Abstract
The generation of pyridynes from diyne nitriles is reported. These cyano-containing precursors are analogs of the triyne substrates typically used for the hexadehydro-Diels-Alder (HDDA) cycloisomerization reactions that produce ring-fused benzynes. Hence, the new processes described represent aza-HDDA reactions. Depending on the location of the nitrile, either 3,4-pyridynes (from 1,3-diynes containing a tethered cyano group) or 2,3-pyridynes (from 1-cyanoethyne derivatives containing a tethered alkyne) are produced. In situ trapping of these reactive intermediates leads to highly substituted and functionalized pyridine derivatives. In several instances, unprecedented pyridyne trapping reactions are seen. Differences in reaction energetics between the aza-HDDA substrates and that of their analogous HDDA (triyne) substrates are discussed.
Graphical Abstract

The cycloisomerization reaction of substrates containing a conjugated 1,3-diyne and a remotely tethered alkyne (the diynophile) (cf. 1, Figure 1a) to give benzyne intermediates1 has proven to be quite general and fairly robust.2 This so-called hexadehydro-Diels-Alder reaction,3 when carried out in the presence of suitable trapping partners (T2-T1), provides a platform for (i) discovering new modes of reactivity, (ii) uncovering fundamental mechanistic details about aryne reactivity, and (iii) accessing complex benzenoid products (cf. 1-Ar). Notably, the core benzene ring is created in a de novo fashion.
Figure 1.
a), b) Trimethylene-linked cycloisomerizations to the reactive aryne intermediate for a) the all-carbon HDDA reaction and b) each of two classes of aza-HDDA reactions with a nitrogen atom at either terminus of the 1,3,8-nonatriyne substrate. c) Engagement of a nitrile with a tethered alkynylallene moiety in an aza-PDDA reaction.11
aCalculated free energy change for the conversion of a prototypical HDDA substrate to its corresponding benzyne or pyridyne {DFT [M06–2X/6–31+G(d,p) with SMD(CHCl3)]}
It is natural to ask what might result upon replacing the remote carbon atom of the monoyne or of the 1,3-diyne in 1 with a nitrogen atom—that is, would the nitrile analogs 2 (nitrile as diynophile) or 3 (nitrile as an element of a cyanoalkyne) enter into analogous transformations (Figure 1b) to produce highly substituted pyridine products such as 2-Ar or 3-Ar by way of pyridyne4 intermediates? This would comprise an aza-hexadehydro-Diels-Alder reaction (aza-HDDA). We distinguish these two variants, arbitrarily, as class 1 vs. class 2 processes, respectively (Figure 1b).
A potentially mitigating challenge for the success of an aza-HDDA process is the fact that thermal cycloaddition reactions of nitriles are much more rare than those of alkynes. In part, this stems from the fact that a C≡N triple bond is inherently stronger than that of a C≡C bond.5 Nitriles do engage in metal-catalyzed net cycloadditions. Notable are nitrile plus azide (3+2)-cycloadditions to give tetrazoles6 and nitrile + alkyne + alkyne, net [2+2+2]-cycloisomerizations to give pyridines.7 Nitriles also can serve as a dienophile, either as activated species such as a sulfonylcyanide8 or in high-temperature hetera-Diels-Alder reactions,9 as well as with certain more reactive alkenylallenes10 or alkynylallenes as the 4-atom partner in (4+2) net cycloisomerization reactions. The latter of these last two examples constitutes an aza-pentadehydro-Diels-Alder (aza-PDDA) cyclization,11 an example of which is shown in the cycloaromatization of nitrile 7 to give pyridine 9 via the reactive intermediate 8 (Figure 1c). This previously reported process is mechanistically quite distinct from the aza-HDDA reactions described here.
Some of the energetic challenge posed by a potential aza-HDDA reaction can be discerned from the relative free energy changes computed for the all-carbon HDDA reaction of 1,3,8-nonatriyne (4 to 4*, Figure 1a) vs. each of the class 1 and class 2 aza-HDDA cyclizations (5 to 5* and 6 to 6*, respectively; Figure 1b). The all-carbon HDDA is substantially more exergonic than for either of the aza-HDDA cyclizations, suggestive of higher activation energies for the cyclizations of the aza-substrates.
