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. 2019 Nov 19;58(23):16292–16301. doi: 10.1021/acs.inorgchem.9b02866

Calcium Valence-to-Core X-ray Emission Spectroscopy: A Sensitive Probe of Oxo Protonation in Structural Models of the Oxygen-Evolving Complex

Zachary Mathe †, Dimitrios A Pantazis ‡, Heui Beom Lee §, Richard Gnewkow ∥, Benjamin E Van Kuiken †, Theodor Agapie §, Serena DeBeer †,*
PMCID: PMC6891804  PMID: 31743026

Abstract

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Calcium is an abundant, nontoxic metal that finds many roles in synthetic and biological systems including the oxygen-evolving complex (OEC) of photosystem II. Characterization methods for calcium centers, however, are underdeveloped compared to those available for transition metals. Valence-to-core X-ray emission spectroscopy (VtC XES) selectively probes the electronic structure of an element’s chemical environment, providing insight that complements the geometric information available from other techniques. Here, the utility of calcium VtC XES is established using an in-house dispersive spectrometer in combination with density functional theory. Spectral trends are rationalized within a molecular orbital framework, and Kβ2,5 transitions, derived from molecular orbitals with primarily ligand p character, are found to be a promising probe of the calcium coordination environment. In particular, it is shown that calcium VtC XES is sensitive to the electronic structure changes that accompany oxo protonation in Mn3CaO4-based molecular mimics of the OEC. Through correlation to calculations, the potential of calcium VtC XES to address unresolved questions regarding the mechanism of biological water oxidation is highlighted.

Short abstract

Calcium valence-to-core X-ray emission spectroscopy (VtC XES) is established as a sensitive probe of the calcium coordination environment in a series of binary calcium salts and in molecular model complexes relevant to the oxygen-evolving complex (OEC) of photosystem II. The origins of the observed spectral trends are rationalized within a molecular orbital framework through correlations to density functional theory calculations. The potential of calcium VtC XES to differentiate between proposed S1-state models in the OEC is highlighted.

Introduction

Calcium, the fifth most abundant element in the earth’s crust, fills many important roles in natural and synthetic chemistry.1 Ca2+ is the main cation in bone, shell, and microstructured biomaterials with remarkable mechanical properties.1−4 It is often employed as an enzymatic cofactor, including within the photosynthetic oxygen-evolving complex (OEC), and is considered “the best communicator” in biological signaling.5−10 Calcium is a key component in cements and many industrial chemical processes, and molecular calcium complexes can effect alkene and imine hydrogenations, polymerizations, and even the nucleophilic alkylation of benzene.11−15 Partly because it is such a “green” metal compared to the often rare or toxic stalwarts of transition-metal chemistry, interest in calcium catalysts and metal–organic frameworks is increasing.11,14,16−19

Despite these important applications, tools for probing the calcium chemical environment remain limited.20 As a d0 metal, it is inaccessible by UV/vis or electron paramagnetic resonance (EPR) spectroscopies, and, hence, solid-state NMR spectroscopy and X-ray absorption spectroscopy (XAS) are the dominant methods for characterization. Calcium XAS, including both K-edge and extended X-ray absorption fine structure (EXAFS) analysis, can provide valuable geometric information, including coordination numbers, bond lengths, and symmetry, but from which limited ligand electronic structure can be inferred.4,21−25 The NMR parameters of 43Ca can distinguish similar ligand sets and geometries, even showing sensitivity to changes beyond the first coordination sphere. However, the sparse information obtained in a 43Ca NMR experiment reflects a host of chemical factors that may be difficult to deconvolute. Further, despite recent technological and methodological advances, such experiments remain challenging because of the poor NMR properties (7/2 nuclear spin and low gyromagnetic ratio) and low natural abundance of 43Ca.20,23

K-edge valence-to-core X-ray emission spectroscopy (VtC XES) offers a direct probe of an element’s coordination environment, including ligand identities and protonation states, and its application to calcium could greatly extend current techniques for the study of calcium systems in general and the OEC in particular. In a K-edge XES experiment, a 1s electron is ionized from the absorbing atom by an X-ray, leaving a core hole; then as another electron fills that hole, a second X-ray is emitted and its energy measured. Such fluorescence processes can be described with a molecular orbital (MO) framework using the canonical orbitals from a density functional theory (DFT) calculation, the eigenvalues of which approximate electron ionization energies.

