Abstract
The neocortex is a multi-scale network, with intricate local circuitry interwoven into a global mesh of long-range connections. Neural activity propagates within this network on a wide range of temporal and spatial scales. At the micro scale, neurophysiological recordings reveal coordinated dynamics in local neural populations, which support behaviorally relevant computations. At the macro scale, neuroimaging modalities measure global activity fluctuations organized into spatiotemporal patterns across the entire brain. Here we review recent advances linking the local and global scales of cortical dynamics and their relationship to behavior. We argue that diverse experimental observations on the dimensionality and variability of neural activity can be reconciled by considering how activity propagates in space and time on multiple spatial scales.
Introduction
Behavior is driven by changes of neural activity throughout the brain. But even in the absence of behavior, the brain spontaneously generates massive tides of neural activity, which can be as large as the activity produced by external stimuli. Spontaneous activity (see Box 1) is present at all times and on all spatial scales — from single neurons to brain-wide networks — interacting with sensory inputs and affecting motor outputs. Due to varying patterns of ongoing activity, responses to identical stimuli are highly variable from trial to trial (see Box 1). Traditional computational theories dismiss ongoing activity as a nuisance, assuming that neural activity is composed of task-related ‘signals’ mixed with a random ‘noise’ (see Box 1). Accordingly, the signals can be recovered by averaging activity data over trials, and the brain could likewise overcome the noise by appropriate averaging over neural populations [1,2]. However, evidence is accumulating that ongoing activity is not debilitating noise, but well-orchestrated dynamics with distinct, reproducible structure both within local microcircuits and across the whole brain. A theory of how these dynamics contribute, if at all, to perception, decisions, and actions, is only beginning to emerge.
Box 1. Neural variability and dimensionality definitions.
Variability:
seemingly stochastic differences in neural responses under precisely controlled experimental conditions, for example, differences in response to repeated presentations of the exact same sensory stimulus. Neural response variability can be in part attributed to activity driven by spontaneous, task unrelated behaviors (e.g. spontaneous movements), to uncontrolled changes of behavioral states (e.g. arousal, motivation), and to internal network dynamics.
Spontaneous activity:
ongoing activity in the brain, which is not directly driven by sensory stimuli or overt behaviors. Spontaneous activity is most frequently studied in the absence of overt behavior (e. g. during rest, quiet wakefulness, or sleep). However, spontaneous activity, not driven by any apparent external causes, is also present during sensory stimulation and behavioral tasks and thus contributes to neural response variability.
Noise:
a variable component of neural response that is considered to be task irrelevant, not carrying meaningful signals, but merely obscuring neural representations and deteriorating computations.
Pairwise (noise) correlation:
Pearson correlation between activity fluctuations of two simultaneously recorded units (e.g. neurons, pixels, voxels) across repeated trials under the same experimental conditions. Noise correlation reflects not only random noise, but also other sources of variability, such as spontaneous movements, behavioral state changes, or cognitive factors such as learning and attention.
Principal components:
a set of linearly uncorrelated variables obtained from the original, possibly correlated variables via an orthogonal transformation, such that the first principal component accounts for as much variability in the data as possible, and each succeeding component in turn accounts for as much variance as possible under the constraint that it is orthogonal to the preceding components. Principal components can be found by eigendecom-position of the data covariance matrix, where the eigenvalues indicate the proportion of variance accounted for by each principal component.
Linear dimensionality:
the number of principal components required to account for a fixed proportion of variance in the data. For low-dimensional data, the variance is concentrated in the first few principal components with the largest eigenvalues. For high-dimensional data, the variance is distributed across many principal components with the eigenvalues of similar magnitude. Intuitively, the dimensionality corresponds to the extent of the linear subspace occupied by the data, or the number of separate patterns exhibited by the data.
The structure of spontaneous cortical activity is conventionally quantified by pairwise correlations [3] (see Box 1, but other methods have been used as well [4,5], including time-dependent correlations [6]). At the local scale of a cortical microcircuit, correlations have been computed between fluctuations of spiking activity in pairs of simultaneously recorded neurons, termed noise correlations [7,8]. At the global scale of the entire cortex, correlations have been computed between spontaneous activity in pairs of distant cortical regions recorded with functional magnetic resonance imaging (fMRI), electroencephalography (EEG) or magnetoencephalography (MEG) in the absence of a stimulus or a task, a measure known as the resting-state functional connectivity [9,10]. Such zero-lag correlations only reveal precise synchrony, in which fluctuations of neurons or distant cortical regions are aligned in time.
