Abstract
It is known that there has been positive natural selection for hemoglobin S and C in humans despite negative health effects, due to its role in malaria resistance. However, it is not well understood, if there has been natural selection for hemoglobin E (HbE), which is a common variant in Southeast Asia. Therefore, we reviewed previous studies and discussed the potential role of natural selection in the prevalence of HbE. Our review shows that in vitro studies, evolutionary genetics studies and epidemiologic studies largely support an involvement of natural selection in the evolution of HbE and a protective role of HbE against malaria infection. However, the evidence is inconsistent, provided from different regions, and insufficient to perform an aggregated analysis such as a meta-analysis. In addition, few candidate gene, genome-wide association or epistasis studies, which have been made possible with the use of big data in the post-genomic era, have investigated HbE. The biological pathways linking HbE and malaria infection have not yet been fully elucidated. Therefore, further research is necessary before it can be concluded that there was positive natural selection for HbE due to protection against malaria.
Lay summary: Our review shows that evidence largely supports an involvement of natural selection in the evolution of HbE and a protective role of HbE against malaria. However, the evidence is not consistent. Further research is necessary before it is concluded.
Keywords: hemoglobin E, malaria, natural selection, malaria hypothesis
INTRODUCTION
Malaria and hemoglobin
The evolutionary connection between malaria and hemoglobin (Hb) variants was proposed in the 1940s by J.B.S. Haldane [1] and is called the ‘malaria hypothesis’ [2]. It posits that certain polymorphisms in the human genome have been selected to confer resistance against malaria [3]. After the hypothesis was proposed, a large body of epidemiology and biology studies reported an association of hemoglobin variants with malaria infection [3–6]. Moreover, genetic approaches such as haplotypic methods have been utilized to examine the hypothesis [6–8].
In 2016, 216 million people were estimated to be infected with malaria, and 445 000 people were estimated to have died from malaria in the world [9]. Southeast Asia and Africa are the most common regions for malarial infection [9]. Malaria is a life-threatening disease caused by protozoan parasites of the genus Plasmodium, which spread through infected anopheline mosquito [10]. There are several malarial parasite species that infect humans: Plasmodium falciparum, Plasmodium vivax, Plasmodium malariae, Plasmodium ovale and Plasmodium knowlesi [10–13]. In Southeast Asia, P. falciparum is the most dominant species (66%) followed by P. vivax (34%) [9]. In Africa, P. falciparum is responsible for almost all malaria cases (99.7%), whereas P. vivax is rare (0.3%) [9]. Symptoms of the most severe malaria infection (typically caused by P. falciparum) include coma, metabolic acidosis, anemia, hypoglycemia, acute renal failure and acute pulmonary edema [10]. If a severe case of malaria is left untreated, it is likely to become fatal [10]. It has been a challenge to prevent malaria infection because the parasites can avoid immune detection by expressing a different gene variant on the erythrocyte surface after the human immune system has adapted to former variants [14].
Human hemoglobin is formed by two alpha-globin and two beta-globin chains which are encoded by two α-globin genes (HBA1 and HBA2) and one β-globin gene (HBB) [15]. Hemoglobin disorders are genetic diseases affecting hemoglobin, caused by mutations and/or deletions in the α-globin or β-globin genes, and are divided into two general categories: thalassemia syndromes and structural hemoglobin variants [16]. Quantitative defects in the synthesis of α-globin or β-globin subunits, which can happen as total absences or reductions, are called thalassemia syndromes. On the other hand, qualitative disorders of globin structure are called structural hemoglobin variants [17]. These are different compared with HbA, which is the most common adult human hemoglobin [18]. Some structural variants such as hemoglobin S (HbS) and hemoglobin C (HbC) have a tendency to aggregate with sickle cell formation (the sickle cell syndromes) [19], while some other structural variants such as hemoglobin E (HbE) do not [16].
Humans have evolved several polymorphisms in human genomes and some, like glucose-6-phosphate dehydrogenase (G6PD) deficiency, are under selection by malaria to protect against malaria infection [20]. Another example is HBB gene variants, which exhibit balanced polymorphism, where a disadvantage of a homozygous status is offset by a heterozygous advantage against malaria [21]. Erythrocytes with such polymorphisms, including hemoglobin S and C, confer the ability to protect against malaria infection by several identified ways including the impairment of parasite growth [22–27] (see below for details).
HbS results from the switch of a glutamic acid to valine at the sixth codon of gene encoding β-globin [28]. HbC results from an alteration of a glutamic acid to lysine [15]. Multiple studies on the roles of HbS (dominant in sub-Saharan Africa and the Middle East) and HbC variants (in West Africa) in protecting against malaria have been conducted. First, impairment in parasite growth by HbS [27] and HbC erythrocytes has been observed [22, 23]. Second, HbS and HbC may slow the trafficking of parasite proteins across the parasitophorous vacuole [29]. Third, HbC and HbS carriers have been found to produce increased levels of immunoglobulin-G directed against several plasmodial antigens [30, 31]. Fourth, the microRNA of HbAS and HbSS red blood cells (RBCs) play a protective role against malaria [32]. Fifth, one study suggests an interaction between HbC and genes regarding the activation of natural killer (NK) cells [33], which plays an important role in combatting human malaria [34]. Moreover, several epidemiologic studies also suggest that HbS and HbC play a role in malaria resistance [35–38]. Lastly, a genetic association study has confirmed the association with resistance to malaria and both HbS and HbC [39]. The current consensus is that these two variants, particularly HbS, support the malaria hypothesis and were favored by natural selection [3].
Hemoglobin E
HbE is a variant caused by a single point mutation at codon 26 of the β-globin gene [40], which is located on chromosome 11p15.5 [8]. This point mutation leads to the replacement of glutamic acid (Glu: GAG) with lysine (Lys: AAG) [41], resulting in abnormal messenger RNA processing [42] and irregular erythrocytes [41]. The gene expression of the HbE mutation leads to the improved efficiency of normally inactive donor sites for RNA splicing at the codon of the β-globin site [42]. The mutation makes it resemble the consensus splice sequence ‘AAGGTGAGT’, often referred to as ‘cryptic’ [42, 43] due to it being non-detectable in wild-type pre-mRNA [44]. Therefore, the cryptic splice site becomes activated and leads to the reduced production of normally spliced mRNA as a result of aberrant splicing [45]. A relative reduction in β-globin results in the accumulation of excess α-globin chains, leading to a minor globin-chain imbalance [46]. Individuals homozygous for the HbE allele (HbEE or ‘hemoglobin E disease’) have microcytic hypochromic anemia, and heterozygotes (HbAE or ‘hemoglobin E trait’) have mild anemia [16]. People possessing an HbE variant may also develop secondary disorders like jaundice, hepatosplenomegaly and growth retardation in their developmental stages, which leads to the diagnosis of HbE [41]. The clinical severity for these patients strongly depends on whether or not they also have thalassemia [41]. For example, HbE/β-thalassemia is the most dominant combination in Asia and is also responsible for 50% of all severe β-thalassemia cases globally [41, 47]. HbE cases are most commonly found in Southeast Asia [48], and the prevalence reaches 50% in some groups in Thailand [49].