We first examined the feasibility of an aza-HDDA reaction with the nitrile-diyne 10a [from a four linear-step sequence; see Supporting Information (SI)]. This substrate contains a pendant TBS-ether, a moiety known to efficiently trap HDDA benzynes.12 Heating nitrile 10a at 225 °C [in o-dichlorobenzene (DCB)] for 16 hours resulted in its nearly complete consumption. The tricyclic pyridine derivative 11a was isolated (36%) along with its desilylated analog 11a-H (10%). Even though modest yielding, this transformation clearly established the viability of an aza-HDDA process, at least for a class 1 variant (nitrile as diynophile).
We then scouted a number of related substrates, 10b-f (Figure 2), each bearing the tethered OTBS trap but differing in the nature of the nitrile-to-diyne linker. Several of these substrates contain geminal dimethyl substituents, which likely facilitates the cycloaromatization step through the Thorpe–Ingold effect,13 although this point was not explicitly explored. Several benefit from the restricted rotation imposed by the alkene or arene within the tether, although the successful cyclization of 10a shows that this constraint is not an absolute requirement. Each of pyridines 11b-f was the predominant product in each crude product mixture. Based upon evaluation of a combination of the cleanliness of this mixture (1H NMR analysis), the isolated yield of products 11a-f,14 the substrate stability (an issue with 10d), and the reaction rate, we elected to use analogs of 10e and 10f to study a variety intermolecular trapping reactions. In particular, for this purpose we synthesized substrates 12 and 13 (Figure 3), each bearing a simple methyl substituent in place of the siloxypropyl group at the diyne terminus.
Figure 2.
Class 1 aza-HDDA nitrile diyne substrates preliminarily explored. Reaction temperatures reflect the relative reactivities
Figure 3.
Reactions of the class 1 substrates 12 and 13 (methyl-bearing analogs of 10e and 10f, respectively) involving trapping of pyridynes 12* and 13*to give products 14a-d and 15a-i, respectively.
aThe minor isomer was not isolated; this ratio reflects integration of an HPLC/MS chromatogram that verifies the mass of the minor component.
Nitriles 12 and 13 gave rise to the pyridynes 12* and 13* in o-DCB at 175 °C. For comparison, the close structural analogs of 12 in which the CN is replaced by an alkyl group (cf. ia/b to iia/b15) cyclize to their respective benzyne analogs via a HDDA reaction with a half-life of ca. 4 hours at 85 °C. Several different bimolecular trapping reagents were used to capture the aryne 12*, giving rise to products 14a-d (Figure 3). The electrophilicity of the acyl nitrile in 12 imposed a limitation on the types of nucleophilic traps that could be used as trapping agents; the substrate needs, of course, to be compatible with the trapping agents under the thermal conditions required to promote the aza-HDDA cycloisomerization event. Furan and cyclooctane, a 4π-diene and a dihydrogen donor molecule,16 respectively, meet that requirement and gave rise to products 14a and 14b, respectively. Acetic acid was also a viable trapping agent, leading to adduct 14c. Now, and in contrast to furan and cyclooctane, the trapping event can lead to two different isomeric acetate products. The ester 14c was produced as the major adduct along with a minor amount of the adduct arising from trapping at C4 (not shown17). The three-component adduct 14d18 was produced when tetrahydrothiophene (THT) and acetic acid were both present during pyridyne generation. This demonstrates the greater proclivity of a softer, more polarizable nucleophile to engage the electrophilic pyridyne, as has been observed19 for other three-component reactions involving benzynes.