For calcium Kβ XES in particular, transitions from Ca 3p orbitals form the intense Kβ1,3 feature; because of the empty d shell of calcium, the Kβ′ feature, which arises from p–d exchange in open-shell transition metals, is not observed. VtC transitions contribute weaker satellite peaks, with Kβ″ and Kβ2,5 transitions derived from ligand valence s and p orbitals, respectively (Figure 1). VtC transitions are dipole-allowed, with an intensity derived from a small amount of absorber np character mixed into the donor orbital.26−29 VtC spectra thus reflect ligand ionization energies, and they can be correlated with calculations to provide a map of (a subset of) the occupied ligand valence MOs.30−32 Transition-metal VtC XES has been used to identify a light atom unresolvable by EXAFS33 and to measure ligand protonation state34−37 and bond activation.38−40 Unlike pre-edge XAS, VtC XES is generally not sensitive to the symmetry of the coordination environment.35,41

Figure 1.

Figure 1

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Diagram of calcium Kβ X-ray emission lines.

The goal of the present study is to investigate the potential of VtC XES as a probe of the calcium coordination environment and specifically to assess its potential relevance to studies of the OEC of photosystem II (PSII), the active site of photosynthetic water oxidation and one of the most important structures in biology. The OEC consists of a Mn4CaO5 core, arranged as a Mn3CaO4 cubane connected to the fourth pendant manganese by two oxygen bridges. The calcium is additionally ligated by two protein carboxylates, each bridging the calcium and a manganese, and two water molecules.9 In each turnover, the OEC proceeds through the five states S0–4, removing four electrons and four protons to convert two substrate water molecules to one oxygen molecule. A great variety of studies across disciplines have elucidated much of the structure and mechanism of the OEC, with EPR and manganese XAS and XES providing the most important spectroscopic contributions.42−49 Important questions remain, however, especially regarding the identities of substrate oxygen atoms, bonding arrangements, and oxygen protonation states in the different S states.

Here, we demonstrate that calcium VtC XES, supported by quantum-mechanical calculations, offers a promising probe of Mn3CaO4 systems. The spectral trends and character of the donor orbitals are established using highly symmetric salts. Then, structural mimics of the OEC, previously developed by Agapie and co-workers,50 reveal the sensitivity of the technique to Mn3CaO4 oxo protonation. Finally, its potential applicability to the OEC is demonstrated using two computational models of the S1 state.

Materials and Methods

Samples

Seven calcium salts were studied: the halides CaF2, CaCl2, CaBr2, and CaI2 and the oxygen-coordinating salts CaO, Ca(OH)2, and CaCO3 (see Table 1 for properties and section S2 for rendered structures). All salts were purchased from Sigma-Aldrich in the highest-available purity and used without further purification.

Table 1. List of Compounds and Their Properties.

compounda coordination approximate local symmetry at calcium halogen Pauling electronegativity53 average Ca–X distance (Å)
CaF2 8 Oh 3.98 2.366
CaCl2 6 Oh/D4h 3.16 2.745
CaBr2 6 Oh/D4h 2.96 2.885
CaI2 6 Oh 2.66 3.117
CaO 6 Oh   2.405
Ca(OH)2 6 Oh/D4h   2.368
CaCO3 6 Oh/D4h   2.358
1 = LMn3CaO4(ON4O)(OAc) 8 Cs   2.500
1H = [LMn3CaO3(OH)(ON4O)(OAc)][OTf] 8 Cs   2.500
2 = LMn3CaO4(OAc)3(DMF) 7 Cs   2.406
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a

OTf = triflate; OAc = acetate; X = any ligand.

