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. 2019 May 11;35(23):5011–5017. doi: 10.1093/bioinformatics/btz357

Fig. 5.

Fig. 5.

Positive predictive value. This figure shows the PPV (PPV=TP/P) obtained with different sample sizes. The inference is carried out from simulated data for p  =100 with n ranging from 10 to 150 in steps of size 10, tested at α = 0.05. The Panels (a) and (b) show the PPV using Benjamini-Hochberg (BH)-adjusted P-values for multiple testing with  δ = 0.01 (or 49 correlations) and δ = 0.03 (or 148 correlations). Three approaches are compared: ENF (dot with dashed line), Shrunk MLE (square with dotted line), and MC with 15 iterations (triangle with continuous line). Symbols (and bars) represent the average (±2 SEs) over 25 repeated simulations. The upper horizontal axis shows the average shrinkage intensity λ¯ rounded to two digits