Under identical reaction conditions, the analogous pyridine products 15a-15d were formed from substrate 13 using the same pyridyne-trapping reagents as for 12. Additional traps yielded the pyridine products 15e-15i: The reaction of pyridine 13* with tetraphenylcyclopentadienone (TPCPD) in a [4+2] addition, followed by the thermal cheletropic extrusion of carbon monoxide, yielded the isoquinoline 15e. The absence of a highly electrophilic acyl nitrile moiety in substrate 13 further allowed for the use of nucleophilic pyridyne traps such as n-butylamine and 2,4,6-trimethylphenol to give 15f and 15g, respectively. Finally, the pericyclic reactions of 13* with trimethylsilyl azide (in a 1,3-dipolar cycloaddition) and p-xylene (in a [4+2] cycloaddition) gave the respective pyridine products 15h and 15i.
The sense of regioselectivity of nucleophilic addition to unsymmetrical arynes often correlates with the extent (and direction) of geometric distortion, as computed for the aryne structure.4d,20 In the case of 12* and 13* (Figure 3), DFT calculations show only a slight degree of distortion in these 3,4-pyridynes, as indicated by the denoted internal bond angles. Accordingly, mixtures of regioisomers were observed for those trapping reactions capable of leading to constitutionally isomeric adducts. However, the product ratios vary considerably, suggesting that steric differences for the approach of the trapping agent also impact the regioselectivities.21
In contrast, 2,3-pyridynes are recognized as being much more distorted and, accordingly, more discriminating in their site-selectivity for nucleophilic addition.4c,e The computed structures for 16* and 18* (Figure 4) are well in line with this expectation. This further incentivized our exploration of class 2 aza-HDDA reactions [conjugated cyanoalkyne as the 4π-component (cf. 3, Figure 1)]. We first examined substrate 16 (preparation in SI). The lack on an open valency on the nitrogen terminus of the 4π-unit precluded the use of a tethered OTBS trapping group analogous to those used to explore the class 1 substrates (Figure 2).
Figure 4.
(a) Reactions of the class 2 substrate 16 to give products 17a-f. (b) Reactions of the class 2 substrate 18 to give products 19a-g.
When heated to, now, just 120 °C for five hours in a solution containing furan, the ynone 16 was smoothly transformed into the furan adduct 17a in excellent yield (81%). The half-life for disappearance of 16 to give the pyridyne 16* was ca. 25 min.
We proceeded to test a number of other trapping reactions known to be effective for HDDA-benzynes. These gave rise to products 17b-f. In no instance was a second isomer isolated nor even definitively identified as a minor constituent in the crude product mixture, and in most cases its presence in as little as 1% would have been detectable by HPLC/MS. This high level of selectivity is consistent with the highly distorted nature of the computed structure of the 2,3-pyridyne 16*. The assignment of structure to the products rests, on i) NOE experiments for adducts 17b-f and ii) NMR chemical shift similarities (both 1H and 13C) throughout the series of six compounds. Capture by protic nucleophiles, exemplified by products 17b and 17c, are noteworthy, given the potentially electrophilic ynone and cyanoalkyne moities present in substrate 16. However, we surmise that the low yield of 17c is a reflection of competitive consumption of the substrate prior to its cyclization. The three-component adduct18,19 17d arises from trapping of the pyridyne by, first, the sulfur atom in THT followed by the conjugate base of methyl cyanoacetate (MCA). Formation of products 17e and 17f demonstrates that pyridyne 16* is capable of providing complex structures upon engaging natural products.22 The tropinone and colchicine adducts, respectively, can be viewed as arising via the species indicated in brackets in the second row of Figure 4a.
A complementary set of experiments was performed with the class 2 substrate 18, in which the carbonyl oxygen in 16 has been replaced by a gem-dimethyl moiety. This compound cyclized considerably more slowly than did the ynone 16 (comparable t1/2 values at 170 vs. 120 °C, respectively). We have previously observed this type of rate difference in triyne-to-benzyne transformations,23 but attribute it not to an electronic effect but, instead, to a difference in the distance between the two closest sp-hybridized carbons attainable in the reactive conformer of the substrate.