Three structural mimics of the OEC were prepared according to published procedures (Figure 2).50,51 They each consist of a Mn3CaO4 core supported by the 1,3,5-triphenylbenzene-based ligand L, which coordinates to each manganese atom with one pyridyl nitrogen and one alkoxide. Compounds 1 and 1H contain the ligand N,N′-dimethyl-N,N′-diacetylethylenediamine dioximate (ON4O), which coordinates to the calcium atom via two amine and two oximate nitrogen lone pairs and to two manganese atoms via the oximate oxygen lone pairs; an acetate bridges the calcium and the third manganese atom. 1H differs from 1 by protonation of the cubane oxygen atom opposite the acetate and by a triflate counterion. In compound 2, three acetates bridge from manganese atoms to the calcium, and a dimethylformamide (DMF) caps the calcium.

Figure 2.

Figure 2

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Full structure of 1 with the two polydentate ligands, ON4O and L, labeled and truncated structures of 1, 1H, and 2.

Samples were prepared with poly(tetrafluoroethylene) or poly(ether ether ketone) (PEEK) cells with windows of either 38-μm Kapton tape or 5-μm polypropylene film. To avoid spectral broadening due to incident-beam penetration effects,52 CaF2, CaCl2, the oxygen-coordinated salts, and the molecular complexes were prepared as thin powders either spread on Kapton tape or pressed into 100-μm-deep divots machined into PEEK. CaBr2 and CaI2, which have short attenuation lengths, were pressed into pellets to minimize signal loss due to reabsorption of photons by the heavy halides. Aluminum filters (800 nm) were used to attenuate UV/vis fluorescence when necessary. Hygroscopic or oxygen-sensitive samples were prepared in an inert-atmosphere glovebox. To minimize radiation damage, the molecular complexes were mounted on a coldfinger with a base temperature of 11–14 K, although the temperature at the sample was estimated at 60–80 K.

All data were collected using the LabXES, an in-house dispersive spectrometer that utilizes a gallium metal jet X-ray tube to obtain a high incident photon flux and a full-cylinder von Hamos geometry to maximize the solid angle of detection.52,54 The source was operated at 250 W, the detector was in the postfocus position, and total collection times ranged from 18 to 136 h per sample. The sample and spectrometer chamber were kept at pressures of 10–7–10–6 mbar to minimize signal attenuation. A single-photon-counting algorithm with manually chosen energy windows was used to reject signals from other elements, and a linear subtraction was applied to remove the background due to randomly oriented photons reflected by the spectrometer chamber.54,55 The absolute energy of the instrument was calibrated to the CaCO3 mainline maximum at 4012.2 eV, the value of which was obtained by an initial calibration to the second-order Bragg reflection of the Kα1 line of copper metal, set to 4023.9 eV. (The Cu Kα1 line is at 8047.8 eV.56) The absolute energy of the instrument was found to drift between measurements within ±0.2 eV because of mechanical instability in the X-ray source focusing optic. For this reason, all experimental spectra were manually shifted to align the mainlines with that of CaCO3 (4012.2 eV). This allowed us to robustly assess the shift in the VtC features relative to a fixed mainline position. The sample radiation damage was assessed by comparing partial sum spectra and conservatively discarding data from damaged spots before collecting additional spectra if needed. For example, for complex 1, an initial measurement was performed for 12 h. A spectrum generated from data collected during hours 9–12 was slightly different from spectra generated from hours 0–3, 3–6, and 6–9. All data after hour 8 were discarded, and a further 16 measurements of 8 h each were performed on fresh sample spots and the resulting spectra summed.

