Abstract
Ericoid mycorrhiza can improve the competitiveness of their host plants at the ecosystem level. The ability of ericoid mycorrhizal fungi to thrive under harsh environmental conditions suggests that they are capable of decomposing plant organic matter. This study aims to characterize 2 strains of root-cultivable endophytic fungi, RooDK1 and RooDK6, from Rhododendron ovatum Planch using colony and hyphal morphology, molecular analysis, observations of mycorrhiza, and investigations of adaptation to different sources of organic matter. Nitrogen utilization was also investigated by assessing protease production and growth on different nitrogen sources. Morphological studies indicated that both species are ericoid mycorrhizal fungi; our molecular studies confirmed RooDK1 as Oidiodendron maius and classified RooDK6 as Pezicula ericae. We observed that only RooDK1 can assist in host plant survival by degrading organic matter. This species also secretes protease and has the highest nitrate reductase activity of these 2 endophytes. Thus, RooDK1 has a greater ability to help the host plants thrive in a harsh habitat.
Keywords: Ericoid mycorrhiza, Ericoid mycorrhizal fungi, Nitrogen utilization, Nitrate reductase activity, Organic matter, Protease
Introduction
Ericaceae species are distributed worldwide, spanning Europe and North America in the northern hemisphere to Australia in the southern hemisphere. Their habitats contain tundra, boreal forests, tropical mountain cloud forests, dry sclerophyll forests, sphagnum wetlands, dry sand plains, and mor-humus heathlands [1, 2]. Characteristics of these environments include extreme acidity, poor nutrient availability, and the accumulation of organic matter [3]. Heathlands also contain polyphenol complexes [4, 5]. These environmental factors play an important role in the selection of this highly conserved group of mycobionts [6]. Common microorganisms are unable to decompose organic matter in environments with such high fungitoxicity [7]. Fungal symbionts are critically positioned to exert control over the exchange of carbon and nutrients between sources and sinks in these biomes. Therefore, it is important to gain a better understanding of their functional capabilities [8].
Host plants can gain more nutrients from soils under stress conditions if associated with ericoid mycorrhiza fungi (ERMFs) [9–12]. These fungi improve the competitiveness of host plants at the ecosystem level [13]. ERMFs absorb nutrients from soils rich in phenolic compounds and organic matter and transport them to host plants, thereby supporting their growth in harsh habitats [4, 14]. Oidiodendron maius Barron [15–17], a well-known ERMF symbiont of ericaceous plants, significantly degrades organic matter [11]. The RooDK1 endophyte O. maius, first identified in Taiwan, was isolated from Rhododendron ovatum [18], along with RooDK6 [19]. The RooDK1 endophyte was identified as Oidiodendron maius using traditional morphology [18]. For both RooDK1and RooDK6, the molecular characterization and classification as EMRFs remain to be determined. This study aims to classify these two endophytes based on rDNA internal transcribed spacer (ITS) sequencing and morphological studies, to determine whether they are ERMFs, and to investigate whether they assist in the survival of host plants growing on different types of organic matter and nitrogen sources.
Materials and methods
Strains
A total of 23 endophytes were isolated from the roots of Rhododendron ovatum Planch located in the Da-Ken area in central Taiwan (longitude, 120° 44′ 0.7″ E; latitude, 24° 10′ 39.1″ N; altitude, 1008 m). Of these endophytes, only two (RooDK1 and RooDK6) passed the screening and selection [19]. Specimens of RooDK1 and RooDK6 were deposited in the Forest Mycobiont Laboratory of National Chiayi University, and their ITS genomic sequences are in GenBank (RooDK1, MF611694; RooDK6, MF611695).
Colony morphology and growth
Colonies of these two endophytes were transferred to 2% malt extract agar media (20 g/L; agar, 15 g/L) and potato dextrose agar media (39 g/L) and incubated in a growth chamber at 23 °C. The growth rate of colonies was determined after 14 days of growth, and colony morphology was observed daily [3, 20, 21].
Hyphae morphology
Hyphal morphology was determined using slide cultures. After 7 days of culture on slides, 1% lactophenol containing cotton blue was applied to stain the hyphae, and observations were made using a light microscope; photos were taken for records [22].