Analysis of Southeast Asian populations suggests that the HbE mutation in Thailand originated between 1240 and 4440 years ago [8]. One paper suggests that there are at least five haplotypes of the HbE mutation (three in Southeast Asia and two in Europe) [50], with other papers, including a recent study, suggesting that there are multiple independent origins in Southeast Asia [49, 51, 52]. A study confirmed that an HbE variant found in Yunnan, China shares the same origin as one found in Thailand, and also indicated that consanguineous marriage might explain the variation in the frequency of HbE [53]. Current evidence supports the rise and evolution of the HbE mutation in different locations throughout Asia [51]. There is a mechanism that explains how the HbE mutation may appear on more than one haplotype in a given population: meiotic recombination [51, 52]. For example, Jomoui et al. [52] suggested that two of the most common haplotypes of the βE-globin gene found in the Southeast Asian population could have resulted via recombination between restriction sites. In addition, other papers reported the existence of a recombination hotspot in the β-globin gene cluster [54–58].
STUDIES ON THE ASSOCIATION BETWEEN HbE AND MALARIA
Unlike HbS, HbC and other protective polymorphisms like G6PD deficiency, the positive natural selection of HbE due to benefits offered against malaria is controversial. Therefore, we performed a literature review of HbE studies to summarize and evaluate the current evidence. We introduce three different series of studies investigating HbE and malaria: biological mechanisms of HbE, evolutionary genetics studies including a linkage disequilibrium (LD) analysis and epidemiologic studies including a genetic association study.
Protective biological mechanisms
We have identified four major potential mechanisms explaining how HbE can protect against malaria.
First, reduced probability of parasite merozoite invasion into the RBCs can provide resistance to malaria [21]. In other words, abrogation of a specific parasite–erythrocyte binding interaction is important, and factors such as bending and stability might be major factors in the inhibition of parasite invasion whereas membrane deformability is only weakly related [59]. There are in vitro studies that investigate the connection between HbE and malaria resistance. Chotivanich et al. performed a mixed erythrocyte invasion assay and calculated the susceptibility ratio (SR), which is denoted as (stained infected RBCs/stained RBCs)/(unstained infected RBCs/unstained RBCs). Median SR of HbAA = 0.88 (range = 0.53–1.4) > Median HbEE = 0.69 (range = 0.13–0.98) > Median HbAE = 0.34 (range = 0.05–0.64) [21]. This finding suggests a protective role of HbE and was supported by other in vitro studies [24, 60]. On the other hand, another study compared seven HbAE patients with seven HbAA patients and found that the level of infected RBCs was not associated with the status of HbE carriers after a 96-hr incubation of RBCs and P. falciparum [61]. However, this sample size was much smaller than previous studies [21] such as the aforementioned study by Chotivanich et al. which had samples of HbAA (n = 34), HbAE (n = 20) and HbEE (n = 22). There are two important considerations for interpreting in vitro studies such as a mixed erythrocyte invasion assay. First, if the malaria strains used for the in vitro studies are different from those prevalent in the Southeast Asian region for the past thousands of years, they can easily produce false negative results. Second, the results of in vitro studies do not directly represent what occurs in vivo.
Second, after the entry of malaria into an erythrocyte, remodeling the host cell structure and the growth of the parasite are important for the next steps of replication and egress [62]. Therefore, one of the mechanisms of malarial resistance is the inhibition of this process [21]. Studies reported that the growth of malaria parasites is inhibited in HbE cells. The severity of acute P. falciparum was ameliorated in the presence of HbE [63], and other studies reported a decrease in growth of the parasite in HbE erythrocytes [24–26]. In addition, a recent study reported significantly lower P. vivax asexual parasite densities in HbAE heterozygotes compared with HbAA P. vivax patients (P < 0.05) [64]. However, other studies suggested that HbE does not have an inhibitory role in parasite growth [65–67].
Third, an alteration in the morphology of erythrocytes in response to parasite infection plays an important role in the removal of infected cells [68]. Erythrocytes infected with Plasmodium parasites showed decreased deformability [69–71], resulting in increased retention in the spleen [69, 72], which is responsible for the removal of abnormal erythrocytes [68]. One notable morphological characteristic in HbE cells is a slight microcytosis [73].
Fourth, infected HbE cells are more susceptible to phagocytosis by monocytes [60]. The surface alterations of P. falciparum-infected erythrocytes such as excrescences, knobs [74], new antigenic determinants [75], modification of membrane lipids [76], membrane fluidity [77] and binding to endothelial and amelanotic melanoma cells [78] were suggested by various experiments [60]. One recent study found that HbE/β-thalassemia RBCs triggered the phagocytic function of monocytes and that HbE/β-thalassemia monocytes have increased RBC clearance compared to normal monocytes, which was controlled by the upregulation of microRNA-155 [79].
Lastly, there are several other suggested protective mechanisms. For example, HbE is associated with high antimalarial antibody titers [24, 80]. In addition, redox status and function in variant cells are a determinant of infectability [81]; that is, HbE erythrocytes possess impaired antioxidant defenses [82, 83] creating an undesirable environment for oxidation-sensitive malaria parasites [84]. Finally, the improved clearance rate of the parasite by artemisinin derivatives in individuals with HbAE has been documented [85].
In sum, we have identified and summarized various biological mechanisms of HbE. However, a list of the potential mechanisms is not sufficient to discuss the involvement of natural selection in the evolution of HbE. It has not been fully examined which mechanism can make a difference in human survival and reproduction or which mechanism makes HbE advantageous in an environment.
Evolutionary genetics studies
LD is a non-random association of certain alleles that are coinherited with a higher probability than predicted by random chance within a population, and this can be due to selection or founder effects [86, 87]. The reduction or elimination of variation near a mutation in DNA is called a selective sweep, inducing a high prevalence of certain alleles in the genomic region near the causal variant. These associated alleles define a haplotype and remain in the population until recombination separates them [86]. As LD declines due to recombination, the length of the LD segment can be used to estimate when an advantageous mutation appeared [87]. LD studies are very important to infer and analyze evolutionary history and disease inheritance [87].