Computational Details

All DFT calculations were performed with the ORCA 4.1 suite of quantum chemistry programs, using a combination of functional, basis sets, and approximations well-established for the calculation of transition-metal VtC XES.26,27,35,57−59 The BP86 functional60,61 was used together with the zero-order regular approximation (ZORA)62 to account for relativistic effects. The D3 dispersion correction63,64 was used for geometry optimizations of the molecular complexes, and conductor-like polarizable continuum solvation65 was used with an infinite dielectric for molecular complexes and OEC models. Relativistically recontracted ZORA-def2-TZVP basis sets were used for all calculations except that of CaI2 because this basis was unavailable for iodine; for this compound, regular def2-TZVP basis sets were used instead.66 The resolution of the identity approximation was employed with SARC/J67 (def2/J68 for CaI2) auxiliary basis sets to reduce the computational cost of calculations. Dense ORCA integration grids were used: Grid7 for calcium and manganese and Grid6 for all other atoms.

Transitions were calculated using a simple one-electron method using canonical ground-state Kohn–Sham (KS) orbitals.35 Because test calculations for CaCl2, CaCO3, and 1H showed negligible quadrupole contributions to spectra, only dipole transitions were included to reduce computational cost. The characters of the MOs were investigated both by Löwdin population analysis (using cclib69) and by the plotting of isosurfaces with isovalues of ±0.05 (using VMD70). Spectra were calculated from DFT transitions using an asymmetric pseudo-Voigt profile chosen to approximate the unique response function of the LabXES instrument (see section S9).54

Calcium salts were modeled using the spin-restricted KS formalism. The crystal environments were approximated using an established embedding scheme to allow direct comparison to molecular systems.24,71−74 At the center of each model was a quantum cluster (QC) equipped with the aforementioned basis sets. QCs were centered on a calcium atom and included directly ligating counterions, as well as the nearest three hydroxide ions in each of the adjacent trioctahedral layers in the case of Ca(OH)2. Each QC was embedded in a spherical region of point charges (PC) with a radius of 50 Å. Between the QC and PC was a boundary region composed of capped effective core potentials (cECPs), which served to prevent the unphysical flow of electrons from the QC to the positive point charges. Each cECP consisted of a point charge and a valence-only basis set from the SDD family.75,76 Coordinates were obtained from a proton-resolved neutron diffraction structure77 for Ca(OH)2 (see section S1) and X-ray diffraction (XRD) structures78−82 for all others. Hypothetical CaCl2 and CaBr2 crystals with varying Ca–X distances were constructed by scaling the respective embedded model.

Molecular complexes and OEC models were calculated using the spin-unrestricted KS formalism. XRD crystal structures were available for 1H and a variant of 2 with a capping tetrahydrofuran instead of DMF.50 These coordinates were used to construct initial guesses for geometry optimizations, with the proton and triflate removed from 1H to obtain a starting structure for 1 and a DMF manually inserted in 2. Optimized Ca–O, Mn–O, and Mn–Mn distances in the cubane of 1H had a mean absolute deviation from those of the crystal structure of 0.007 Å, demonstrating the accuracy of the method and validity of the optimized structures of 1 and 2. The published OEC models83 were not reoptimized.

For a consistent comparison with the experimental data, all calculated spectra were also manually shifted to align the mainlines with that of CaCO3. Then an absolute energy shift of +71.1 eV was applied to correct for the errors in core orbital energies inherent in the method, chosen to best align the Kβ2,5 features (see section S1).26,35 All observed and calculated spectra were normalized within 3990–4050 eV to an integrated area of 1000. Peak energies and intensities were obtained after subtraction of the tail of the mainline, fit using two Donaich functions.