DNA extraction, sequencing, and phylogenetic analysis
DNA was extracted using standard methods [21]. Genomic DNA was extracted using Puregene Proteinase K. Total fungal DNA was used as a template for amplification using primers ITS1-F and TW13. PCR products were sequenced commercially (Genomics BioSci and Tech Company, New Taipei, Taiwan). Sequences were assembled, and related sequences were identified using BLAST searches. Phylogenetic relationships were analyzed using Molecular Evolutionary Genetics Analysis (MEGA). Bootstrapping was performed using maximum likelihood analysis.
Inoculation with endophytes
The method of pure resynthesis was used [14, 16]. After surface cleaning, the seeds of R. ovatum were sterilized with 35% hydrogen peroxide solution (H2O2) for 1 min and rinsed 3 times with sterilized distilled water, then transferred to test tubes containing 1% agar for germination. Germinated seedlings were transplanted to modified Mitchell and Read medium (NH4Cl, 32 mg/L; CaCl2‧7H2O, 43.5 mg/L; MgSO4‧7H2O, 10 mg/L; KCl, 5.5 mg/L; FeCl3, 3.75 mg/L; sucrose, 2 g/L; KH2PO4, 210 mg/L; pyridoxine, 100 μg/L; thiamine, 100 μg/L; agar, 10 g/L). After 7 days of incubation, the aseptic seedlings were inoculated with these 2 endophytes and grown in a growth chamber (23 °C, 16 h/day, 5000 lx).
Observation of root morphology
The roots of inoculated seedlings were sampled and cleaned with water in a supersonic oscillator after 2 months of incubation [23]. A stereomicroscope was used to observe the morphology of root associations [24], and the roots were stained with aniline blue for staining root studies [25].
Adaption of seedlings to growth on organic matter
Organic matter was prepared using a modified method of Piercey et al. [11] and Lin et al. [14]. Organic matter adaptation was evaluated using the method of Lin et al. [14]. The adaptation ability of these two endophytes was determined by placing a 0.5-mm3 plug of endophyte mycelium onto 2 g (dry weight) of organic matter moistened with 10 mL d-H2O in a glass tube (25 × 150 mm). When the seedlings had 2 cotyledons, they were transplanted into the sterilized glass tube with organic matter and grown in a growth chamber (2 °C and 16 h of light at a maximum illumination of 5000 lx). Three replicates were prepared for each endophyte, and 3 uninoculated tubes served as controls.
Nitrogen utilization under different nitrogen sources
Nitrogen utilization was assessed by growth in axenic liquid cultures (25 mL), with the addition of (NH4)2HPO4, Ca(NO3)2, glutamine, and bovine serum albumin (BSA), and MMN to the base medium, with a final nitrogen concentration of 106 mg/L, a C:N ratio of 39:1, and pH adjusted to 5.5 [26]. Following incubation for 17 days at 23 °C in the dark, the mycelia were harvested, dried overnight at 80 °C, and the biomass determined [27].
Protease production
To determine the level of protease production by each of these 2 endophytes, a 3-mm diameter piece of mycelium was inoculated onto a skim-milk agar plate (skim-milk, 10 g/L; agar, 10 g/L) and maintained at 23 °C in a growth chamber. Observations were made after 5 days of culture. If the medium turned transparent, it was determined that the endophyte had secreted protease [28, 29].
Nitrate reductase assay
Nitrate reductase activity in fungal filtrates was assayed according to the procedure modified by Jaworski [30], Ho and Trappe [31], and Hamedi et al. [32]. These 2 endophytes were cultured in MMN medium with different nitrogen sources [26]. After 17 days of incubation, the mycelia were separated from the medium by filtration and washed extensively with sterile distilled water to prevent any contamination by the medium. Filtered mycelia then were mixed with 5 mL of assay solution (0.1 M KNO3 [1 mL], 100% 2-propanol [0.25 mL], distilled water [1.25 mL], and 0.2 M KH2PO4 [1.25 mL]; pH 7.5) and incubated at 25 °C in the absence of light for 24 h. The reaction was stopped by adding the 1 mL of a solution of 1% sulfanilic acid in 3 M HCl. To this mixture was added 1 mL of 0.02% N-(1-naphthyl ethylene) diamine. 2HCl to serve as an indicator of the nitrite formation in the solution. The absorbance of the resultant pink solutions at 540 nm was measured using a spectrophotometer (U-2000, Hitachi, Tokyo, Japan). The standard curve was determined using KNO2.