Ohashi et al. [8] performed an LD analysis to calculate a pairwise |D’| in 48 Thai patients with mild P. falciparum malaria. All subjects were recruited from the Suan Phueng District in the Ratchaburi Province (a single hospital), which is 200 km west of the Bangkok metropolitan area and near the border with Myanmar. Additionally, they performed a statistical test for detecting reduced haplotype diversity and ran forward in time computer simulations under a variety of selection models [8]. The study suggests that the HbE mutation occurred between 1240 and 4440 years ago under positive selection and that the allele frequency increased rapidly [8]. The study provides the strongest evidence of natural selection for HbE. In fact, we did not find any counter evidence to this claim in all 81 studies citing the study. However, to our present knowledge, no other studies have attempted to replicate the Ohashi et al.’ study with other populations.
As stated in the prior section, different human populations could have developed the same or similar hemoglobin mutations despite different origins: there are five haplotypes of HbE with three Southeast Asian and two European origins [50], and at least two independent origins in Southeast Asia [51, 52]. The independent origins of HbE mutations and simultaneous increase in the frequency of HbE in various populations increase the likelihood of positive natural selection, although genetic drift cannot be ruled out by this fact alone. Compared with HbS, HbE has few origins and haplotypes due to its rapid and recent rise [8].
In sum, the evolutionary genetics studies such as an LD analysis have potential to provide strong evidence supporting natural selection for HbE. Although the Ohashi et al.’s study using the Thai population used a robust study design and provided clear evidence, a single study using a single population is not sufficient to draw a conclusion. A larger number of evolutionary genetics studies using various relevant populations from the malaria-affected regions must be conducted to confirm the findings of the Ohashi et al.’s study.
Epidemiologic studies
Taylor et al. [88] showed using the data of two case-control studies [63, 89] that there was no association of HbE status with the ‘severity’ of the P. falciparum infection. This analysis needs to be carefully interpreted as one case study showed a strong protective effect, while the other showed a null effect. There is a large heterogeneity within the small-scale meta-analysis [88]. Given these mixed results with other outside studies [90, 91], the role of the HbE variant in malaria severity has still been controversial.
Studies examining an association of HbE status with the presence of P. falciparum infection (comparing malaria cases with non-malaria cases) can be more relevant. Kar et al. [92] reported a significantly reduced prevalence of P. falciparum parasitemia in HbAE/EE (4.3%) compared with AA (12.2%) (N = 708, northeast India) (P < 0.001). Their results are also partially supported by a recent study, Shannon et al. (N = 202, Bangladesh) [93] which showed that HbEE (OR 5.0 [1.07–46.93]), not HbAE (OR 0.71 [0.42–1.19]), was associated with increased passive case detection of P. falciparum. One recent study reported that groups with HbAE (P = 0.006) and HbEE (P = 0.004) had significantly lower odds of presenting with acute P. vivax infections using the HbAA group as the reference (N = 247, China–Myanmar border) [64]. Additionally, one study observed high prevalence of HbE in highly malarious regions compared to the regions with a low incidence of malaria [94]. Recently, one study reported high prevalence of co-inheritance of HbAE and G6PD deficiency [95], which is another variant that provides protection against malaria and has gone through positive selection [96]. In addition, Deng et al. pointed out that the time frame of HbE origination (between 1240 and 4440 years ago) [8] coincides with the origination of the most common G6PD variant in Southeast Asia, which had been affected by positive selection over the past 1500 years [97].
Genetic association studies, including genome-wide association studies (GWAS), are another significant way to explain host genetics and parasite interactions and genetic correlations with common diseases [98, 99]. Several genetic association analysis have been conducted [98–100] but there is a lack of data from populations, where HbE is common [39]. A study investigated the single nucleotide polymorphism (SNP) responsible for HbE, rs33950507, in S’tieng ethnic group in Vietnam and stated that the sample was too small to estimate association with severe malaria [39]. Other studies showed that some SNPs affect the severity of HbE/β0-thalassemia [101, 102].
Epistatic interactions, where the presence of one gene influences the phenotypic expression of another gene [103], are expected to take place between hemoglobin genes. Positive epistasis between the α- and β-thalassemia genes leading to malaria protection has been reported [104]. Elimination of protection against severe malaria by co-inheritance of HbS and α-thalassemia, negative epistasis, has also been reported and might provide an explanation for the low prevalence of α-thalassemia variants in Africa [105]. One epidemiological study suggested negative epistasis between HbF and HbS on malaria [103]. We found no studies focusing directly on epistasis between HbE and other hemoglobin disorders. One study aimed to test gene–gene interaction signals of association at pairs of SNPs that showed strong evidence of association with severe malaria [39]. However, this study was conducted without the inclusion of Thai, Cambodian, Laotian populations which have the highest HbE prevalence. In addition, it only investigated the influence of P. falciparum, whereas Southeast Asian populations also suffer from P. vivax. Future studies should investigate the influence of P. vivax and include more data from Southeast Asian populations.
In sum, epidemiologic studies have repeatedly shown a positive association of HbEE or HbAE with reduced malaria cases. However, the evidence is inconsistent and reported from different countries and regions. Available data is not sufficient to perform an aggregated analysis such as a standard meta-analysis and a meta-regression. Furthermore, there are variations in the study designs and the reported outcomes of the above-mentioned studies. Genetic association studies including a SNP for HbE have not been often implemented.
CONCLUSIONS AND FUTURE PERSPECTIVES
Based on the literature review, we conclude that HbE seems to be a good candidate for fulfilling the malaria hypothesis [3, 48, 49, 106] (summarized in Table 1). Most current evidence does not reject the potential role of natural selection in the evolution of HbE, in which the selection pressure is malaria. Multiple epidemiologic studies that have shown a positive association of HbE with reduced malaria cases and conducted an LD analysis provide the strongest evidence to support natural selection for HbE. None of the studies strongly suggested an involvement of genetic drift or other evolutionary mechanisms. If positive natural selection acts to increase the allele frequency of HbE, we would see evidence for this in different types of studies. For example, LD analysis studies and other genetic studies would repeatedly detect positive selection such as a selective sweep, and epidemiologic studies would repeatedly find a reduced frequency of malaria cases among people having HbE. What we found in the literature review here is not like this. Rather, we found that the populations relevant to HbE have been understudied and this may lead to the lack of strong evidence for the potential association of HbE and malaria.
Table 1.
