Upcoming direct acting antivirals for hepatitis C patients with a prior treatment failure

Abstract

Despite the high efficacy of direct acting antivirals (DAAs) not all patients successfully clear hepatitis C virus infection, in fact, approximately 1–3% fail to reach a sustained virological response 12 weeks after end of treatment. DAA failures are characterized by advanced liver disease, specific genotypes/subtypes and resistance associated substitutions to the DAA class they have been treated with. Current European Association for the Study of the Liver guidelines recommend three therapeutic options for such patients. The first is a 12 week course of sofosbuvir (SOF), velpatasvir (VEL) and voxilaprevir (VOX), which has shown to be effective in 90–99% of patients and was granted A1 level recommendation. The second option, reserved for patients who have predictors of failure consists in 12 weeks regimen with glecaprevir (GLE) and pibrentasvir (PIB), effective in 90–97%. Finally, although not supported by published data, for especially difficult to treat patients there should theoretically be a benefit in prolonged combinations of SOF+GLE/PIB or SOF/VEL/VOX±ribavirin. This review presents the latest evidence from both clinical trials and real-life on such therapeutic strategies.

INTRODUCTION

The characterization of the hepatitis C virus (HCV) life cycle coupled with the development of in vitro replication models of HCV has allowed the discovery of compounds that inhibit HCV replication, the direct acting antivirals (DAAs) [1]. DAAs can be divided into 3 drug classes based on the HCV protein they target and block. Protease inhibitors (PI) target the NS3 protease which is essential for polyprotein processing and cleavage to release the structural and non structural (NS) HCV proteins, these drugs are characterized by the -previr suffix (glecaprevir [GLE], grazoprevir [GRZ], voxilaprevir [VOX]). Polymerase inhibitors can be divided into nucleoside and non-nucleoside polymerase inhibitors based on the mechanisms which lead to inhibition of the NS5B RNA dependent polymerase. Nucleoside inhibitors include sofosbuvir (SOF), a potent uridine analogue, which acts as a RNA chain terminator during viral RNA synthesis, Non-nucleoside inhibitors include dasabuvir which blocks the NS5B polymerase through allosteric inhibition. This class of compounds is characterized by the -buvir suffix. The last class of DAAs are the NS5A inhibitors which target the NS5A replication complex, a protein without antiviral activity that is key to replication and viral release through stabilization and protection from degradation of the HCV replication process. These NS5A inhibitors are characterized by the suffix -asvir (ledipasvir [LDV], velpatasvir [VEL], pibrentasvir [PIB], elbasvir [EBR]). The DAAs vary in terms of potency (velocity of HCV RNA decrease), barrier to resistance (ability to avoid selection of resistant associated viral substitutions) and genotypic activity [2]. While the first 2 point can be improved by the combination of multiple DAAs, genotypic activity varies among the DAAs, with VEL, SOF, VOX, daclatasvir (DCV), GLE and PIB having pangenotypic activity while GRZ, EBR, LDV, paritaprevir, ombitasvir and dasabuvir having HCV genotype specific activity. To achieve optimal sustained virological response rates (SVR), the marker of HCV cure, DAAs need to be combined. Two possible strategies exist: first using SOF as the back bone and combining it with an NS5A inhibitor (SOF/VEL, SOF/DCV, SOF/LDV) or it with an NS5A inhibitor and a PI (SOF/VEL/VOX). The second strategy combines a PI plus an NS5A inhibitor and does not include SOF (GLE/PIB or GRZ/EBR). All these combinations when used properly are able to achieve SVR rates which top the 95% mark [3]. Re-treatment of patients who fail first-line DAA treatment is more challenging and will be the focus of this review article.

CHARACTERISTICS OF PATIENTS WHO FAILED A DAA COURSE

Failure to DAA treatment is rare, this has been recently confirmed by several real-life cohorts which reported SVR rates in the 97–99% range [4]. From a public health point of view this small percentage translates to a relatively large number of people, with estimates in the European region reporting that in 2020 nearly 47,000 HCV patients will have failed first-line DAA therapy. As highlighted by a recent analysis of the observational TARGET cohort, DAA treatment failures are most likely to be males with advanced fibrosis/cirrhosis and with signs of impaired liver function. A group of people at high risk of development of liver disease, hence in need of effective re-treatment strategies. In areas where genotype dependent DAA regimens have been widely used, treatment failures will be characterized by subtypes who show reduced susceptibility to DAA combinations such as HCV-1a in the USA, HCV-6c-i in Eastern Asia and genotype 4r in Europe and Sub Saharian Africa [5,6]. These HCV strains are characterized by high rate of naturally occurring resistant associated substitutions (RASs) in the NS5A, NS3 and NS5B region which reduce the activity of genotype dependent SOF based regimens. On the other hand, these subtypes do not seem to play a major role in limiting the activity of pangenotypic DAA combinations.