Statistical analyses
Statistical analysis was performed using the software Statistical Package for the Social Science (SPSS 12.0) (Illinois, USA) for windows. All data are presented as the mean of 3 separate experiments ± standard error (n = 3). Differences between endophytes were analyzed using Turkey’s multiple range test. p ≤ 0.05 was considered significant.
Results
Strain morphology
After 14 days, colonies of RooDK1 cultured on 2% MEA at 23 °C were white in color (Fig. 1a), and their average growth rate at 23 °C was 0.86 ± 0.01 mm/day; colonies of RooDK1 cultured on PDA at 23 °C were a light-yellow color (Fig. 1b), and the average growth rate of the colony at 23 °C was 0.98 ± 0.01 mm/day. After treating the slide cultures for 7 days, conidiophores (160–250 × 2.48–3.7 μm) and conidia (2.5–4.5 × 1.0–2.5 μm) were visible under light microscopy (Fig. 1c and d).
Fig. 1.
Morphology of the RooDK1 endophyte. a Colony morphology on 2% MEA. b Colony morphology on 2% PDA. c and d Conidiophore (arrow) and conidia (arrowhead)
After 14 days, colonies of RooDK6 cultured on 2% MEA at 2 °C were brown in color (Fig. 2a), and the average growth rate of the colony at 23 °C was 1.69 ± 0.01 mm/day; colonies of RooDK6 cultured on PDA at 23 °C were brown with white edges (Fig. 2b), and the average growth rate of the colony at 23 °C was 2.57 ± 0.04 mm/day. After treating the slide cultures for 7 days, moniliform hyphae (Fig. 2c) and dark septate hyphae (Fig. 2d) were visible under light microscopy.
Fig. 2.
Morphology of the RooDK6 endophyte. a Colony morphology on 2% MEA. b Colony morphology on PDA. c Moniliform hyphae (arrow). d Dark septate hyphae (arrowhead)
Molecular phylogenetic analysis
The genetic diversity of these ERMFs was successfully demonstrated based on the phylogenetic relationships determined using rDNA ITS [33]. Taxonomic affinities were assigned to RooDK1 and RooDK6 based on BLAST sequence similarity analysis (http://blast.ncbi.nlm.nih.gov/Blast.cgi) including several closely matched sequences. The RooDK1 ITS sequence was similar to those of Oidiodendron maius and clustered with Oidiodendron maius with strong bootstrap values (99%) (Fig. 3), suggesting that the RooDK1 endophyte belonged to Oidiodendron maius.
Fig. 3.
Maximum likelihood phylogenetic tree based on rDNA ITS sequence data from RooDK1 and RooDK6 endophytes isolated from the root systems of Rhododendron ovatum with Oidiodendron spp. and Pezicula spp. and selected fungal species from GenBank. Sequences in italic type mean sequences from ex-type or type isolate. Numerical values above the branches indicate bootstrap percentiles from 1000 replicates. Horizontal branch lengths are proportional to the scale of base pair substitutions
RooDK6 ITS sequences closely match those of Pezicula ericae (EF413591) [34] and P. ericae (HQ889712); therefore, these organisms are grouped in maximum likelihood analysis (83% bootstrap) (Fig. 3). These results suggest that RooDK6 is P. ericae.
Observations of mycorrhiza
Sterilized seeds of R. ovatum germinated after 14 days, with most germination noted after 30 days [35]. RooDK1-inoculated seedlings exhibited vigorous growth after 2 months of cultivation (Fig. 4a). Under a stereomicroscope, viewing of root associations revealed conidia and conidiophores (Fig. 4b) and a covering of hyphae (Fig. 4c). Hyphal complexes were observed in the cortical cells of root associations of resynthesized seedlings under light microscopy (Fig. 4d).
Fig. 4.
Morphology of RooDK1-inoculated seedlings after culture on MMR medium for 70 days. a Seedlings inoculated with RooDK1. b Conidiophore and conidia (arrow) cover the surface. c Root associations (arrows). d Hyphal coils (arrows)
After cultivating for 2 months, RooDK6-inoculated seedlings exhibited vigorous growth (Fig. 5a). Using a stereomicroscope, we observed that the root associations were covered by hyphae (Fig. 5b) and were swollen (Fig. 5c). Hyphal complex structures were observed in cortical cells of root associations using light microscopy (Fig. 5d).
Fig. 5.