Cyclization of 18 in the presence of furan led to 19a in a more modest yield than for the case of 17a—a reflection of that fact that at higher reaction temperatures adducts like 19a undergo further [4+2] cycloaddition with an additional molecule of furan.24 Products 19b-f demonstrate reactivity analogous to that giving 17c-f. Finally, trapping 18* with 2,4,6-trimethylphenol led to formation of 19g in high yield, a process we have described as a phenolic ene reaction.25
In conclusion, we have demonstrated that two different types of nitrile analogs of HDDA triyne substrates can be thermally cyclized to produce either 3,4- or 2,3-pyridynes. These reactive intermediates are captured in situ by a variety of different trapping reagents. The 3,4-pyridynes (from what we call class 1 aza-HDDA reactions) show (by DFT) only a minimal amount of distortion and often give rise to two isomeric products wherein the nucleophilic portion of the trapping agent has competitively attacked the C3- vs. the C4-pyridyne carbons. In contrast, 2,3-pyridynes (from class 2 aza-HDDA reactions) are considerably more distorted and, accordingly, lead to the isolation of only a single regioisomeric product. Reflecting the inherently higher bond enthalpy of a C≡N vs. a C≡C bond, the aza-HDDA reaction proceeds more slowly (i.e., with a higher activation barrier) than HDDA reactions of analogous triyne substrates. Several of the products arise from reactions in which the aryne has been captured by a process that is, to our knowledge, unprecedented for pyridyne; these include reduction by dihydrogen transfer (14b/15b), carboxylic acid addition (14c/15c), three-component trapping initiated by sulfide (14d/15d/17d/19c/19d), phenol ene reaction (15g/19g/19h), and capture by a tertiary amine (17e/19e). Overall, the aza-HDDA reaction represents a new way to assemble substituted pyridine compounds and do so in a fashion that is complementary to more classical approaches for construction of this long-revered heterocycle.
Supplementary Material
ACKNOWLEDGMENT
Support for this work was provided by the Institute of General Medical Sciences of the U.S. Department of Health and Human Services (R35 GM127097). A portion of the NMR data were obtained with an instrument purchased with funds from the NIH Shared Instrumentation Grant program (S10OD011952). Computations were performed with resources made available by the University of Minnesota Supercomputing Institute (MSI).
Footnotes
Supporting Information
The Supporting Information is available free of charge on the ACS Publications website.
Experimental procedures for all reactions; spectroscopic characterization data for all new compounds; details of computational methods; copies of 1H and 13C NMR spectra.
The authors declare no competing financial interest.
REFERENCES
- (1).(a) Bradley AZ; Johnson RP Thermolysis of 1,3,8-nonatriyne: Evidence for intramolecular [2 + 4] cycloaromatization to a benzyne intermediate. J. Am. Chem. Soc 1997, 119, 9917–9918. [Google Scholar]; (b) Miyawaki K; Suzuki R; Kawano T; Ueda I Cycloaromatization of a non-conjugated polyenyne system. Tetrahedron Lett 1997, 38, 3943–3946. [Google Scholar]
- (2).Diamond OJ; Marder TB Methodology and applications of the hexadehydro-Diels–Alder (HDDA) reaction. Org. Chem. Front 2017, 4, 891–910. [Google Scholar]
- (3).Hoye TR; Baire B; Niu D; Willoughby PH; Woods BP The hexadehydro-Diels–Alder reaction. Nature 2012, 490, 208–212. [DOI] [PMC free article] [PubMed] [Google Scholar]