DAA treatment failures are also characterized by prevalence of RAS in the region targeted by the received DAAs. Due to the high replication rate of HCV and the lack of proof reading activity of the NS5B polymerase, HCV genomes which include RASs are continuously generated [2]. While the naturally occurring RASs, i.e., not selected by pharmacological pressure, are usually found in a minority of circulating HCV virions and thus do not affect treatment efficacy, the RAS that have been selected by treatment failure can become present in the majority of the circulating HCV quasispecies hence reducing the efficacy of re-treatment with the same DAA class. When patients who failed a DAA treatment undergo viral sequencing at the time of failure, around 84% of them will show class and drug specific RASs. This prevalence is higher in those who have received an NS5A regimen where nearly 95% of them will have RASs, and lower in those who have received a PI (64%). RASs in the NS5B region that limit the efficacy of nucleotide inhibitors (NUCs) such as SOF are extremely difficult to detect, as these variants usually have low viral fitness and replicate very poorly. If patients who failed DAA treatment undergo regular follow-up with viral sequencing, NS5A RASs will persist for up to 2 years in nearly 90% of the cases. NS3 RASs, on the other hand, will revert to wild type in more than 80% of the cases after 1 year of follow-up [7].

PRINCIPLES GUIDING RE-TREATMENT IN DAA FAILURES

As previously discussed DAA failures are characterized by advanced liver disease, specific genotypes/subtypes and RASs to the DAA class they have failed. For this reason, the principles guiding the re-treatment of these patients differ from those used in firstline treatment. Although precise pre-treatment assessment to exclude significant drug-drug interactions and identify conditions which make DAAs unsafe (decompensated diseases) are still mandatory, most treatment recommendations suggest RAS testing to guide re-treatment [8-10]. While this has yet to be proven cost effective or just effective compared to re-treatment without RAS testing, it is currently used to select “reinforced” re-treatment options. Re-treatment should ideally be based on SOF, as this drug has the highest genetic barrier to resistance of all available DAAs, and should avoid re-treating patients with the same DAA classes that have led to treatment failure. Ribavirin (RBV), which has been abandoned as a first-line treatment option with currently available and approved DAA combinations, can still be considered in particularly difficult patients. However, RBV use has to be weighed against the increase in side effects and the impairment in quality of life associated with its use and the lack of strong data supporting its use [11,12]. Indeed, most recommendations on re-treatment strategies do not stem from clinical trials but should rather be seen as expert opinions.

TREATMENT OPTIONS FOR DAA FAILURES

According to European Association for the Study of the Liver (EASL) 2018 Guidelines [9], there are three options for HCV infected patients who previously failed after a course of DAA.

First-line treatment

The first-line for re-treatment is a 12 weeks SOF/VEL/VOX regimen, and the evidence for such indication was initially based on the POLARIS 1 and 4 trials [13].

POLARIS 1, a phase III multicenter randomized clinical trial, proved both safety and efficacy of SOF/VEL/VOX 12 weeks regimen for patients previously treated with NS5A inhibitors. Among the 263 patients included in the active arm, all genotypes 1 to 6 were represented and 46% (121) had compensated Child-Pugh A cirrhosis. The overall SVR rate was 96%, 99% in the non-cirrhotic subgroup and 93% among those with cirrhosis. Of the 263 actively treated patients 10 did not reach a sustained virological response, of whom 7 had a virological failure, 2 withdrew consent and 1 was lost to follow-up.

The POLARIS 4 trial confirmed the superiority of the triple therapy with SOF/VEL/VOX versus a double drug regimen with SOF/ VEL. In particular, 333 patients who had been previously treated with any DAA regimen except NS5A inhibitors were enrolled and treated; 163 were randomly assigned to receive SOF/VEL/VOX 12 weeks and 151 were assigned to the SOF/VEL same duration arm. The SVR12 rate among the SOF/VEL/VOX arm was 98%, significantly superior to the 90% of the SOF/VEL group (Fig. 1). Table 1 shows a recap of the phase III randomized clinical trials on SOF/ VEL/VOX.