Results and Discussion

Figure 3 presents normalized calcium Kβ XES spectra for all species measured in the present study (left panel) and the corresponding DFT calculations (right panel), clearly showing that the general experimental trends are reproduced by theory. The detailed origins of certain features will be discussed in the subsequent sections; here, we briefly summarize the main features. The spectra may be divided into two regions: the mainlines spanning 4005–4024 eV and the Kβ2,5 regions spanning 4024–4038 eV (Figure 3). The mainlines are composed of strong, approximately atomic Kβ1,3 transitions (Ca 3p → 1s) at ∼4012 eV, as well as weaker Kβ″ transitions derived from donor orbitals of primarily ligand s character and transitions from multiply excited states.84−86 When the calculated spectra are shifted to align the calculated and experimental Kβ2,5 features (vida supra), the calculated mainlines appear blue-shifted by 2 eV with respect to the calculations, reflecting an underestimation of the energy gap between the Ca 3p and ligand valence p orbitals.

Figure 3.

Figure 3

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All observed (left) and calculated (right) calcium VtC XES spectra, with the Kβ2,5 regions inset.

There are notable differences between the general structure of these spectra and that of the transition-metal VtC spectra: (a) because calcium has no d electrons to exchange-couple with the p holes of the final states, there are no Kβ′ features; (b) the calcium Kβ2,5 features have double the intensity of those typically studied in transition metals;31,38,39,87 (c) in transition-metal VtC XES, the Kβ″ peaks are typically energetically separated from the Kβ1,3 spectra and have received much attention because of their sensitivity to properties of chemical interest and ready interpretation.33,38,49,88 For the present calcium systems, however, Kβ″ transitions are not well-resolved from the mainlines, and so the Kβ2,5 features will be the focus of the remaining investigation. (See sections S3 and S4 for the further assignment and discussion of the mainline transitions.) Despite the closed-shell and ionic-bonding nature of Ca2+ (no bonding orbitals involving calcium were found by Pipek-Mezey localization), there is evidently sufficient orbital mixing in both the salts and molecular complexes to allow intense VtC transitions.

Halide Series

The Kβ2,5 spectra of the calcium halides present a useful series with which to consider the physical origins of transition energies and intensities. Each spectrum consists of a single peak due to transitions from the halide p orbitals, which, in each salt, have approximately equal energy because of the highly symmetric crystal environment (Figure 4). The ligand donor orbitals can be considered mixtures of X– highest occupied MOs, and the trend in the peak energies intuitively follows that of the halogen atom electronegativities (Table 1). The more tightly bound p electrons of the lighter halides lie closer in energy to a Ca 1s hole than do those of the later halides, resulting in lower X-ray emission energies.

Figure 4.

Figure 4

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Observed and calculated Kβ2,5 spectra of the calcium halides, with individual calculated transitions plotted as sticks.

It is well-understood from transition-metal studies that VtC transitions are dipole-allowed because of the absorber p character in the valence-hole final state. In terms of MOs constructed from a finite nucleus-centered basis set, a transition from a valence MO to a metal 1s MO has dipole intensity because of small contributions of the metal p basis functions to the valence MO composed primarily of ligand-centered functions. This mixing of the metal p and ligand valence character is expected to be inversely dependent on both the metal–ligand distance and the energy gap between the corresponding metal and ligand orbitals in the isolated-atom limit.

To investigate the relationship between the Kβ2,5 transitions and bond length, spectra were calculated for a series of hypothetical CaCl2 crystals with varying average Ca–Cl distances (Figure 5). The Kβ2,5 peak areas decrease sharply with the distance, as expected from the dependence on the Ca p character mixed into halide-centered p MOs. The trend fits well to an exponential decay, a simple function that describes the overlap integral of two spherical orbitals. The CaCl2 and CaBr2 spectra with a Ca–X distance of 2.865 Å (green traces in Figure 5) demonstrate the influence of the atomic radius: the larger Br– anion has more orbital mixing with Ca2+, resulting in a 36% greater peak area.

Figure 5.