With recent advances in recording technologies and data analysis methods, we are now beginning to increasingly appreciate that cortical activity is structured both in space and time, propagating through cortical networks as spatiotemporal waves [11,12,13•,14,15]. Propagating waves are commonly observed on multiple spatial and temporal scales and across different experimental setups. Spatiotemporal waves bind distant nodes within a network: activity of two nodes with a small zero-lag correlation can have a tight relationship at a non-zero lag, corresponding to wave propagation. Thus, understanding cortical activity will require a theory that accounts for the spatiotemporal nature of cortical dynamics. In this review, we survey new experimental techniques, data analysis methods, and models that enable us to understand the structure of spatiotemporal cortical activity on different scales, and moreover, to link this structure across scales. We argue that such links have allowed the field to make progress on classic problems understanding response dimensionality and trial-to-trial variability. We also speculate about computational functions of spatiotemporal activity.
Dynamics on the local scale
On the local scale of a cortical microcircuit, the activity of many neurons can be recorded simultaneously using multi-electrode arrays [16] or optical imaging techniques [17]. These methods sample activity from local neural populations within spatial regions that are typically smaller than a cortical area. The widespread availability of neural population recordings has recently facilitated our understanding of how spontaneous activity fluctuations, measured with pairwise correlations, are distributed over neural populations.
In many studies, the activity fluctuations shared among neurons within a local population were found to be low-dimensional [18–22], meaning that only few activity patterns across neurons dominate population responses over time (Figure 1a). The low dimension of population activity is manifested in a rapidly decaying eigenvalue spectrum of the noise-correlation matrix, with only the first few eigenvalues set apart from zero (Figure 1b–d). In agreement with these observations, one-dimensional bulk measures such as local field potentials [23] or summed population firing rates [20,24] predict well a majority of pairwise noise correlations in local populations. Moreover, changes of behavioral and cognitive states, such as arousal, task engagement, and attention, appear to primarily modulate the shared, low-dimensional component of the population-wide fluctuations, without much effect on the uncorrelated fluctuations of single neurons [22,25••]. The picture of low-dimensional fluctuations was recently challenged by an experiment in which ~10,000 neurons from approximately 1 mm2 of mouse visual cortex were recorded simultaneously using two-photon calcium imaging [26••]. Within this large population, activity fluctuations were found to be high-dimensional, comprising at least 100 linear dimensions.
The puzzling differences in reported dimensionality of local activity fluctuations may be reconciled by considering how it is related to spatiotemporal dynamics in the local network. In a network model with spatially structured connectivity — mimicking local connectivity in the cortex — spontaneous fluctuations form spatial clusters that propagate laterally as local irregular waves (Figure 2a) [27]. The typical cluster size depends on the spatial connectivity structure and neural excitability. If a neural population is sampled from a local region that is smaller than a typical cluster size, then most sampled neurons will equally participate in each wave passing through this region, simultaneously increasing and decreasing their activity. As a result, fluctuations of this population will be low-dimensional (Figure 2b,c). If, however, a neural population is sampled from a region that is larger than a typical cluster size, then different sampled neurons will participate in different local waves passing through remote parts of the network at different times, hence fluctuations will be high-dimensional (Figure 2b,c). This analysis predicts that fluctuations in a population of tightly interconnected neurons (such as within a cortical column) should be very low-dimensional. Indeed, in spiking activity recorded from all layers of single columns in the primate visual cortex, fluctuations are virtually one-dimensional: a column spontaneously transitions between phases of high and low spiking activity nearly synchronously across layers (Figure 2d,e) [25••,28]. Differences in spatial distribution of measured neurons and in network connectivity structure may therefore at least partially explain diverse observations about dimensionality of cortical activity.