Year | Ref no. | Results | R b |
---|---|---|---|
1961 | [106] | Suggested that the high prevalence of HbE in Southeast Asia is due to conferred resistance against malaria | + |
1964 | [94] | Higher prevalence of HbE in the highly malarious regions, compared with the regions with a low incidence of malaria were observed | + |
1967 | [48] | Suggested that HbE heterozygote gives protection against malaria | + |
1969 | [67] | HbE and thalassemia traits did not confer advantages for P. falciparum infection regarding infection rate and parasite densities | − |
1981 | [26] | HbEE showed slowed multiplication of P. falciparum, while the parasite grows normally in HbEA | + |
1981 | [65] | No differences between HbAA, HbEA and HbEE toward parasite growth were reported | − |
1986 | [60] | Susceptibility of P. falciparum-infected HbE erythrocytes to phagocytosis by monocytes is increased. | + |
1986 | [24] | Compared with HbAA, parasite growth diminished as the concentration of HbE increased, and it showed higher titer value of antimalarial antibody | + |
1987 | [82] | HbE RBCs possess impaired antioxidant defense and this impairment would limit the development of the malaria parasite. | + |
1987 | [25] | Decreases in the growth of P. falciparum in HbE/β-thalassemia patients were observed | + |
1992 | [92] | Malaria is an important ecologic factor for maintaining the high frequency of HbE | + |
1992 | [59] | Cell deformabilities of HbE/β-thalassemia and HbEE erythrocytes have little influence on parasitic invasion, but other various factors may play an important role on inhibition of parasite invasion | + |
1995 | [89] | There were no significant differences between mean parasitemia levels in HbAA, HbEE and HbEA | − |
1999 | [63] | HbE trait may reduce the severity of acute P. falciparum | + |
2000 | [85] | HbE trait may enhance the antimalarial effect of artemisinin derivatives | + |
2002 | [21] | HbAE red cells showed increased resistance to invasion of the parasite, although not from HbEE | + |
2004 | [8] | Recent origin of the HbE variant was analyzed by extended linkage disequilibrium and suggested the intense selection as a force | + |
2008 | [91] | For the onset of cerebral malaria, HbE polymorphism is not an important genetic factor | − |
2009 | [80] | Significant increase in the frequency of malaria antibodies to P. falciparum and P. vivax in HbE/β-thalassemia patients | + |
2012 | [88] | Meta-analysis of 2 case-control studies showed that there was no association between HbE and the severity of P. falciparum infection, with the significant heterogeneity | − |
2014 | [39] | A genetic association study was conducted but the sample size was too small to estimate the association with severe malaria | |
2015 | [93] | HbEE, not HbAE, was associated with increased passive case detection of P. falciparum | + |
2015 | [90] | Parasitemia with coexistence of HbE was lower than that of other thalassemia, which also showed that they had lower parasitemia than patients without coexistence of thalassemia | + |
2016 | [53] | Variation in the HbE frequency may be influenced by the selective pressure of malarial presence | + |
2016 | [61] | Despite small sample numbers, presence of HbE did not affect growth of P. falciparum | − |
2017 | [95] | The high ratio of HbE is resultant of the selection by malaria, and high prevalence of co-inheritance of HbAE and G6PD deficiency was reported | + |
2017 | [52] | Multiple origins of HbE gene in the Asian population have been confirmed, and natural selection is responsible for a high ratio and spread of this gene in Southeast Asia | + |
2017 | [79] | HbE/β-thalassemia RBCs triggered the phagocytic function of monocytes | + |
2018 | [64] | Significantly lower P. vivax asexual parasite densities in HbEA heterozygotes were observed when compared with HbAA P. vivax patients | + |
2018 | [66] | HbE does not have an inhibitory role in neither P. falciparum nor P. vivax growth | − |
There are several studies that have been conducted regarding the association between HbE and malaria. A total of 22 studies reported positive association, while negative from 7 studies and 1 for unmeasurable due to small sample size.
Positive (+) or negative (−) relationship between HbE and malaria.
Therefore, readers should be careful regarding the interpretation. While the current research suggests that HbE is a good candidate for fulfilling the malaria hypothesis, richer data with more robust statistics are necessary before drawing a conclusion. Specifically, future research should look for more evidence of a selective sweep near the HbE mutation. Ohashi et al.’ study [8] only looks at a single district in Thailand, and the results have not been reproduced in other studies. If future studies show evidence of a selective sweep near HbE mutations in other Thai populations or in non-Thai populations, this will support the conclusion.
Since the ongoing 1000 Genomes Project includes two potentially relevant populations: Yunnan, China (CDX) and Ho Chi Minh, Vietnam (KHV), this can be an important data source for future HbE research [107]. Other data in Southeast Asia may be also useful [108–110]. Genome-wide Composite of Multiple Signals score, which identifies SNPs and regions that are under recent natural selection in the genome, has been provided only in US (CEU), Nigerian (YRI) and Japanese and Chinese (JPT+CHB) populations [111].
Furthermore, few genetic studies, including genetic association studies and epistasis studies, have focused on HbE or populations where HbE is common. For example, one multi-country study [39] had been conducted without including countries with a high prevalence of HbE (only Vietnam was included among the 11 selected countries; they are mostly in Africa), and this study did not consider the influence of P. vivax, while HbE carriers are mainly populated in the regions where both P. vivax and P. falciparum are endemic.
It appears that there is a research gap in the malaria and hemoglobin literature. One of the potential reasons why research on HbS and HbC have been well-funded and supported, while HbE is not, is that the US government set a priority on researching sickle cell disease in response to pressure by African American advocacy groups starting in 1971, which led to a large allocation of funds for studying sickle cell diseases [112]. However, HbE does not present a sickle cell phenotype and is not classified as thalassemia syndrome despite following the disease pattern of β-thalassemia [16].
Although the present article and many of the cited references focus on the association of HbE, malaria and natural selection in Southeast Asia, new trends have occurred during the past century—migration and urbanization. These may change the evolutionary consequences of HbE. First, there has been a significant Asian migration and Asian births in the USA, many of whom were HbE carriers [113]. In the State of California alone, 25% of Cambodian newborn babies and 11% of Thai or Laotian newborn babies had the HbE variant [113]. Since patients who display HbE along with other Hb mutations or thalassemias are expected to have more severe symptoms with variable health outcomes [41], it may be important to screen adults for hemoglobinopathies at an early stage [47]. Second, it is known that urbanization reduces malaria transmission owing to unsuitable environments for malaria vectors [114], a greater degree of access to health care services [115] and increased number of human population per mosquito vectors [116, 117]. Several studies have shown the impact of urbanization to P. falciparum [114, 115, 118, 119] and P. vivax [120] endemicity. These studies found lower transmission rate in urban areas. The lower risk of malarial infection in urban areas, which means that there are less benefits to having Hb variants against malarial infection.