Figure 5

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Calculated Kβ2,5 spectra for a series of hypothetical CaCl2 crystals with peak areas and energies correlated to the average Ca–Cl distance. A spectrum of CaBr2 with a distance of 2.865 Å (the same distance as the green CaCl2) is plotted with a dashed line.

The peak energies decrease linearly at shorter distances, reflecting both stabilization of the Cl p orbitals by the positively charged calcium and destabilization of the Ca 1s orbitals by the proximity of the anions (see section S5 for plots of the orbital energies). Compared to that of the 2.765 Å CaCl2 model, the 2.865 Å CaBr2 peak has only a 6% greater area, yet its energy is 0.4 eV higher. This energy difference confirms that the ligand identity, in addition to the Ca–ligand distance, contributes to the peak energy.

Taken together, the observed and calculated halide Kβ2,5 spectra demonstrate the following: (a) the peak energies reflect both the intrinsic ionization energies of the ligands and the coordination environment; (b) the peak intensities, which depend on the mixing of Ca p character into ligand orbitals to produce dipole-allowed transitions, depend on the ligand identity and Ca–ligand distance. In real systems, the ligand identity and bond length are inseparable; we cannot determine, for example, whether the high Kβ2,5 intensity of CaF2 is wholly explicable by the short bonds and small Ca 3p–X np orbital energy gap or whether the high coordination number is also important.

Oxygen-Coordinating Salts

Observed and calculated Kβ2,5 spectra for the oxygen-coordinated salts are presented in Figure 6, again with good agreement. In each salt, all calcium atoms are equivalent and coordinated to six equidistant oxygen atoms, and the Kβ2,5 transitions derive from valence orbitals that have primarily O p character. For CaCO3, there are two clearly separated peaks, each with a smaller shoulder. Plotting of the donor orbitals shows that these four features can be assigned to transitions from carbonate MOs with, in order of increasing energy, σ*, π, π, and π* character (see section S6 for orbital plots).

Figure 6.

Figure 6

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Representative donor orbital plots for the low-energy (A) and high-energy (B) features of Ca(OH)2. Observed (C) and calculated (D) spectra of the oxygen-containing salts.

A comparison between CaO and Ca(OH)2 provides the first example of the power of calcium VtC XES to resolve oxygen protonation. In the CaO spectrum, there is a single Kβ2,5 peak, while in Ca(OH)2, the Kβ2,5 region is split into two peaks, the more intense being of energy similar to that of the CaO peak and the less intense being 4 eV lower. The origin of the Ca(OH)2 splitting is made clear by plotting the donor orbitals. Taking the O–H axis as the z axis, the higher-energy peak is composed of transitions from donor orbitals with O px and py character, while the lower-energy peak is due to the lower-energy O pz donors, which overlap the protons. The approximately 2:1 intensity ratio is also explained by this model: because each of the three sets of pi orbitals has a similar occupation and orientation with respect to the calcium, each contributes a similar transition intensity. Thus, the spectral splitting reflects stabilization of the O pz orbitals by the protons, an effect analogous to stabilization of the hydroxo s orbitals observed in oxo/hydroxo-bridged manganese dimers.34

Synthetic Models of the OEC

Having established the spectroscopic and computational methods with simple, symmetric systems, we turn to a series of three structural models of the OEC developed by Agapie and co-workers.50,51 The complexes each contain a Mn3CaO4 core supported at the manganese atoms by the large hexadentate ligand L. In complex 1 and its oxo-protonated derivative 1H, the calcium is coordinated by two amine and two oximate nitrogen lone pairs, as well as an acetate. In complex 2, the calcium is coordinated by three acetates and a DMF.

Kβ2,5 spectra of the molecular complexes are presented in Figure 7. Clear differences are seen among all three in the high-energy region, 4031–4034 eV. The high-energy features are reasonably reproduced by the calculations: there is a decrease in intensity upon protonation of 1 to 1H, and the trailing edge of 2 is about 0.4 eV lower in energy. The differences between 1 and 1H cannot be described as a shift of intensity to lower energy, as might be hypothesized from the case of CaO and Ca(OH)2, demonstrating the necessity of quantum-chemical calculations in interpreting VtC XES in complex systems.