However, the spatial intermixing of topologically separate networks and the dependence of dynamics on behavioral state both complicate the picture. The spatial network structure supporting wave propagation is not always aligned with anatomical dimensions of the cortex (depth and lateral distance). For example, in the mouse visual cortex, connectivity is stronger between cells with similar orientation preference, which are mixed in the cortical tissue as ‘salt and pepper’ (imagine shuffling the pixels in Figure 2a). Therefore, a population sampled from a local cortical region may correspond to sampling from distant regions in the network rearranged according to the connectivity structure and thus exhibit high-dimensional fluctuations, such as in Ref. [26••]. Intriguingly, recordings made with large-scale Neuropixels electrode arrays from ~3000 neurons distributed across brain regions showed similar dimensionality as the V1 populations, suggesting that coordinated spatiotemporal dynamics may extend far beyond local populations and even beyond cortex [26••]. In addition, the spatial scale of spontaneous waves can be altered by changes in neural excitability due to variations in the level of neuromodulators accompanying changes of behavioral states (Figure 2f) [29]. Consequently, the dimensionality of correlated fluctuations in the same neural population may be modulated as a function of behavioral state. These considerations suggest that although correlations provide us a glimpse into organization of cortical activity, a full understanding will require elucidating how spatiotemporal activity propagation is related to network connectivity and how it is modulated during changes of behavioral states.
Dynamics on the global scale
On the whole-brain scale, the activity from many regions can be recorded simultaneously with neuroimaging methods such as fMRI, EEG or MEG. fMRI provides complete volumetric images (at ~1 mm resolution), but measures slow (~1 s) hemodynamic responses associated with neural activity. EEG and MEG detect synchronized neural activity with high temporal resolution (~1 ms) but low spatial resolution (~1 cm). In these recordings, the structure of the whole-brain spontaneous activity is traditionally examined with pairwise correlations between brain regions, called functional connectivity. Functional connectivity analyses reveal that resting-state fluctuations are bilaterally symmetric and organized in multiple distributed networks of regions that activate and deactivate together, called resting-state networks [9,10,30,31]. Resting-state networks closely correspond with the large-scale anatomical connectivity of the human cortex [32]. Moreover, electrophysiological recordings in humans confirm synchronous patterns of neural activity in distant, often bilateral brain regions [33].
Recently, wide-field optical imaging methods enabled direct measurements of neural activity across broad regions of cortex at significantly higher spatial (<100 μm) and temporal (~10 ms) resolution, and substantially enhanced signal-to-noise levels. Using large preparations with voltage sensitive dyes (VSDs) [34] or with transgenic expression of fluorescent voltage [35•,36] or calcium sensors [37•,38–40,35•,41•,42••], a majority of both hemispheres of the mouse cortex can be imaged at once. The ability to observe the global cortical activity concurrently in space and time unveiled its striking spatiotemporal organization: spontaneous activity consists of bilaterally symmetric patterns that involve each part of cortex and occur both during behavior [39,41•,42••] and in the absence of overt behaviors (Figure 3a) [34]. Similar to the much slower resting state networks observed with fMRI, the spatial organization of these functional activity patterns are linked to known anatomical pathways [43•].
To what extent do distributed activity patterns in humans and rodents have spatiotemporal dynamics? A recent series of studies quantified the lead-lag relationships in the activity of human brain regions in resting-state EEG [45,46] or fMRI [47•,48,49]. These analyses revealed that global activity travels slowly through the cerebral cortex along multiple, stereotypical spatiotemporal trajectories, and the directions of propagation differ across behavioral states, such as sleep and wakefulness [48,49]. The global activity propagation is largely unidirectional within conventional resting-state networks, which may therefore correspond to points along global spatiotemporal trajectories. In rodents, recordings during anesthesia reveal similar large, globally propagating waves, at multiple timescales [37•,50,51]. As is the case in human slow-wave sleep [52], under some conditions these waves are observed to primarily travel anterior to posterior (Figure 3b, upper panels). Moreover, different sets of cortical areas, sharing high functional connectivity within each set, are coactivated at different moments during the propagating global waves, indicating that spatial information contained in functional-connectivity networks is embedded in the phase of the global waves (Figure 3b, lower panels) [37•]. The extent to which global spontaneous dynamics in the cortex of awake, un-anesthetized rodents can be described as waves [50,51] versus independent activation of patterns [43•,38] remains unclear. Methods to describe and quantify spatiotemporally extended patterns such as waves when they propagate not just in one consistent direction, but through the same medium in multiple directions [53], will be valuable for better understanding the large-scale patterns observable on the global scale.
