motion, e.g., deformation of the lung or cardiac compartments. PET list-mode data were acquired during two separate scans. In the first scan, data were acquired for ~4 minutes, during which a sudden movement (~12 mm translation) along the z-axis was induced manually to the phantom ~2 minutes after the start of the acquisition. In the second scan, data were acquired for ~3 minutes, during which a slow movement (up-to 20° rotation lasting for ~50 seconds along an arbitrary axis) was induced right after the start of the acquisition. For each scan, two separate MR scans (2-point gradient echo Dixon) were acquired before and after the movement. Afterwards, motion-free PET data were acquired for ~3 minutes (also another MR scan), which were used as the reference.
Three human cardiac PET-MR scans performed in our institution were retrospectively identified with noticeable motion artifacts. All human studies using 18F-FDG and 18F-TPP were approved by the Massachusetts General Hospital Institutional Review Board (IRB). The first subject was administrated with a bolus injection of ~11 mCi 18F-FDG and scanned for 65 minutes afterwards. The other two subjects were administrated with 4-[18F]-tetraphenylphosphonium (TPP) with a bolus injection of ~8 mCi plus continuous infusion of ~2 mCi and scanned for 90 minutes. For each of the three studies, the attenuation map was measured at the beginning of each PET scan using the vendor’s supplied Magnetic Resonance based Attenuation Correction (MRAC) protocol. The last 20-minute list-mode data of the FDG scan and 10-minute list-mode data of the TPP scans were used for analysis.
For each study, the selected list-mode data were used to perform motion detection and estimation as described in Secs. 2.A–B. The list-mode data were then reconstructed with and without motion correction. The static frame with the longest duration was selected as the reference frame. The list-mode data in the selected reference frame were reconstructed to serve as a motion-free reference image. A dimension of 344×344×127 and voxel size of 2.0×2.0×2.0 mm3 were used for image reconstruction. No post-reconstruction smoothing was applied.
For both phantom and human studies, the quality of motion-corrected (MC), non motion-corrected (NMC), and reference (REF) images was evaluated by comparing myocardium target-to-background-ratio (TBR) and myocardial wall thickness values. First, all the images were re-oriented into short-axis view and five evenly spaced planes from apex to the base were chosen. For each plane, four circular target regions of interest (ROI) (four mm in radius) were drawn in septal, lateral, anterior and inferior walls, separately (See Fig. 1). A background ROI (four mm in radius) was drawn in the middle of the left ventricle (LV) blood pool. For each target ROI, TBR was computed as the ratio between activity concentration in the target and background ROIs. The myocardial wall thickness was quantified by plotting line profiles across different regions in the five short-axis planes, as illustrated in Fig. 1. In the five short-axis planes, a total number of 20 profiles were plotted. For each profile, the wall thickness was quantified as the full-width half maximum (FWHM) of 1-D Gaussian distribution fitted to the profile. Paired t-tests were performed to evaluate differences between NMC and MC for both TBR and measured wall thickness values. A value of p<0.05 was considered statistically significant.
3. RESULTS
Figs. 2a–c show COM derived from the list-mode data as a function of time along x, y, and z directions for the phantom study with slow motion. Fig. 2d shows the motion index, β, which was derived using Eq. (3), versus time. The motion-contaminated frame can be clearly separated from the SF by thresholding the motion index at ρ = 0.05, which was derived as described in Sec. 2A. Fig. 3 shows images obtained with and without motion correction for both fast- and slow-motion phantom studies. The REF image from the motion-free scan was also shown.
Figs. 4a–c show COM as a function of time along x, y, and z directions for three human studies (a: FDG, b–c: TPP). Subjects 1 and 2 had both non-negligible fast and slow body motion. Subject 3 had only non-negligible slow body motion. Fig. 5a shows the motion index, β, derived using Eq. (3) as a function of time for subject 1. Fig. 5b shows the corresponding histogram of motion index. Again, this histogram allows us to define a threshold to separate MFs from SFs. With a derived threshold, ρ = 0.015, the motion index clearly identifies three SFs and two MFs.