Figure 7.

Figure 7

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Observed and calculated spectra of the three molecular complexes.

Upon protonation of 1 to 1H, there are significant changes in the molecular geometry around the calcium, including a general expansion of the cubane (Table 2). Two of the cubane Ca–O bond lengths increase, while the Ca–N bonds to the ON4O amines decrease; the Ca–O bond to the protonated oxo (O2) is actually one of the least perturbed distances. To investigate whether the differences in the Kβ2,5 spectra simply reflect the changes in geometry, a spectrum was calculated for 1noH, a structure of 1 constructed by removing the proton and triflate counterion from the optimized structure of 1H, maintaining the zero net charge (Figure 8). The 1noH spectrum is less similar to 1H than 1 is in the accurate high-energy region. Thus, calcium Kβ2,5 spectroscopy directly probes the cubane electronic structure and not only the geometry, as is the case for EXAFS or XRD.

Table 2. Ca–X Distances (Å) in Molecular Complexes.

  1 1H 1H – 1
Ca–O1 2.410 2.505 +0.095
Ca–O2 2.387 2.391 +0.004
Ca–O3 2.428 2.471 +0.043
Ca–OAc 2.377 2.362 –0.015
Ca–N1 2.548 2.542 –0.006
Ca–N2 2.668 2.604 –0.064
Ca–N3 2.656 2.601 –0.055
Ca–N4 2.522 2.524 +0.002
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Figure 8.

Figure 8

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Calculated spectra of 1, 1H, and 1noH, a model constructed by removing the proton and triflate from 1H.

In the simple case of the calcium salts, analysis of the donor MOs allowed unambiguous assignment of the spectral features to chemically intuitive aspects of the electronic structure. However, in the case of the OEC model complexes, such results are not obtained because of the mixed character, extreme delocalization, and large number of MOs. (See section S7 for Löwdin decomposition of the donor orbitals of 1 and 1H and a discussion of the limitations of such an analysis.) However, plotting MOs can still provide some qualitative insight into the donor space of these complexes. Using complex 1 as an example, the 79 orbitals with the strongest transition intensities (out of 334 with some intensity) were assigned to one or more of 10 categories to provide a qualitative description of the origins of the spectrum (Figure 9). The high-energy region is composed of donors with cubane antibonding (O p and Mn d), oximate antibonding, and nitrogen lone-pair character.

Figure 9.

Figure 9

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Qualitative orbital character in the Kβ2,5 region of complex 1, determined by visualization of the 79 donor orbitals with the most intense transitions in this energy range.

Clear differences were observed in the high-energy Kβ2,5 features of complexes 1, 1H, and 2, and it was shown that the differences reflect changes in the overall cubane electronic structure and not just distortion of the calcium coordination geometry that accompanies protonation. These results demonstrate the potential applicability of calcium VtC XES to the study of complex systems like the OEC.

Computational Models of the S1 State of the OEC

Motivated by the good correlation between the experiment and theory in the preceding sections, we now investigate the potential of calcium VtC XES for studies of the OEC. Although S1, the dark-stable resting state of PSII, has been the focus of decades of crystallographic and spectroscopic studies, including a 1.95 Å X-ray free electron laser (XFEL) crystal structure,9 discrepancies in the data,89,90 inconsistencies with otherwise-reliable calculations,83,91−93 and inherent limitations of the methods89 have kept the exact arrangement and bonding of the OEC unresolved.42 A key issue is the position of O5, which in the 1.95 Å structure has Mn–O bond distances apparently incompatible with the electronic structure. Spectroscopic and computational studies generally indicate that, while O5 is likely deprotonated in the S1 state, the crystal structure reflects some population of an O5-protonated S0 state and/or heterogeneity in the S1 state itself.42,83,89,91,93−99 A significant hindrance to study of the S1 state is its S = 0 total spin, which severely limits the application of EPR. Hence, there is a clear demand for novel approaches to characterize the S1 state.

