Table 2.
Some motifs learnt by CSCRSites are aligned with the known motifs and the associated genes.
| Associated Genes | Known Motifs ID | Known Sequence | Learnt Motifs ID | Learnt Sequence | Overlap | E-Value |
|---|---|---|---|---|---|---|
| DAZAP1 | RNCMPT00013 | UAGGUAG | KER_29 | UAGGUAGG | 7 | 0.0031 |
| FMR1 | RNCMPT00016 | GGACAAG | KER_632 | GGCACAGG | 7 | 0.0290 |
| HNRNPK | RNCMPT00026 | CCAACCC | KER_959 | CAACCAGU | 6 | 0.0429 |
| HNRNPL | RNCMPT00027 | ACACACA | KER_793 | ACACACAG | 7 | 0.0019 |
| HNRPLL | RNCMPT00178 | ACACACA | KER_793 | ACACACAG | 7 | 0.0030 |
| HuR | RNCMPT00032 | UUAUUUU | KER_78 | UUUAUUUU | 7 | 0.0054 |
| RNCMPT00112 | UUUGUUU | KER_900 | UUUCUUUC | 7 | 0.0098 | |
| RNCMPT00117 | UUUGUUU | KER_900 | UUUCUUUC | 7 | 0.0070 | |
| RNCMPT00136 | UUGGUUU | KER_395 | AUUGAUUU | 7 | 0.0202 | |
| IGF2BP2 | RNCMPT00033 | ACAAACA | KER_512 | AAACACAG | 7 | 0.0401 |
| IGF2BP3 | RNCMPT00172 | ACAAACA | KER_793 | ACACACAG | 7 | 0.0110 |
| KHDRBS1 | RNCMPT00169 | AUAAAAG | KER_837 | UAUUAAAG | 7 | 0.0254 |
| MATR3 | RNCMPT00037 | AAUCUUG | KER_801 | GAAUCUUG | 7 | 0.0021 |
| PABPC5 | RNCMPT00171 | AGAAAAU | KER_113 | AGAAAGUG | 7 | 0.0060 |
| PABPN1 | RNCMPT00157 | AGAAGAC | KER_183 | AGAAAACA | 7 | 0.0109 |
| PCBP1 | RNCMPT00186 | CCUUUCC | KER_577 | CCUUCCCU | 7 | 0.0055 |
| PCBP2 | RNCMPT00044 | CCUUCCC | KER_577 | CCUUCCCU | 7 | 0.0021 |
| PTBP1 | RNCMPT00268 | CUUUUCU | KER_366 | UUUUCUUU | 6 | 0.0208 |
| RNCMPT00269 | ACUUUCU | KER_269 | UACUUCCC | 7 | 0.0051 | |
| RBM46 | RNCMPT00054 | AAUCAAU | KER_153 | GAAUCAAU | 7 | 0.0208 |
| SAMD4A | RNCMPT00063 | GCUGGAC | KER_608 | UGCUGGCC | 7 | 0.0347 |
| SNRNP70 | RNCMPT00070 | GAUCAAG | KER_197 | GAAUCAAG | 7 | 0.0065 |
| SRSF1 | RNCMPT00107 | GGAGGAA | KER_37 | GGGAGGAA | 7 | 0.0391 |
| SRSF10 | RNCMPT00019 | AGAGAAA | KER_824 | AGAGAAAA | 7 | 0.0373 |
| RNCMPT00089 | AGAGAAA | KER_824 | AGAGAAAA | 7 | 0.0299 | |
| TIA1 | RNCMPT00165 | UUUUUUC | KER_842 | UUCCUUCU | 7 | 0.0122 |
| U2AF2 | RNCMPT00079 | UUUUUUC | KER_842 | UUCCUUCU | 7 | 0.0036 |
| ZC3H14 | RNCMPT00086 | UUUGUUU | KER_900 | UUUCUUUC | 7 | 0.0111 |