Fig. 6 shows short- and horizontal long-axis views of MC, NMC, and REF myocardium images for subject 1. Fig. 7 shows short-axis views of MC, NMC, and REF myocardium images for subjects 2 and 3. MC images exhibited sharper myocardium, reduced spillover of activity from the myocardium to the blood pool, and more visible structures than NMC, as evidenced by the improved delineation of papillary muscles (see arrows in Figs. 6 and 7). Visually, myocardial walls of MC were also thinner than the ones of NMC. For each subject, both MC and REF images had similar spatial resolutions, although the REF image appeared noisier because it was obtained by reconstructing only the events in the reference frame.
Fig. 8 shows TBR and apparent wall thickness in MC, NMC, and REF images for all three subjects. For all subjects, MC yielded higher TBR (p<0.05) and lower wall thickness (p<0.05) than NMC. The quantitative results were consistent with the visual inspection (See Figs. 6 and 7). Table I summarizes the mean of TBR and measured wall thickness values for both phantom and human studies. In the selected ROIs, the increase in mean TBR after body motion correction was 114.0%, 44.2 % and 6.7 % for each human subject, respectively. For all sampled profiles, the mean decrease in myocardial wall thickness was 16.8 %, 11.2 % and 16.9 % for each subject, respectively.
Table I:
Study | TBR | Thickness (mm) | ||||
---|---|---|---|---|---|---|
MC | REF | NMC | MC | REF | NMC | |
Phantom fast | 4.8 | 4.71 | 2.12 | 9.52 | 9.54 | N/A* |
Phantom slow | 2.53 | 4.57 | 1.76 | 10.86 | 9.42 | 14.32 |
Subject 1 | 3.66 | 3.78 | 1.71 | 15.1 | 15.28 | 18.14 |
Subject 2 | 3.1 | 3.19 | 2.15 | 13.98 | 13.46 | 15.74 |
Subject 3 | 5.28 | 5.47 | 4.95 | 19.7 | 18.82 | 23.72 |
Unable to be quantified due to the ghost artifacts caused by motion in the image (left-bottom in Fig.3).
4. DISCUSSION
In this paper, we proposed a method that can correct body motion in PET imaging. We evaluated the performance of the method using both phantom and human studies. The results suggest that the proposed body motion correction method mitigates body motion artifacts in cardiac PET images. Improved spatial resolution, recovery of the myocardium activity, and reduced spill-over to the blood pool in the left ventricle were observed. Significantly higher TBR (p<0.05 for all the subjects) and lower wall thickness (p<0.05 for all the subjects) were obtained in MC, as compared to NMC images. All regions in myocardium exhibited improvement of image quality after motion correction. MC and REF images have similar image quality except that REF images were noisier. It is worth noting that the proposed approach is not limited to the specific scanner used in this study. Because the motion correction was performed purely based on PET raw data, the approach can be applied to stand-alone PET, PET/CT, and PET/MR as long as the scanner supports data acquisition in list-mode. Furthermore, the proposed approach can be extended to TOF-PET. With TOF information available, COM can be computed using TOF information rather than simply the center of each LOR. As a result, the correlation between COM and movement of activity distribution will be enhanced, therefore, leading to improved motion detection sensitivity and hence overall quality of correction.
Unlike some of the previously developed methods, our approach uses the information only from PET list-mode data, therefore, does not require information from external sensors. This makes it easier to implement the method in clinical settings. Also, the proposed method has two advantages over the conventional image-driven motion correction method (See Sec. 1). First, the conventional image-driven method bins list-mode data into even frames followed by reconstructing the data in each frame. The time duration of each frame is somewhat arbitrary. It ignores intra-frame motion and cannot determine exactly when body motion happens during a scan. Our approach computes a single metric, i.e., motion index, using a sliding window to detect motion. This allows us to bin the data according to the detected body motion during the scan, therefore, making motion compensation more accurate. Second, in our method, motion compensation is performed using a joint image reconstruction framework, which preserves Poisson noise properties in each SF and sub-MF. As a result, the noise level in motion-corrected image volume is not compromised38.
The proposed method is fully automatic that requires no intervention, e.g., manual selection for the adaptive threshold or separation of static and moving frames. To process a 20-minute list-mode data, it took ~7.5 hours in total using a single core on a 2.40-GHz 8-core Intel(R) Xeon(R) CPU. Reading list-mode events into the memory, motion detection, motion estimation, and image reconstruction took ~ 1 hour, 30 seconds, 1 hour, and 5.5 hours, respectively. Parallel computing could be used in the future to speed up the time-consuming steps.