Figure 1.

Sustained virological response (SVR) rates to sofosbuvir/velapatasvir/voxilaprevir in previous direct acting antiviral fauilures. Sofosbuvir/velpatasvir/voxilaprevir for the re-treatment of direct acting antiviral failures. SVR12, sustained virological response at week 12.

Table 1.

Registration Trials of sofosbuvir (SOF)/velpatasvir (VEL)/voxilaprevir (VOX)

Trial	POLARIS 1	POLARIS 4
Participants	263 vs. 152 (placebo arm)	333 (182 vs. 151)
Design	SOF/VEL/VOX vs. placebo	SOF/VEL/VOX vs. SOF/VEL
Duration	12 weeks	12 weeks
Genotypes	1–6	1–4
Compensated cirrhosis	121 (46%)* in the active arm	153 (46%)
Previous DAA experience	-NS5A inhibitor+NS3 inhibitor±NS5B inhibitor: 83 (32%)	-NS5B inhibitor+NS3 inhibitor 46 (25%)
	-NS5A inhibitor+NS5B inhibitor 161 (61%)	-NS5B inhibitor 134 (74%)
	-NS5A inhibitor 18 (7%)
		-SOF/VEL/VOX arm*
Overall SVR12 rate	96% (253/263)	98% (178/182) vs. 90% (136/151)
SVR per single GT	GT1 97% (146/150)	GT1a 98% (53/54)
	GT1a 96% (97/101)	GT1b 96% (23/24)
	GT1b 100% (45/45)	GT2 100% (31/31)
	GT2 5/5	GT3 96% (52/54)
	GT3 95% (74/78)	GT4 100% (19/19)
	GT4 91% (20/22)
	GT5 1/1	SOF/VEL/VOX arm*
	GT6 6/6

DAA, direct acting antiviral; SVR12, sustained virological response (SVR) at week 12; GT, genotype.

^*SOF/VEL/VOX Arm as written on the right.

Additional real-life data, mainly from the US, confirmed high rates of SVR12 in experienced populations treated with 12 weeks SOF/VEL/VOX±RBV. Saxena et al. [14] reported 97% SVR (208/214) in an experienced population (89% and 94% NS5A and NS5B inhibitors respectively), the TRIO Network [15] showed a 99% (163/165) in a similarly experienced group, finally Belperio and colleagues reported SVR rates greater than 90% (≥95% for genotype 1 [GT1], and ≥93% among GT3) in a real-world cohort of 573 non-naive patients [16]. Interesting in the study by Belperio et al. [16], when analyzing patients who previously failed SOF/VEL, SVR rates dropped to 82%, 86% and 85% for genotype 1, 2 and 3 (Table 2).

Table 2.

Sofosbuvir (SOF)/velpatasvir (VEL)/voxilaprevir (VOX) efficacy real-life data

	Study–first author
	Kaiser Permanente– Saxena et al. [14]	TRIO Network– Bacon et al. [15]	Veteran Administration–Belperio et al. [16]
Treatment regimen	SOF/VEL/VOX±RBV 12 w	SOF/VEL/VOX±RBV 12 w	SOF/VEL/VOX 12 w
DAA experience in the overall cohort	85%	88%	100%
SVR 12 among experienced only	97% (208/214)	99% (163/165)	91% (501/551)

RBV, ribavirin; w, weeks; DAA, direct acting antiviral; SVR12, sustained virological response at week 12.

Second-line treatment

For patients infected who previously failed with at least one NS3/4A protease and/or NS5A inhibitor+SOF, and have predictors of poor response such as: advanced liver disease, received multiple courses of DAA and or have complex RAS profile, EASL 2018 guidelines recommend a 12 weeks SOF+GLE/PIB regimen (B2) [9].

Data supporting the use of GLE/PIB came from the MAGELLAN-1 (part 2) study [17], where a cohort of 91 patients (GT1 and GT4, 30% cirrhotic) were randomized 1:1 to receive either 12 or 16 weeks of GLE/PIB. Results showed a SVR12 rate of 89% for the group treated with the short regimen, and 91% for those who received 16 weeks. GLE/PIB was particularly effective among patients naïve or with single DAA experience while SVR rates among those previously treated with both NS5A and NS3/4A inhibitors was suboptimal, possibly due to a low barrier to resistance of GLE/PIB. Thus, the indication for the SOF add-on.