To demonstrate the potential for calcium VtC XES to contribute to our understanding of PSII, spectra were calculated using two models of the S1 state, published in a 2015 study by Krewald and co-workers (Figure 10).83 The authors constructed a series of models of the active site of PSII based on extensive prior work and with particular care to avoid artifactual rearrangement of the calcium environment; models include eight crystallographic water molecules and all second-sphere residues hydrogen-bonded to ligands of the first coordination sphere. The two models evaluated here, S1H-2 and S1H-3b, are tautomers that differ by the protonation and bonding of O5 and W2: in S1H-2, O5 is a μ3-oxo and bonded to Ca, Mn3, and Mn4, while in S1H-3b, it is a μ3-hydroxo bonded to Ca, Mn3, and Mn1. For these calculations, a narrower, symmetric line-broadening function was used to demonstrate the data quality that might be obtained using a high-resolution Bragg optic rather than the highly annealed pyrolitic graphite optic employed in the present study (see section S9).

Figure 10.

Figure 10

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Truncated structures of the two computational models of the OEC, S1H-2 and S1H-3b.

The calculated S1 spectra are clearly distinguishable (Figure 11): the high-energy feature has similar intensity in both models, while the trailing edge is shifted 0.2 eV lower in S1H-3b, and the middle- and lower-energy features have dramatic changes. The relative differences in the spectra are dissimilar to those observed between 1 and 1H, again demonstrating the complex, nonlocal effects of oxygen protonation observed in the molecular compounds.

Figure 11.

Figure 11

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Kβ2,5 spectra of the two S1 state models, calculated with a high-resolution symmetric line-broadening function.

Conclusions

Calcium VtC XES has been established as a sensitive probe of the calcium coordination environment, utilizing a unique in-house dispersive spectrometer in combination with DFT calculations. First, examination of a series of binary salts revealed the character of Kβ2,5 features within an intuitive MO framework. Spectra of Mn3CaO4 molecular systems showed the sensitivity of the technique in complex environments, in particular to the effects of cubane oxo protonation. Metal–ligand covalency is evidently not necessary for VtC XES to report on the ligand electronic structure. Improved methods of transition analysis for such systems with highly delocalized canonical orbitals are under development in our laboratories.

Spectra calculated for two models of the S1 state of PSII demonstrated the theoretical power of calcium VtC XES to probe unresolved structural features of the OEC. As shown in a calcium EXAFS study, it is possible to produce active PSII depleted of all calcium atoms except two: the one of interest in the OEC, plus another in the light-harvesting complex II.21 Thus, with the high flux and energy resolution available at modern synchrotron and XFEL beamlines, calcium VtC XES experiments on PSII are technically plausible and could make important contributions to our understanding of biological water splitting.

Acknowledgments

The authors acknowledge the Max Planck Society for funding. Z.M. thanks Yvonne Brandenburger and Fabian Strunk for technical expertise with the LabXES spectrometer, as well as Dr. Ragnar Bjornsson and Dr. Vijay Chilkuri for discussions of MO theory. Z.M. acknowledges the Deutscher Akademischer Austauschdienst for M.Sc. scholarship funding. T.A. is grateful to the NIH (Grant R01-GM102687B) for supporting the synthetic model studies.

Supporting Information Available

The Supporting Information is available free of charge on the ACS Publications website at DOI: 10.1021/acs.inorgchem.9b02866.

  • Computational details, analysis of the Ca Kβ mainlines, MO population analysis, and additional figures mentioned in the main text (PDF)

The authors declare no competing financial interest.

Supplementary Material

ic9b02866_si_001.pdf (4MB, pdf)

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