Both migration and urbanization can alter the level of fitness of HbE in particular environments, which depends on the benefit of protection against malaria and negative health consequences of HbE. Quantifying the influence of migration and urbanization can be one of the directions of future research. Even if it is true that natural selection favors HbE in particularly malaria-rich regions and populations, this may not be the case in other regions and populations, especially in urbanized regions and migrated populations.
Acknowledgement
We would like to show our gratitude to Dr Supan Fucharoen for his review and comments on our former manuscript, although any errors are our own.
Conflict of interest: None declared.
References
- 1. Haldane JBS. The rate of mutation of human genes. Hereditas 2010;35:267–73. [Google Scholar]
- 2. Lederberg J. J. B. S. Haldane (1949) on infectious disease and evolution. Genetics 1999;153:1–3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3. Carter R, Mendis KN.. Evolutionary and historical aspects of the burden of Malaria. Clin Microbiol Rev 2002;15:564–94. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4. Verra F, Bancone G, Avellino P. et al. Haemoglobin C and S in natural selection against Plasmodium falciparum malaria: a plethora or a single shared adaptive mechanism? Parassitologia 2007;49:209–13. [PubMed] [Google Scholar]
- 5. Eridani S. Sickle cell protection from malaria. Hematol Rep 2011;3:e24.. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6. Hedrick PW. Resistance to malaria in humans: the impact of strong, recent selection. Malar J 2012;11:349. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7. Modiano D, Bancone G, Ciminelli BM. et al. Haemoglobin S and haemoglobin C: ‘quick but costly’ versus ‘slow but gratis’ genetic adaptations to Plasmodium falciparum malaria. Hum Mol Genet 2007;17:789–99. [DOI] [PubMed] [Google Scholar]
- 8. Ohashi J, Naka I, Patarapotikul J. et al. Extended linkage disequilibrium surrounding the hemoglobin E variant due to malarial selection. Am J Hum Genet 2004;74:1198–208. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.World Health Organization. World Malaria Report 2017 Geneva, 2017.
- 10.World Health Organization. Guidelines for the Treatment of Malaria Geneva, 2015. [PubMed]
- 11. Perkins SL, Schall JJ.. A molecular phylogeny of malarial parasites recovered from cytochrome b gene sequences. J Parasitol 2002;88:972–8. [DOI] [PubMed] [Google Scholar]
- 12. Escalante AA, Freeland DE, Collins WE. et al. The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome. Proc Natl Acad Sci U S A 1998;95:8124–9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13. Singh B, Daneshvar C.. Human infections and detection of Plasmodium knowlesi. Clin. Microbiol. Rev. 2013;26:165–84. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14. Roberts DJ, Craig BA. et al. Rapid switching to multiple antigenic and adhesive phenotypes in malaria. Nature 1992;357:689. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15. Goheen MM, Campino S, Cerami C.. The role of the red blood cell in host defence against falciparum malaria: an expanding repertoire of evolutionary alterations. Br. J. Haematol. 2017;179:543–56. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16. Kohne E. Hemoglobinopathies: clinical manifestations, diagnosis, and treatment. Dtsch Arztebl Int 2011;108:532–40. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17. Forget BG, Bunn HF.. Classification of the disorders of hemoglobin. Cold Spring Harb Perspect Med 2013;3:a011684.. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18. Huisman THJ. 1 The structure and function of normal and abnormal haemoglobins. Baillière's Clin Haematol 1993;6:1–30. [DOI] [PubMed] [Google Scholar]
- 19. Steinberg MH. Sickle cell anemia, the first molecular disease: overview of molecular etiology, pathophysiology, and therapeutic approaches. Sci World J 2008;8:1295–324. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20. Kwiatkowski DP. How malaria has affected the human genome and what human genetics can teach us about malaria. Am J Hum Genet 2005;77:171–92. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21. Chotivanich K, Udomsangpetch R, Pattanapanyasat K. et al. Hemoglobin E: a balanced polymorphism protective against high parasitemias and thus severe P falciparum malaria. Blood 2002;100:1172–6. [PubMed] [Google Scholar]
- 22. Olson JA, Nagel RL.. Synchronized cultures of P falciparum in abnormal red cells: the mechanism of the inhibition of growth in HbCC cells. Blood 1986;67:997–1001. [PubMed] [Google Scholar]
- 23. Fairhurst RM, Fujioka H, Hayton K. et al. Aberrant development of Plasmodium falciparum in hemoglobin CC red cells: implications for the malaria protective effect of the homozygous state. Blood 2003;101:3309–15. [DOI] [PubMed] [Google Scholar]
- 24. Vernes AJ, Haynes JD, Tang DB. et al. Decreased growth of Plasmodium falciparum in red cells containing haemoglobin E, a role for oxidative stress, and a sero-epidemiological correlation. Trans R Soc Trop Med Hyg 1986;80:642–8. [DOI] [PubMed] [Google Scholar]
- 25. Yuthavong Y, Butthep P, Bunyaratvej A. et al. Inhibitory effect of beta zero-thalassaemia/haemoglobin E erythrocytes on Plasmodium falciparum growth in vitro. Trans R Soc Trop Med Hyg 1987;81:903–6. [DOI] [PubMed] [Google Scholar]
- 26. Nagel RL, Raventos-Suarez C, Fabry ME. et al. Impairment of the growth of Plasmodium falciparum in HbEE erythrocytes. J Clin Invest 1981;68:303–5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27. Pasvol G, Weatherall DJ, Wilson RJ.. Cellular mechanism for the protective effect of haemoglobin S against P. falciparum malaria. Nature 1978;274:701–3. [DOI] [PubMed] [Google Scholar]
- 28. Ingram VM. A specific chemical difference between the globins of normal human and sickle-cell anaemia haemoglobin. Nature 1956;178:792–4. [DOI] [PubMed] [Google Scholar]