To detect motion, we first divided list-mode data into 1-second bins and computed COM signals using Eq. (1). Because a typical respiratory cycle lasts ~5 seconds, we can see the influence of respiratory motion in the COM signals as shown in Fig. 4. Such respiratory signals, however, will have negligible effect on the motion index, which is used to detect body motion, because we used a 25-second sliding window, which is much longer than a respiratory cycle.
In this study, a given 1-second bin was assigned to either SF or MF by thresholding the motion index signal derived from Eq. (3). In this study, the threshold was set to the motion index value, at which the number of 1-second bins equals to 5% of the (static) peak value in the histogram of motion index. The periods when motion index is less than the threshold were assigned as SFs, otherwise, as MFs. The sensitivity of motion is affected by the value of the threshold as well as by the length of each sub-MF. The lower the threshold or shorter the length of each sub-MF, the higher the sensitivity. The length of each sub-MF, during which no motion is assumed, should be, however, long enough so that enough counts are contained and the effect from the respiratory signals becomes negligible.
We want to point out some limitations associated with our approach. First, we target at static PET scans, in which the tracer distribution remains relatively stable during the scan. Before reaching equilibrium, tracer distribution in the subject changes as a function of time. Such change, especially during the first few minutes after the injection, can contaminate the covariance matrix obtained in Eq. (2), making it difficult to detect motion. However, if motion is much faster than the change of tracer distribution, our approach can still be applied even if the tracer distribution is not at equilibrium. For instance, the 20-minute list-mode data used in this study for subject 1 were acquired ~45 minutes after the injection. During that 20 minutes, the FDG distribution was not at equilibrium yet, but its change was much slower than the speed of body motion. As a result, our approach was able to detect the motion successfully. While we have proved the feasibility of the proposed approach on myocardial viability studies, our approach still needs to be validated for myocardial perfusion imaging (MPI) studies. 82Rb and 13NH3 are the most commonly used PET tracers for MPI. For these two, our motion detection method may not work well because the change of tracer distribution can be fast when data are acquired. However, we expect the proposed approach will work for 18F-flurpiridaz PET imaging39. This new 18F labelled tracer is currently being evaluated in a clinical trial40 and has significant clinical potential because of its long half-life, high extraction factor and slow wash-out rate. Our approach is more important for 18F based tracers because 18F has smaller positron range than other PET radionuclides, hence better spatial resolution. We believe this feasibility study using 18F-FDG and 18F-TPP serves as an important step toward body motion correction for 18F-flurpiridaz PET, which is currently unavailable for human studies. Second, we only detected and corrected body motion in this study. There are three types of motion, which include cardiac, respiratory, and body motion, associated with a cardiac PET scan. We and others have previously studied extensively how to correct for cardiac and respiratory motion alone or together assuming no body motion5–10, 41, 42. One future work is to correct for all types of motion together for cardiac PET. We can assume that cardiac motion is superimposed on top of respiratory motion while respiratory motion is superimposed on top of the body motion. Further studies are needed to investigate how body motion affects motion phase tracking and motion field measurement for both cardiac and respiratory motion.
The proposed approach can be applied to other applications such as the brain and thoracic/abdominal oncologic imaging. Depending on the application, some modifications might be needed in the implementation of our approach. For example, only rigid registration is needed for motion estimation and motion-compensated image reconstruction for brain imaging. Also, the interval of sub-MFs can be less than 25 seconds to achieve more sensitive motion detection if we do not need to average out both cardiac and respiratory effects.
5. CONCLUSION
Body motion, which is unpredictable and should to be tracked all the time during a PET scan, can introduce unacceptable artifacts in PET images. In this study, we have proposed a data-driven approach that can detect and compensate such motion in PET. We detect motion using a sliding time window and estimate motion transformations using back-projected images. We incorporate the estimated motion transformations into PET system matrix and jointly reconstructed data in all frames to obtain a motion-corrected image volume in a static reference time frame without compromising PET statistics. We have applied our technique to cardiac phantom and human studies. Our approach yields improved image quality both visually and quantitatively.
ACKNOWLEDGMENTS
The authors want to thank Julia-Ann Scotton and Marina-Therese Macdonald for their help on human studies. This work was supported in part by grants R01-HL118261, R01-HL137230, P41-EB022544 and T32-EB013180 from National Institute of Health.
Footnotes
CONFLICT OF INTEREST
The authors have no conflicts to disclose.
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