Interactions between local and global dynamics
Local and global neural dynamics co-exist within the same cortical networks and may interact across scales. Recent studies have begun to document such interactions. Understanding the relationship between activity across local and global scales may clarify the neural mechanisms of behavior, both goal-directed and spontaneous. For example, local one-dimensional dynamics within single cortical columns (Figure 2d) are modulated by allocation of spatial attention, the impact of which is confined to local regions within cortical maps [25••]. However, they are also modulated by changes of arousal [25••], which affect neural activity on the brain-wide scale and may relate to aspects of task performance such as engagement [54]. Modulation of global dynamics with arousal is also consistent with arousal-related local modulation of correlated fluctuations [55–58].
Widespread dynamics across cortex do not only reflect arousal changes, but are also related to behavior. Overt movements, with or without any goal-directed task, were recently shown to dominate rodent neural activity on the local [26••], cortex-wide (Figure 3c) [41•], and brain-wide scales [26••,59]. These studies recorded neural activity concurrently with multi-dimensional behavioral information in mice, including pupil-dilation [55,56], running [60], and whisking, as well as videos of facial and body movements. Surprisingly, they found that signals related to movements dominate neural activity across the entire cortex, dwarfing task-related variables and even sensory stimuli [41•,59]. Moreover, in visual cortex, sensory inputs do not interrupt this ongoing signal, but add onto it a representation of visual stimuli in orthogonal dimensions [26••].
Comparably, another study, using wide-field imaging, found that bilaterally coordinated activity dominates unilateral responses to local visual stimuli and adds to them, explaining much of the trial-to-trial response variability [35•]. This work builds on prior studies that examined the relationship between local ongoing activity and stimulus driven activity [61,28] by revealing that much of the local ongoing activity is in fact related to global cortical dynamics. The bilateral component of response variability must be accounted for when considering the relationship between neural activity and behavior. A model fit to these data predicted behavior accurately by taking a difference between activity in left and right visual cortex, thus removing the bilateral component, and the model therefore predicted that inactivation of visual cortex unilaterally should lead to an increase in ‘hallucinations’ — reports of ipsilateral stimuli not actually present — rather than ‘blindness’ — failure to report present stimuli [42••]. Strikingly, this prediction was borne out both qualitatively and quantitatively with no parameter adjustments. This result would not have been predictable from an examination of local visual cortical activity in one hemisphere alone. Together, these results argue that much local response variability can be accounted for by considering larger scales of neural activity, both large local populations and cross-hemispheric activity.
Experimental techniques are now emerging that enable simultaneous measurements of neural activity on the local and global scales, and thus can more directly probe their interactions. Specifically, cellular-resolution two-photon calcium imaging or electrophysiological recordings of a local microcircuit have been combined with simultaneous wide-field calcium imaging of the entire bilateral cortex [44••,62••,63,64]. Such multi-scale recordings permit uncovering how different neurons within a local circuit participate in the brain-wide dynamics. In particular, functional connectivity maps between a single neuron and the entire cortex reveal that neighboring neurons in one cortical area are frequently coupled with distinct distal cortical regions (Figure 3d) [62••,44••]. One possibility is that heterogeneity of neurons’ functional connectivity may be aligned with diversity of their long-distance axonal projection patterns, which form multiple information processing streams [65–68]. In addition, some of the diversity of global correlations is accounted for by the genetic identity of the neurons (VIP-expressing interneurons versus non-VIP-expressing putative pyramidal neurons) [62••], consistent with differences of inputs and outputs of these types. However, a neuron’s functional connectivity depends at least in part on behavioral state [44••,69] (cf. Figure 2f), and may differ dramatically depending on the timescale under consideration [70], suggesting that anatomical pathways alone will not fully explain these features.
Another promising experimental direction is the use of novel large-scale electrophysiological techniques [71] to record populations of neurons distributed across the brain [26••,59]. This approach enables not only linking of local and global scales, but also incorporation of information about subcortical activity and dynamics, which are deeply intertwined with those of cortex [72,73]. With these new datasets available, computational analyses and models based on multi-scale measurements of neural dynamics with cell-type resolution can now begin to address the sources and mechanisms of local-global interactions.