- 29. Kilian N, Srismith S, Dittmer M. et al. Hemoglobin S and C affect protein export in Plasmodium falciparum-infected erythrocytes. Biol Open 2015;4:400–10. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30. Verra F, Simpore J, Warimwe GM. et al. Haemoglobin C and S role in acquired immunity against Plasmodium falciparum malaria. PLoS One 2007;2:e978.. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31. Cabrera G, Cot M, Migot-Nabias F. et al. The sickle cell trait is associated with enhanced immunoglobulin G antibody responses to Plasmodium falciparum variant surface antigens. J Infect Dis 2005;191:1631–8. [DOI] [PubMed] [Google Scholar]
- 32. LaMonte G, Philip N, Reardon J. et al. Translocation of sickle cell erythrocyte microRNAs into Plasmodium falciparum inhibits parasite translation and contributes to malaria resistance. Cell Host Microbe 2012;12:187–99. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33. Atkinson A, Barbier M, Afridi S. et al. Evidence for epistasis between hemoglobin C and immune genes in human P. falciparum malaria: a family study in Burkina Faso. Genes Immun 2011;12:481–9. [DOI] [PubMed] [Google Scholar]
- 34. Artavanis-Tsakonas K, Eleme K, McQueen KL. et al. Activation of a subset of human NK cells upon contact with Plasmodium falciparum-infected erythrocytes. J Immunol 2003;171:5396–405. [DOI] [PubMed] [Google Scholar]
- 35. Williams TN, Mwangi TW, Wambua S. et al. Sickle cell trait and the risk of Plasmodium falciparum malaria and other childhood diseases. J Infect Dis 2005;192:178–86. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36. Agarwal A, Guindo A, Cissoko Y. et al. Hemoglobin C associated with protection from severe malaria in the Dogon of Mali, a West African population with a low prevalence of hemoglobin S. Blood 2000;96:2358–63. [PubMed] [Google Scholar]
- 37. Mockenhaupt FP, Ehrhardt S, Cramer JP. et al. Hemoglobin C and resistance to severe malaria in Ghanaian children. J Infect Dis 2004;190:1006–9. [DOI] [PubMed] [Google Scholar]
- 38. May J, Evans JA, Timmann C. et al. Hemoglobin variants and disease manifestations in severe falciparum malaria. JAMA 2007;297:2220–6. [DOI] [PubMed] [Google Scholar]
- 39.Malaria Genomic Epidemiology Network. Reappraisal of known malaria resistance loci in a large multicenter study. Nat Genet 2014;46:1197–204. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 40. Weatherall DJ, Clegg JB.. The Thalassaemia Syndromes. Oxford: Blackwell Science, 2001. [Google Scholar]
- 41. Fucharoen S, Weatherall DJ.. The hemoglobin E thalassemias. Cold Spring Harb Perspect Med 2012;2:a011734. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 42. Orkin SH, Kazazian HH Jr, Antonarakis SE. et al. Abnormal RNA processing due to the exon mutation of beta E-globin gene. Nature 1982;300:768–9. [DOI] [PubMed] [Google Scholar]
- 43. Thein SL. The molecular basis of beta-thalassemia. Cold Spring Harb Perspect Med 2013;3:a011700. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44. Green MR. Pre-mRNA splicing. Annu Rev Genet 1986;20:671–708. [DOI] [PubMed] [Google Scholar]
- 45. Traeger J, Wood WG, Clegg JB. et al. Defective synthesis of HbE is due to reduced levels of beta E mRNA. Nature 1980;288:497–9. [DOI] [PubMed] [Google Scholar]
- 46. Thein SL. Pathophysiology of beta thalassemia—a guide to molecular therapies. Hematology Am Soc Hematol Educ Program 2005;2005:31–7. [DOI] [PubMed] [Google Scholar]
- 47. Olivieri NF, Pakbaz Z, Vichinsky E.. Hb E/beta-thalassaemia: a common & clinically diverse disorder. Indian J Med Res 2011;134:522–31. [PMC free article] [PubMed] [Google Scholar]
- 48. Flatz G. Hemoglobin E: distribution and population dynamics. Humangenetik 1967;3:189–234. [DOI] [PubMed] [Google Scholar]
- 49. Fucharoen G, Fucharoen S, Sanchaisuriya K. et al. Frequency distribution and haplotypic heterogeneity of beta(E)-globin gene among eight minority groups of northeast Thailand. Hum Hered 2002;53:18–22. [DOI] [PubMed] [Google Scholar]
- 50. Kazazian HH Jr, Waber PG, Boehm CD. et al. Hemoglobin E in Europeans: further evidence for multiple origins of the beta E-globin gene. Am J Hum Genet 1984;36:212–7. [PMC free article] [PubMed] [Google Scholar]
- 51. Antonarakis SE, Orkin SH, Kazazian HH Jr. et al. Evidence for multiple origins of the beta E-globin gene in Southeast Asia. Proc Natl Acad Sci U S A 1982;79:6608–11. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 52. Jomoui W, Fucharoen G, Sanchaisuriya K. et al. Molecular analysis of haemoglobin E in Southeast Asian populations. Ann Hum Biol 2017;44:747–50. [DOI] [PubMed] [Google Scholar]
- 53. Liu H, Huang K, Liu S. et al. Gene frequency and haplotype distribution of hemoglobin E among seven minority groups of Yunnan, China. Am J Hum Biol 2016;28:927–31. [DOI] [PubMed] [Google Scholar]
- 54. Chakravarti A, Buetow KH, Antonarakis SE. et al. Nonuniform recombination within the human beta-globin gene cluster. Am J Hum Genet 1984;36:1239–58. [PMC free article] [PubMed] [Google Scholar]
- 55. Smith RA, Ho PJ, Clegg JB. et al. Recombination breakpoints in the human beta-globin gene cluster. Blood 1998;92:4415–21. [PubMed] [Google Scholar]
- 56. Schneider JA, Peto TE, Boone RA. et al. Direct measurement of the male recombination fraction in the human beta-globin hot spot. Hum Mol Genet 2002;11:207–15. [DOI] [PubMed] [Google Scholar]
- 57. Wall JD, Frisse LA, Hudson RR. et al. Comparative linkage-disequilibrium analysis of the b-globin hotspot in primates. Am J Hum Genet 2003;73:1330–40. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58. Antonarakis SE, Boehm CD, Giardina PJ. et al. Nonrandom association of polymorphic restriction sites in the beta-globin gene cluster. Proc Natl Acad Sci U S A 1982;79:137–41. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 59. Bunyaratvej A, Butthep P, Sae-Ung N. et al. Reduced deformability of thalassemic erythrocytes and erythrocytes with abnormal hemoglobins and relation with susceptibility to Plasmodium falciparum invasion. Blood 1992;79:2460–3. [PubMed] [Google Scholar]
- 60. Bunyaratvej A, Butthep P, Yuthavong Y. et al. Increased phagocytosis of Plasmodium falciparum-infected erythrocytes with haemoglobin E by peripheral blood monocytes. Acta Haematol 1986;76:155–8. [DOI] [PubMed] [Google Scholar]