Morphology of RooDK6-inoculated seedlings after culture on the MMR medium for 70 days. a Seedlings inoculated with RooDK6. b Hyphae (arrow) cover the surface. c Root associations (arrow). d Hyphal coils (arrow)
Ability to use organic matter
After 5 days of incubation, Roo6-inoculated seedlings and controls began to appear withered, while RooDK1-inoculated seedlings exhibited vigorous growth. On the 21st day of incubation, the RooDK1-inoculated seedling still exhibited vigorous growth, while all RooDK6-inoculated seedlings and controls appeared withered (Fig. 6). The RooDK1-inoculated seedlings had a significantly greater fresh weight (1.47 ± 0.15 mg) than did RooDK6-inoculated and control seedlings (0.90 ± 0.06 mg and 0.77 ± 0.12 mg, respectively; p < 0.05) (Fig. 7).
Fig. 6.
Morphology of Rhododendron ovatum seedlings after culture on organic matter for 21 days. a Seedlings inoculated with RooDK1. b Seedlings inoculated with RooDK6. c Controls
Fig. 7.
Biomass after culture with inoculated or control seedlings for 21 days. Values with the same letter did not differ significantly (p = 0.05)
Nitrogen utilization from different nitrogen sources
The nitrogen utilization of these 2 endophytes was assessed by their growth on a variety of nitrogen sources (Table 1). After incubation for 17 days, the RooDK1 endophyte yielded the highest dry weight of glutamine (51.53 ± 4.72 mg) as compared to (NH4)2HPO4 (30.15 ± 5.43 mg) and BSA (27.63 ± 0.73 mg). A low dry weight of Ca(NO3)2 (8.48 ± 0.89 mg) was observed. The RooDK6 endophyte exhibited a similar trend. The highest dry weight was for glutamine (39.50 ± 1.75 mg), as compared to that of BSA (31.10 ± 0.86 mg) and (NH4)2HPO4 (25.68 ± 1.02 mg). The lowest dry weight (18.18 ± 2.23 mg) was noted for Ca(NO3)2.
Table 1.
Comparison of biomass between mycelia inoculated with either endophyte after incubation in media differing in nitrogen source
| Nitrogen source | Dry weight (mg) | |
|---|---|---|
| RooDK1 | RooDK6 | |
| (NH4)2HPO4 | 30.15 ± 5.43b | 25.68 ± 1.02b |
| Ca(NO3)2 | 8.48 ± 0.89c | 18.18 ± 2.23c |
| BSA | 27.63 ± 0.73b | 31.10 ± 0.86b |
| glutamine | 51.53 ± 4.72a | 39.50 ± 1.75a |
All values represent the mean ± standard deviation of 3 replicate cultures
Values in the same column with different letters differ significantly (p ≤ 0.05)
Protease production
The secretion of proteases from these 2 endophytes was confirmed by their ability to react with the skim-milk agar plates. Skim-milk agar plates bearing the RooDK1 endophytes turned transparent after 5 days (Fig. 8a), while those with RooDK6 showed no change (Fig. 8b).
Fig. 8.
Representative protein medium after incubation with 2 endophytes for 5 days. The change in medium from opaque to transparent indicates protease production of. a RooDK1 endophyte. b RooDK6 endophyte
Nitrate reductase assay
After 17 days of incubation, the nitrate reductase activity of RooDK1 differed significantly depending on which nitrogen source was used (p < 0.05) (Table 2). RooDK1 grown on medium with glutamine showed the greatest nitrate reductase activity (80.25 ± 8.25 μg NO2−/h.g) compared with that grown on (NH4)2HPO4 (34.08 ± 6.27 μg NO2−/h.g), Ca(NO3)2 (2.46 ± 0.21 μg NO2−/h.g), or BSA (1.06 ± 0.10 μgNO2−/h.g).The nitrate reductase activity of RooDK6 did not differ significantly between samples grown on different nitrogen sources (p > 0.05) (Table 2).
Table 2.
