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. 2019 Dec 24;10(67):7156–7178. doi: 10.18632/oncotarget.27327

Table 1. List of prognostic microRNAs in breast cancer.

Prognostic microRNA Breast cancer type Detection method Prognostic value Role Biological sample References
let-7 BC not
classified
qRT-PCR potential prognostic
biomarker as altered levels
of miR-let-7 are associated
with metastases risk
tumor
suppressor
serum [56]
let-7-3p TNBC NGS, qRT-
PCR
independent prognostic
factor for OS, DFS
onco-miR FFPE [57]
let-7b luminal subtype qRT-PCR,
LNA-ISH,
TMAs
independent prognostic
factor for OS associated
with luminal tumors
tumor
suppressor
FFPE [58]
let-7c/miR-
99a/miR-125b
cluster
estrogen-
dependent
BC cell line
Nanostring,
qRT-PCR,
luciferase assay
potential prognostic factor
for OS in the luminal A
subtype
tumor
suppressor
cell lines [59]
miR-1 ER-positive,
stage IV BC
PCR,
microarray,
ISH, IHC
independent worse
prognostic factor of DFS
and BC-specific survival
associated with stage,
lymph node metastasis,
distant metastasis,
histological grade, ER
status, PR status and Ki-67
onco-miR FFPE [60]
miR-7 BC not
classified
qRT-PCR potential prognostic factor
for OS, DFS predictive
of an adverse response to
tamoxifen therapy
onco-miR fresh frozen
tissue, cell lines
[61]
miR-9 TNBC,
BC not
classified
qRT-PCR prognostic factor of DFS
and DMFS, OS
onco-miR FFPE, fresh
frozen tissue,
cell lines
[62, 63]
miR-10b BC not
classified,
TNBC
qRT-PCR independent prognostic
factor for DFS associated
with distant metastasis,
occurrence in TNBC,
associated with genico-
obstetric history
onco-miR FFPE, fresh
frozen tissue,
cell lines
[17, 40, 41, 64]
miR-15a TNBC qRT-PCR prognostic factor for OS,
DFS
tumor
suppressor
fresh frozen
tissue
[65]
miR-16 triple
possitive
BC
qRT-PCR,
Western blot,
luciferase
report assay,
MTS assay
potentially tumor
suppressive effect on
cancer progression of ER
positive breast cancers,
impairment of cell proliferation
tumor
suppressor
FFPE [45]
miR-19a newly
diagnosed
IBC stage
III, IBC
stage IV,
non-IBC
stage II-IV
and HER2+
BC
qRT-PCR potential prognostic factor
for OS, DFS in patients
with metastatic HER2(+)
IBC.
tumor
suppressor
serum, cell
lines
[66]
miR-19b BC not
classified
qRT-PCR prognostic factor for OS
associated with distant
metastasis and TNM stage
onco-miR fresh frozen
tissue, cell lines
[67]
miR-20b-5p BC not
classified
microRNA
arrays
potential prognostic factor
for DFS, correlated with
the presence of breast
tumor interstitial fluid
onco-miR FFPE,
interstitial
breast tumor
fluids, serum
[68]
miR-21 stage II/III
BC, HER2
positive, TNBC
qRT-PCR,
microarray,
luciferase
report assay
independent prognostic
factor of OS, DFS,
prognostic biomarker for
resistance to trastuzumab,
to predict lymph node
metastases occurrence
in TNBC, to predict
high grade in non TNBC
possible, prognostic factor
in daughter of patients,
associated with genico-
obstetric history
onco-miR FFPE, serum,
fresh frozen
tissue, cell lines
[16-27]
miR-22 BC not
classified
qRT-PCR,
ISH, luciferase
report assay
potential prognostic factor
for OS, DFS, associated
with EMT/metastasis
both FFPE, cell lines [69, 70]
miR-24-2*. BC cell
lines
qRT-PCR associated with tumor
suppressive activity
through the suppression of
cellular survival
tumor
suppressor
cell lines, fresh
frozen mouse
tissue
[71]
mir-24-3p BC not
classified
(stage I-III)
Nanostring