- (4).(a) Levine R; Leake WW Rearrangement in the reaction of 3-bromopyridine with sodium amide and sodioacetophenone. Science 1955, 121, 780–780. [DOI] [PubMed] [Google Scholar]; (b) Goetz AE; Shah TK; Garg NK Pyridines and indolynes as building blocks for functionalized heterocycles and natural products. Chem. Commun 2015, 51, 34–45 (and refs therein). [DOI] [PubMed] [Google Scholar]; (c) Saito N; Nakamura K; Sato Y 1,3-Dipolar cycloaddition of pyridynes and azides: concise synthesis of triazolopyridines. Heterocycles 2014, 88, 929–937. [Google Scholar]; (d) Ikawa T; Urata H; Fukumoto Y; Sumii Y; Nishiyama T; Akai S Concise synthesis of multisubstituted isoquinolines from pyridines by regioselective Diels–Alder reactions of 2-silyl-3,4-pyridynes. Chem. Eur. J 2014, 20, 16228–16232. [DOI] [PubMed] [Google Scholar]; (e) Medina JM; Jackl MK; Susick RB; Garg NK Synthetic studies pertaining to the 2,3-pyridyne and 4,5-pyrimidyne. Tetrahedron 2016, 72, 3629–3634. [Google Scholar]
- (5).For example, the computed ΔH° for addition of H2 to ethyne (to ethene) vs. to hydrogen cyanide (to methanimine) is −47.1 vs. −11.7 kcal•mol-1.; Lan Y; Danheiser RL; Houk KN Why Nature eschews the concerted [2 + 2 + 2] cycloaddition of a nonconjugated cyanodiyne. Computational study of a pyridine synthesis involving an ene–Diels–Alder–bimolecular hydrogen-transfer mechanism. J. Org. Chem 2012, 77, 1533–1538. [DOI] [PMC free article] [PubMed] [Google Scholar]
- (6).Huisgen R 1,3-Dipolar cycloadditions. Past and future. Angew. Chem. Int. Ed 1963, 2, 565–598. [Google Scholar]; (b) Himo F; Demko ZP; Noodleman L; Sharpless KB Mechanisms of tetrazole formation by addition of azide to nitriles. J. Am. Chem. Soc 2002, 124, 12210–12216. [DOI] [PubMed] [Google Scholar]
- (7).Varela JA; Saá C Construction of pyridine rings by metal-mediated [2 + 2 + 2] cycloaddition. Chem. Rev 2003, 103, 3787–3802. [DOI] [PubMed] [Google Scholar]
- (8).van Leusen AM; Jagt JC Cycloaddition reactions of sulfonyl cyanides. Tetrahedron Lett 1970, 11, 971–973. [Google Scholar]
- (9).Boger DL; Weinreb SM Hetero Diels-Alder Methodology in Organic Synthesis; Academic Press: San Diego, 1987; pp 146–150. [Google Scholar]
- (10).(a) You X; Xie X; Chen H; Li Y; Liu Y Cyano-Schmittel cyclization through base-induced propargyl-allenyl isomerization: Highly modular synthesis of pyridine-fused aromatic derivatives. Chem. Eur. J 2015, 21, 18699–18705. [DOI] [PubMed] [Google Scholar]; (b) Sakai T; Danheiser RL Cyano Diels–Alder and cyano ene reactions. Applications in a formal [2 + 2 + 2] cycloaddition strategy for the synthesis of pyridines. J. Am. Chem. Soc 2010, 132, 13203–13205. [DOI] [PMC free article] [PubMed] [Google Scholar]
- (11).Wang T; Naredla RR; Thompson SK; Hoye TR The pentadehydro-Diels–Alder reaction. Nature 2016, 532, 484–488. [DOI] [PMC free article] [PubMed] [Google Scholar]
- (12).Hoye TR; Baire B; Wang T Tactics for probing aryne reactivity: Mechanistic studies of silicon–oxygen bond cleavage during the trapping of (HDDA-generated) benzynes by silyl ethers. Chem. Sci 2014, 5, 545–550. [DOI] [PMC free article] [PubMed] [Google Scholar]
- (13).(a) Beesley RM; Ingold CK; Thorpe JF CXIX.—The formation and stability of spiro-compounds. Part I. spiro-Compounds from cyclohexane, J. Chem. Soc. Trans 1915, 107, 1080–1106. [Google Scholar]; (b) Jung ME; Piizi G gem-Disubstituent effect: Theoretical basis and synthetic applications. Chem. Rev 2005, 105, 1735–1766. [DOI] [PubMed] [Google Scholar]
- (14).Although the isolated yield of product 11f was low (27% in o-DCB, see SI), when the reaction was performed in the presence of furan (6 equiv), an excellent external trapping agent for arynes, the furan adduct (cf. 15a) was isolated in 52% along with 11f (13%) (see SI). The overall yield of pyridyne-derived adducts encouraged us to pursue this type of substrate further.