Comparison of nitrate reductase activity in mycelia inoculated with either endophyte incubated in media differing in nitrogen sources
| Nitrogen source | Nitrate reductase activity (μg NO2−/h.g) | |
|---|---|---|
| RooDK1 | RooDK6 | |
| (NH4)2HPO4 | 34.08 ± 6.27b | 1.74 ± 0.39a |
| Ca(NO3)2 | 2.46 ± 0.21c | 2.09 ± 0.27a |
| BSA | 1.06 ± 0.10c | 1.49 ± 0.06a |
| Glutamine | 80.25 ± 8.25a | 1.29 ± 0.21a |
All values represent the mean ± standard deviation of 3 replicate cultures
Values in the same column with different letters differ significantly (p ≤ 0.05)
Discussion
Our morphological and molecular analysis revealed that the RooDK1 endophyte produces conidia and conidiophores on mycelium as anamorphs (Fig. 1c and d). Results of the rDNA ITS analysis (Fig. 3) indicate that the identity of RooDK1 is Oidiodendron maius, which is consistent with the findings of Wang and Lin [18]. We observed that RooDK6 produces only moniliform hyphae (Fig. 2c) and stained septates (Fig. 2d) on mycelium. rDNA ITS analysis (Fig. 3) indicated that the identity of RooDK6 is Pezicula ericae which is a newly recorded species in the fungal flora of Taiwan. O. maius is more frequently detected in the field [36], and this is the first time it has been isolated in Taiwan [18].
Numerous fungi have been isolated from the roots of Ericaceae and Epacridaceae. These isolates have not been identified at the species level because they do not form telemorphs or conidia [37, 38]. However, ITSs of rDNA recently were used to successfully identify phylogenetic relationships and elucidate the genetic diversity of ERMs [33, 39]. Clearly, the contributions of ITS analyses to ERMF research are significant.
ERM are Endomycorrhizae that have hyphal complexes or hyphal coils in root epidermal cells that are visible microscopically in stained roots [37, 40]. Sterilized seeds germinated after 14 days, with most germination noted after 30 days [35]. After 2 months of incubation, all mycelia inoculated with either endophyte exhibited vigorous growth, and hyphal complexes were observed in the cortical cells of root associations in resynthesized seedlings (Figs. 4d and 5d). The results suggest that these 2 endophytes can form ERM with R. ovatum and that they are ERMFs.
Major nutrients in the Ericaceae habitat, including nitrogen, are bound in organic complexes and thus cannot be used by plants. However, many studies have demonstrated that ERMFs can help their host plants to use this organic matter for growth [11, 14]. Organic matter from Ericaceae species is extremely acidic, has a high C/N ratio, and over 30% of its content is phenolic compounds [5, 6, 14]. ERMFs such as Oidiodendron maius [11] and Helotiales sp. Rf32 and Rf28 have been shown to use nutrients from these phenol-rich environments [14]. Furthermore, we observed that resynthesized seedlings not only have the features of ERMs but are also capable of decomposing more organic matter than the control seedlings to provide nutrients needed for the growth of the endophytes themselves and the host plants [14]. The results of this study demonstrate that while both RooDK1 and RooDK6 are ERMF, only RooDK1 has the ability to survive on organic matter (Fig. 6). Thus, not every ERMF can make nutrients from organic matter available for host plant growth.
We observed that the type of nitrogen source available had a significant effect on the fungus biomass. The use of glutamine as a nitrogen source resulted in the greatest biomass in both endophytes (Table 1). This result differs from that of other studies. For example, O. maius from field salal (Gaultheria shallon) roots yielded the greatest biomass when grown on (NH4)2HPO4 [41]; three strains of Oidiodendron sp. from R. fortune roots yielded the greatest biomass when grown on (NH4)2HPO4 or Ca(NO3)2 [42, 43]. Therefore, our results demonstrate that ERMFs isolated from different habitats have different characteristics, as has also been reported by Rice and Currah [22].
We also observed that nitrate reductase activity (NRA) differed between RooDK1 and RooDK6. The highest NRA in RooDK1 was observed using glutamine as the nitrogen source (Table 2).
Taken together, our findings indicate that RooDK1 has the ability to secrete protease and yields the greatest biomass and highest NRA in glutamine. The RooDK1 endophyte is capable of decomposing organic matter to provide nutrients needed for the growth of the host plant.
Conclusions
This study characterizes 2 root-cultivable endophytic fungi, RooDK1 and RooDK6, from Rhododendron ovatum. Based on molecular analysis, RooDK1 is classified as Oidiodendron maius, while RooDK6 is classified as Pezicula ericae. RooDK6 is a newly recorded species in the fungal flora of Taiwan, and both of these endophytes are ERMFs. RooDK1 can assist in host plant survival by degrading organic matter, secretes protease, and has the highest NRA of these 2 endophytes. Thus, RooDK1 has a greater ability to help the host plants thrive in a harsh habitat.
Footnotes
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