- 61. Lithanatudom P, Wipasa J, Inti P. et al. Hemoglobin E prevalence among ethnic groups residing in malaria-endemic areas of Northern Thailand and its lack of association with Plasmodium falciparum invasion in vitro. PLoS One 2016;11:e0148079.. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 62. Lelliott PM, McMorran BJ, Foote SJ. et al. The influence of host genetics on erythrocytes and malaria infection: is there therapeutic potential? Malar J 2015;14:289. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 63. Hutagalung R, Wilairatana P, Looareesuwan S. et al. Influence of hemoglobin E trait on the severity of Falciparum malaria. J Infect Dis 1999;179:283–6. [DOI] [PubMed] [Google Scholar]
- 64. Deng Z, Li Q, Yi H. et al. Hemoglobin E protects against acute Plasmodium vivax infections in a Kachin population at the China–Myanmar border. J Infect 2018;77:435. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 65. Santiyanont R, Wilairat P.. Red cells containing hemoglobin E do not inhibit malaria parasite development in vitro. Am J Trop Med Hyg 1981;30:541–3. [DOI] [PubMed] [Google Scholar]
- 66. Para S, Mungkalasut P, Chanda M. et al. An observational study of the effect of hemoglobinopathy, alpha thalassemia and hemoglobin E on P. Vivax parasitemia. Mediterr J Hematol Infect Dis 2018;10:e2018015-e2018015.. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 67. Kruatrachue M, Bhaibulaya M, Klongkamnaunkarn K. et al. Haemoglobinopathies and malaria in Thailand. Bull World Health Organ 1969;40:459–63. [PMC free article] [PubMed] [Google Scholar]
- 68. Buffet PA, Safeukui I, Deplaine G. et al. The pathogenesis of Plasmodium falciparum malaria in humans: insights from splenic physiology. Blood 2011;117:381–92. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 69. Cranston HA, Boylan CW, Carroll GL. et al. Plasmodium falciparum maturation abolishes physiologic red cell deformability. Science 1984;223:400–3. [DOI] [PubMed] [Google Scholar]
- 70. Nash GB, O’Brien E, Gordon-Smith EC. et al. Abnormalities in the mechanical properties of red blood cells caused by Plasmodium falciparum. Blood 1989;74:855–61. [PubMed] [Google Scholar]
- 71. Mills JP, Diez-Silva M, Quinn DJ. et al. Effect of plasmodial RESA protein on deformability of human red blood cells harboring Plasmodium falciparum. Proc Natl Acad Sci U S A 2007;104:9213–7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 72. Safeukui I, Correas JM, Brousse V. et al. Retention of Plasmodium falciparum ring-infected erythrocytes in the slow, open microcirculation of the human spleen. Blood 2008;112:2520–8. [DOI] [PubMed] [Google Scholar]
- 73. Fairbanks VF, Gilchrist GS, Brimhall B. et al. Hemoglobin E trait reexamined: a cause of microcytosis and erythrocytosis. Blood 1979;53:109–15. [PubMed] [Google Scholar]
- 74. Leech JH, Barnwell JW, Aikawa M. et al. Plasmodium falciparum malaria: association of knobs on the surface of infected erythrocytes with a histidine-rich protein and the erythrocyte skeleton. J Cell Biol 1984;98:1256–64. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 75. Newbold CI. Intraerythrocytic development and antigenicity of asexual malaria parasites. Mol Biochem Parasitol 1984;11:1–22. [DOI] [PubMed] [Google Scholar]
- 76. Holz GG., Jr, Lipids and the malarial parasite. Bull World Health Organ 1977;55:237–48. [PMC free article] [PubMed] [Google Scholar]
- 77. Sherman IW, Greenan JR.. Altered red cell membrane fluidity during schizogonic development of malarial parasites (Plasmodium falciparum and P. lophurae). Trans R Soc Trop Med Hyg 1984;78:641–4. [DOI] [PubMed] [Google Scholar]
- 78. Udeinya IJ, Miller LH, McGregor IA. et al. Plasmodium falciparum strain-specific antibody blocks binding of infected erythrocytes to amelanotic melanoma cells. Nature 1983;303:429–31. [DOI] [PubMed] [Google Scholar]
- 79. Srinoun K, Nopparatana C, Wongchanchailert M. et al. miR-155 enhances phagocytic activity of beta-thalassemia/HbE monocytes via targeting of BACH1. Int J Hematol 2017;106:638–47. [DOI] [PubMed] [Google Scholar]
- 80. O’Donnell A, Premawardhena A, Arambepola M. et al. Interaction of malaria with a common form of severe thalassemia in an Asian population. Proc Natl Acad Sci U S A 2009;106:18716–21. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 81. Friedman MJ. Oxidant damage mediates variant red cell resistance to malaria. Nature 1979;280:245–7. [DOI] [PubMed] [Google Scholar]
- 82. Lachant NA, Tanaka KR.. Impaired antioxidant defense in hemoglobin E-containing erythrocytes: a mechanism protective against malaria? Am J Hematol 1987;26:211–9. [DOI] [PubMed] [Google Scholar]
- 83. Frischer H, Bowman J.. Hemoglobin E, an oxidatively unstable mutation. J Lab Clin Med 1975;85:531–9. [PubMed] [Google Scholar]
- 84. Roth EF Jr, Schulman S, Vanderberg J. et al. Pathways for the reduction of oxidized glutathione in the Plasmodium falciparum-infected erythrocyte: can parasite enzymes replace host red cell glucose-6-phosphate dehydrogenase? Blood 1986;67:827–30. [PubMed] [Google Scholar]
- 85. Hutagalung R, Wilairatana P, Looareesuwan S. et al. Influence of hemoglobin E trait on the antimalarial effect of artemisinin derivatives. J Infect Dis 2000;181:1513–6. [DOI] [PubMed] [Google Scholar]
- 86. Vitti JJ, Grossman SR, Sabeti PC.. Detecting natural selection in genomic data. Annu Rev Genet 2013;47:97–120. [DOI] [PubMed] [Google Scholar]
- 87. Futuyma DJ. Evolution. Sunderland, MA: Sinauer Associates, Inc, 2013. [Google Scholar]
- 88. Taylor SM, Parobek CM, Fairhurst RM.. Haemoglobinopathies and the clinical epidemiology of malaria: a systematic review and meta-analysis. Lancet Infect Dis 2012;12:457–68. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 89. Oo M, Tin S, Marlar T.. Genetic red cell disorders and severity of falciparum malaria in Myanmar. Bull World Health Organ 1995;73:659–65. [PMC free article] [PubMed] [Google Scholar]
- 90. Kuesap J, Chaijaroenkul W, Rungsihirunrat K. et al. Coexistence of malaria and Thalassemia in malaria endemic areas of Thailand. Korean J Parasitol 2015;53:265–70. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 91. Naka I, Ohashi J, Nuchnoi P. et al. Lack of association of the HbE variant with protection from cerebral malaria in Thailand. Biochem Genet 2008;46:708–11. [DOI] [PubMed] [Google Scholar]
