Table 3.
Nucleotide and amino acid identity of CHN-SC2015 compared to 59 reference strains in GenBank.
| Area | Nucleotide and Amino Acid Identity (%) | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Complete Genome | ORF1a | ORF1ab | S | E | M | NS6 | N | NS7 | |
| China | 97.7–99.1 | 98.0–99.1/ 98.0–99.4 |
98.1–99.1/ 98.0–99.6 |
97.0–99.3/ 96.0–99.5 |
96.4–100/ 95.2–100 |
97.7–99.8/ 96.8–99.5 |
96.5–100/ 92.6–100 |
97.1–99.9/ 95.3–100 |
97.5–100/ 94.0–100 |
| Japan | 97.9–98.4 | 98.0–98.5/ 92.6–99.2 |
98.3–98.7/ 95.5–99.4 |
97.6–98.3/ 97.8–98.6 |
99.2–99.6/ 100 |
98.5–98.8/ 99.1 |
98.2–98.9/ 96.8–97.9 |
98.7–99.2/ 99.7–100 |
99.2–99.5/ 97.5–98.5 |
| South Korea | 98.5–98.6 | 98.4–98.5/ 99.1–99.2 |
98.6/ 99.3–99.4 |
98.1–98.3/ 98.2–98.6 |
99.6/100 | 98.6/99.1 | 98.9/ 97.9–98.9 |
99.0/100 | 99.2–99.3/ 97.5–98 |
| USA | 98.1–98.6 | 98.4–98.5/ 99.0–99.2 |
98.6–98.7/ 99.3–99.4 |
98.1–98.3/ 98.1–98.6 |
99.2–100/ 100 |
98.3–98.8/ 98.6–99.1 |
98.6–99.3/ 97.9–98.9 |
98.9–99.2/ 99.4–100 |
99.2–99.5/ 97.5–99.0 |
| Southeast | 97.5–98 | 97.8–98.0/ 98.2–98.6 |
97.9–98.1/ 98.7–99 |
96.0–96.7/ 96.8–97.8 |
99.6–100/ 100 |
98.2–99.1/ 98.6–99.1 |
98.2–98.9/ 98.9 |
97.6–99.1/ 98.8–99.7 |
97.5–99.2/ 93.5–97.5 |