Computational functions of local and global dynamics
What computational functions can be served by cortical dynamics on multiple spatiotemporal scales? Canonical models of information processing in the brain are oblivious to dynamics, portraying cortical neurons as static feature detectors that build increasingly complex representations through successive stages of cortical hierarchy [74–76]. However, state-of-the-art static feedforward architectures fall behind primates in recognizing ‘challenging’ images that require additional recurrent processing [77]. Since a shallow recurrent neural network is equivalent to a very deep feedforward network (e.g. ResNet) [78], it is possible that the brain’s recurrent circuitry efficiently implements what artificial systems achieve by stacking more feedforward layers, whereby the local dynamics of each layer act as additional nonlinear transformations. In addition, decoders of neural responses do not generalize across time [77,79], suggesting that the brain’s representation of images may be not static, but rather encoded in dynamic and transient neural trajectories. Moreover, static feedforward models are vulnerable to input perturbations, such as noise [80] or partial occlusions [81•], to which humans are robust. The robustness of feedforward architectures can be improved by augmenting the output layer with recurrent dynamics [81•], which reinforces the idea that recurrent dynamics may serve to ‘fill in’ the missing information or apply priors for resolving ambiguity. One may wonder, why would the cortex need to resolve ambiguity at the level of lower sensory areas, rather than just at the highest level? Perhaps this relates to another key distinction between the cortex and modern artificial networks: whereas feedforward networks are ‘read out’ only at the last stage, nearly every cortical area — from primary sensory cortices onwards — projects to thalamus and striatum [82], and a majority project to the midbrain [83,84]. Thus nearly every area potentially influences behavior directly, hence local and global dynamics may be important for correcting representations at each level.
Models of neural dynamics have been developed to account for specific computational mechanisms characteristic of frontal and association cortices, such as pattern completion [85], working memory and decision-making [86,87], selective attention [88], and executive control [89], as well as of motor cortex [90]. In these models, task-relevant computations are usually implemented by a single local circuit, for example, a recurrent neural network with connection weights optimized to transform a set of time-dependent inputs into desired outputs [91]. Such models, operating on a single spatial scale, lack the modular, multi-scale organization of the neocortex. Augmenting functional models of neural dynamics with a hierarchical structure and global dynamic interactions across hierarchical modules could potentially extend their cognitive capacity [92]. For example, a hierarchy of dynamical modules could represent a hierarchy of competing behavioral goals, and global dynamic interactions among the modules could resolve lower-level goals in service of high-level ones [93]. Parts of a hierarchical network could also engage in mental simulations of future actions and outcomes [94] or other metacognitive processes underlying flexible intelligent behavior. Another fascinating idea is that ongoing, spontaneous dynamics during slow-wave sleep may play a protective role against catastrophic forgetting (overwriting old memories with new ones) and enable brain networks to undergo continual learning [95], or to enhance learning from limited experience [96], both of which remain a challenge for artificial systems.
Taken together, with few exceptions, the existing hierarchical models of cortical processing lack dynamics, while the existing dynamical models lack the modular and hierarchical organization across spatial scales. Combining these computational elements in a unified architecture could lead to more powerful models that closer match the brain’s cognitive capacities. Mechanistic and descriptive models of multi-scale neural dynamics should be developed to provide links with neurophysiological data and to reveal computational functions of the local and global dynamics in the brain. At the same time, normative models should be developed to predict what types of local and global dynamics could support efficient encoding of sensory stimuli, behavioral states and cognitive operations.
Conclusions
New experimental technologies continually push the boundaries for observing cortical activity across multiple spatial and temporal scales. Large-scale cortical recordings reveal massive spontaneous neural activity within local microcircuits and on the global scale. Novel analysis methods and models indicate that on each scale, neural activity is spatiotemporal, propagating along trajectories defined by the local and long-range connectivity structure and modulated by behavioral states. Interactions between dynamics on different scales reflect immediate behavioral goals. Theoretical frameworks now must account for the multi-scale, spatiotemporal nature of cortical activity to reveal its computational and behavioral consequences. Such multi-scale, spatiotemporal theories are beginning to clarify long-standing debates about dimensionality and variability of cortical responses, and they stand to unveil more about the enigmatic functions of brain’s spontaneous activity in the future.
Acknowledgements
Research supported by the NIH grant R01 EB026949 (TAE), the Swartz Foundation (TAE), and the Cold Spring Harbor Laboratory (TAE). The authors would like to thank E. Shea-Brown, D. Shimaoka, C. Stringer, M. Pachitariu, S. Musall, and M. Lengyel for helpful feedback.
Footnotes
Conflict of interest statement
Nothing declared.
References and recommended reading
Papers of particular interest, published within the period of review, have been highlighted as:
• of special interest
•• of outstanding interest
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