Real-life data by Sulkowski and colleagues [18] reported a 95% SVR12 rate in participants with GT1 infection (94% for non-cirrhotic and 97% for cirrhotic, respectively), hence supporting the use of 16 weeks GLE/PIB regimen for re-treatment of prior NS5Ai/ SOF±RBV GT 1 regardless of the presence of cirrhosis (Fig. 2).

Figure 2.

SVR rates following re-treatment of direct acting antiviral (DAA) failures with glecaprevir/pibrentasvir. Glecaprevir/pibrentasvir for the retreatment of DAA failures. SVR12, sustained virological response at week 12; w, weeks.

Third-line treatment

Finally, the third EASL 2018 treatment recommendation suggests the possibility of extending treatment duration for either SOF/VEL/VOX or SOF/GLE/PIB, both with or without RBV, in particularly difficult cases, namely patients with NS5A RASs who failed twice to achieve SVR after a combination regimen including a protease and/or an NS5A inhibitor. However, this recommendation is not supported by published data and such decision should be taken by expert multidisciplinary teams for each patient in consideration of his clinical condition and virological profile.

Re-treatment of patients with decompensated cirrhosis

All the EASL endorsed regimens for the re-treatment of DAA failures are based on a PI. PIs are metabolized in the liver and excreted in bile. For this reason pharmacokinetic properties of PIs are influenced by the degree of liver function impairment. Patients with decompensated cirrhosis (Child Pugh B and C) have reduced activity of the CYP3a4 enzyme family, have spontaneous intra hepatic shunts which decrease the quantity of drug which is metabolized or excreted by the liver and also have reduced drug protein binding due to reduced albumin synthesis. Thus when given in volunteers with Child Pugh (CPT) B and C cirrhosis, PIs show an increase in plasma concentration of 5 and 12 times respectively [19]. This increase in PIs concentration is associated with significant side effects as shown by several studies reporting cases of death, sepsis and liver transplantation [17,20]. For this reason PIs are contraindicated in CPT B and C and should be managed with caution in CPT A6 [9] (EASL 2018). The efficacy of SOF/VEL given for 24 weeks plus RBV was studied in 69 patients who had previously failed a DAA (59% failed SOF/VEL and 39% failed SOF/VEL/VOX) [21]. Overall the SVR rate was 91%, with similarly high SVR rates in patients with HCV-1 (97%) and HCV-2 (93%). On the other hand, SVR rates were suboptimal in HCV-3 patients (78%). This was due to the presence of RASs in the NS5A region, in the 76% of enrolled HCV-3 patients who showed NS5A RASs the overall SVR dropped to 77%. In HCV-1 and 2 the presence of baseline RASs did not have such a dramatic effect, as the SVR was 100% and 89% respectively. The study findings highlight that previous DAA failures with decompensated disease remain a group of patients where treatment efficacy is sub-optimal.

CONCLUSIONS

Evidence coming from clinical trials as well as real-life studies is gathering on the efficacy of DAAs in the re-treatment of previous failures. Efficacy of SOF/VEL/VOX is elevated across genotypes and stages of disease severity, although some real-life cohorts reported suboptimal results in those who had previously failed SOF/ VEL. GLE/PIB given for 16 weeks has demonstrated high SVR rates although in a relatively small study. The combination of SOF+GLE/PIB or SOF/VEL/VOX+RBV have been understudied, but in theory should provide patients with the best SVR rate even in the presence of multiple predictive factors of failure. All these regimens include a PI, a drug class which is still contraindicated in patients with decompensated cirrhosis due to increased risk of side effects, liver function deterioration and death. In patients with decompensated cirrhosis the current recommended regimen is the combination of SOF/VEL+RBV for 24 weeks, a regimen which might achieve suboptimal SVR rates in those with baseline NS5A RASs. This highlights the need for quick access to first-line DAA treatment and to re-treatment options to avoid progression of liver disease to decompensated cirrhosis and lack of effective DAA combinations.

Abbreviations

DAA

direct acting antiviral

DCV

daclatasvir

EBR

elbasvir

GLE

glecaprevir

GRZ

grazoprevir

HCV

hepatitis C virus

LDV

ledipasvir

NUCs

nucleotide inhibitor

PI

protease inhibitor

PIB

pibrentasvir

RASs

resistant associated substitutions

RBV

ribavirin

SOF

sofosbuvir

SVR

sustained virological response rates

VEL

velpatasvir

VOX

voxilaprevir