- 92. Kar S, Seth S, Seth PK.. Prevalence of malaria in Ao Nagas and its association with G6PD and HbE. Hum Biol 1992;64:187–97. [PubMed] [Google Scholar]
- 93. Shannon KL, Ahmed S, Rahman H. et al. Hemoglobin E and glucose-6-phosphate dehydrogenase deficiency and Plasmodium falciparum malaria in the Chittagong Hill Districts of Bangladesh. Am J Trop Med Hyg 2015;93:281–6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 94. Flatz G, Pik C, Sundharagiati B.. Malaria and haemoglobin E in Thailand. Lancet 1964;2:385–7. [DOI] [PubMed] [Google Scholar]
- 95. Deng Z, Yang F, Bai Y. et al. Co-inheritance of glucose-6-phosphate dehydrogenase deficiency mutations and hemoglobin E in a Kachin population in a malaria-endemic region of Southeast Asia. PLoS One 2017;12:e0177917.. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 96. Sarkar S, Biswas NK, Dey B. et al. A large, systematic molecular-genetic study of G6PD in Indian populations identifies a new non-synonymous variant and supports recent positive selection. Infect Genet Evol 2010;10:1228–36. [DOI] [PubMed] [Google Scholar]
- 97. Louicharoen C, Patin E, Paul R. et al. Positively selected G6PD-mahidol mutation reduces Plasmodium vivax density in Southeast Asians. Science 2009;326:1546–9. [DOI] [PubMed] [Google Scholar]
- 98. Jallow M, Teo YY, Small KS. et al. Genome-wide and fine-resolution association analysis of malaria in West Africa. Nat Genet 2009;41:657–65. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 99. Ravenhall M, Campino S, Sepúlveda N. et al. Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania. PLoS Genet 2018;14:e1007172–e1007172. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 100. Band G, Rockett KA, Spencer CC. et al. A novel locus of resistance to severe malaria in a region of ancient balancing selection. Nature 2015;526:253–7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 101. Sherva R, Sripichai O, Abel K. et al. Genetic modifiers of Hb E/beta0 thalassemia identified by a two-stage genome-wide association study. BMC Med Genet 2010;11:51. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 102. Nuinoon M, Makarasara W, Mushiroda T. et al. A genome-wide association identified the common genetic variants influence disease severity in β0-thalassemia/hemoglobin E. Hum Genet 2010;127:303–314. [DOI] [PubMed] [Google Scholar]
- 103. Mmbando BP, Mgaya J, Cox SE. et al. Negative epistasis between Sickle and foetal haemoglobin suggests a reduction in protection against malaria. PLoS One 2015;10:e0125929–e0125929. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 104. Penman BS, Pybus OG, Weatherall DJ. et al. Epistatic interactions between genetic disorders of hemoglobin can explain why the sickle-cell gene is uncommon in the Mediterranean. Proc Natl Acad Sci U S A 2009;106:21242–6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 105. Williams TN, Mwangi TW, Wambua S. et al. Negative epistasis between the malaria-protective effects of alpha+-thalassemia and the sickle cell trait. Nat Genet 2005;37:1253–7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 106. Allison AC. Genetic factors in resistance to malaria. Ann N Y Acad Sci 1961;91:710–29. [DOI] [PubMed] [Google Scholar]
- 107.1000 Genomes Project Consortium, Auton A, Abecasis GR. et al. A global reference for human genetic variation. Nature 2015;526:68–74. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 108. Le VS, Tran KT, Bui HTP. et al. A Vietnamese human genetic variation database. Hum Mutat 2019;40:1664–1675. [DOI] [PubMed] [Google Scholar]
- 109. Wu D, Dou J, Chai X. et al. Large-scale whole-genome sequencing of three diverse Asian populations in Singapore. Cell 2019;179:736–749.e15. [DOI] [PubMed] [Google Scholar]
- 110. Wong L-P, Ong R-H, Poh W-T. et al. Deep whole-genome sequencing of 100 southeast Asian Malays. Am J Hum Genet 2013;92:52–66. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 111. Grossman SR, Shylakhter I, Karlsson EK. et al. A composite of multiple signals distinguishes causal variants in regions of positive selection. Science 2010;327:883–886. [DOI] [PubMed] [Google Scholar]
- 112.Association of Public Health Laboratories. Hemoglobinopathies: Current Practices for Screening, Confirmation and Follow-up Sunderland, MA, 2015.
- 113. Lorey F. Asian Immigration and Public Health in California: thalassemia in Newborns in California. J Pediatr Hematol Oncol 2000;22:564–566. [DOI] [PubMed] [Google Scholar]
- 114. Robert V, Macintyre K, Keating J. et al. Malaria transmission in urban sub-Saharan Africa. Am J Trop Med Hyg 2003;68:169–76. [PubMed] [Google Scholar]
- 115. Hay SI, Guerra CA, Tatem AJ. et al. Urbanization, malaria transmission and disease burden in Africa. Nat Rev Microbiol 2005;3:81–90. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 116. Trape JF. Malaria and urbanization in central Africa: the example of Brazzaville. Part IV. Parasitological and serological surveys in urban and surrounding rural areas. Trans R Soc Trop Med Hyg 1987;81(Suppl):26–33. [DOI] [PubMed] [Google Scholar]
- 117. Trape JF, Zoulani A.. Malaria and urbanization in central Africa: the example of Brazzaville. Part III: relationships between urbanization and the intensity of malaria transmission. Trans R Soc Trop Med Hyg 1987;81(Suppl):19–25. [DOI] [PubMed] [Google Scholar]
- 118. Tatem AJ, Guerra CA, Kabaria CW. et al. Human population, urban settlement patterns and their impact on Plasmodium falciparum malaria endemicity. Malar J 2008;7:218. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 119. Omumbo JA, Guerra CA, Hay SI. et al. The influence of urbanisation on measures of Plasmodium falciparum infection prevalence in East Africa. Acta Trop 2005;93:11–21. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 120. Qi Q, Guerra CA, Moyes CL. et al. The effects of urbanization on global Plasmodium vivax malaria transmission. Malar J 2012;11:403. [DOI] [PMC free article] [PubMed] [Google Scholar]