-
(15).Rates of HDDA cyclization of, for example, ia24 and ib3 for comparison with that of 12 (Figure 3).
- (16).Niu D; Willoughby PH; Baire B; Woods BP; Hoye TR Alkane desaturation by concerted double hydrogen atom transfer to benzyne. Nature 2013, 501, 531–534. [DOI] [PMC free article] [PubMed] [Google Scholar]
- (17).Throughout the manuscript only the major product is shown along with the ratio of major to minor adducts in instances where constitutional isomers are formed. The characterization data for both are provided in the Supporting Information (SI).The structure assignment was made on the basis of both NOE experiments as well as the significant chemical shift differences between H3 and H4 in the 1H NMR spectrum each of pyridine product.
- (18).Chen J; Palani V; Hoye TR Reactions of HDDA-derived benzynes with sulfides: Mechanism, modes, and three-component reactions. J. Am. Chem. Soc 2016, 138, 4318–4321. [DOI] [PMC free article] [PubMed] [Google Scholar]
- (19).Bhojgude SS; Biju AT Arynes in transition-metal-free multicomponent coupling reactions. Angew. Chem. Int. Ed 2012, 51, 1520–1522. [DOI] [PubMed] [Google Scholar]
- (20).(a) Garr AN; Luo D; Brown N; Cramer CJ; Buszek KR; VanderVelde D Experimental and theoretical investigations into the unusual regioselectivity of 4,5-, 5,6-, and 6,7-indole aryne cycloadditions. Org. Lett 2010, 12, 96–99. [DOI] [PMC free article] [PubMed] [Google Scholar]; (b) Cheong PHY; Paton RS; Bronner SM; Im G-YJ; Garg NK; Houk KN Indolyne and aryne distortions and nucleophilic regioselectivities. J. Am. Chem. Soc 2010, 132, 1267–1269. [DOI] [PMC free article] [PubMed] [Google Scholar]; (c) For distortion analysis of isomeric pyridynes, see Goetz AE; Bronner SM; Cisneros JD; Melamed JM; Paton RS; Houk KN; Garg NK An efficient computational model to predict the synthetic utility of heterocyclic arynes. Angew. Chem. Int. Ed 2012, 51, 2758–2762. [DOI] [PMC free article] [PubMed] [Google Scholar]
- (21).Medina JM; Mackey JL; Garg NK; Houk KN The role of aryne distortions, steric effects, and charges in regioselectivities of aryne reactions. J. Am. Chem. Soc 2014, 136, 15798–15805. [DOI] [PMC free article] [PubMed] [Google Scholar]
- (22).Ross SP; Hoye TR Reactions of hexadehydro-Diels–Alder benzynes with structurally complex multifunctional natural products. Nature Chem 2017, 9, 523–530. [DOI] [PMC free article] [PubMed] [Google Scholar]
- (23).Woods BP; Baire B; Hoye TR Rates of hexadehydro-Diels–Alder (HDDA) cyclizations: Impact of the linker structure. Org. Lett 2014, 16, 4578–4581. [DOI] [PMC free article] [PubMed] [Google Scholar]
- (24).Lin CT; Chou TC Synthesis of 2,3-dibromoanthracene. Synthesis 1988, 8, 628–630. [Google Scholar]; (b) Evidence for such side reactions of 19a was clearly seen in the 1H NMR spectrum of the crude product mixture from which the presence of ca. 30% of such 2:1 adducts was estimated.
- (25).Zhang J; Niu D; Brinker VA; Hoye TR The phenol-ene reaction: Biaryl synthesis via trapping reactions between HDDA-generated benzynes and phenolics. Org. Lett 2016, 18, 5596–5599. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.