technology
potential prognostic
biomarker of occult
metastasis
onco-miR plasma [72]
miR-27a BC not
classified
ISH, IHC independent prognostic
factor for OS, DFS
onco-miR FFPE [73]
miR-27b-3p TNBC qRT-PCR independent prognostic
factor for OS, DMF survival
onco-miR FFPE [74]
miR-29a BC not
classified
qRT-PCR,
microarray
asocciated with
poor response and
chemotherapy resistance
onco-miR FFPE, cell lines [75]
miR-29b lobular
and ductal
subtypes
qRT-PCR prognostic factor for OS,
DFS
tumor
suppressor
fresh frozen
tissue
[76, 77]
miR-30a TNBC NGS,
qRT-PCR,
microarray, luciferase assay
independent prognostic
factor for OS, DFS
tumor
suppressor
FFPE, cell lines [57, 78]
miR-30a-3p TNBC qRT-PCR prognostic factor for OS,
RFS
tumor
suppressor
FFPE [57]
miR-30a-5p TNBC NGS prognostic factor for OS,
RFS
tumor
suppressor
FFPE [57]
miR-30c-5p TNBC qRT-PCR prognostic factor for
RFS
tumor
suppressor
FFPE [57]
miR-30e* ESR1-/
ERBB2-
tumors
microarray,
ISH
prognostic factor for DFS tumor
suppressor
fresh frozen
tissue
[79]
miR-34a BC not
classified
TNBC
qRT-PCR,
TMAs
prognostic factor for OS,
associated with response
and chemotherapy
resistance
both FFPE, plasma,
cell lines
[75, 80, 81]
miR-34b TNBC qRT-PCR prognostic factor for OS,
DFS
onco-miR FFPE [82]
miR-34c TNBC qRT-PCR independent risk factor
for OS
tumor
suppressor
Plasma [81]
miR-93-5p BC not
classified
microRNA
arrays
potential prognostic factor
for DFS, correlated with
the presence of breast
tumor interstitial fluid
onco-miR FFPE,
interstitial
breast tumor
fluids, serum
[68]
miR-95-3p TNBC qRT-PCR prognostic factor for OS,
RFS in patients treated
with anthracycline-based
chemotherapy
onco-miR FFPE [57]
miR-96 BC cell
lines
qRT-PCR potential prognostic factor
for OS associated with
EMT and regulation of
growth factors involved in
G1/S-phase transition
onco-miR cell lines [44]
miR-99a BC not
classified
qRT-PCR potential prognostic factor
for OS, independent risk
factor for breast cancer
tumor
suppressor
serum [83]
miR-122 BC not
classified
(stage II-III)
qRT-PCR,
NGS
potential prognostic
factor for disease relapse,
predictor of metastasis
onco-miR serum [84]
miR-124 BC not
classified
qRT-PCR prognostic factor for
OS associated with
advanced TNM stage,
lymph node metastasis
and poorer pathological
differentiation, associated
with age at diagnosis (>50
years old)
tumor
suppressor
FFPE, fresh
frozen tissue
[85, 86]
miR-125a-5p BC not
classified
microarray,
qRT-PCR,
luciferase
assay, ISH,
IHC
potential prognostic factor
for OS, progression-free
survival (PRS)
tumor
suppressor
serum, cell
lines
[87]
miR-125b HER2
positive BC,
stage II/III
qRT-PCR, ISH prognostic factor for
OS, DFS, associated
with aromatase inhibitor
esistant breast cancers
onco-miR FFPE, serum,
cell lines
[26, 88, 89]
miR-126-5p BC not
classified
microRNA
arrays
potential prognostic factor
for DFS
onco-miR FFPE,
interstitial
breast tumor
fluids, serum
[68]
miR-127 BC not
classified
qRT-PCR prognostic factor of OS tumor
suppressor
fresh frozen
tissue, cell lines
[90]
miR-128-3p TNBC qRT-PCR prognostic factor for RFS tumor
suppressor
FFPE [57]
miR-129-5p BC not
classified
qRT-PCR,
luciferase
report assay
potential prognostic factor
for OS, DFS, associated
with EMT
tumor
suppressor
FFPE, fresh
frozen tissue,
cell lines
[91]
miR-133a BC not
classified
qRT-PCR,
TMA, ISH,
Luciferase assay
potential prognostic factor
for DFS associated with
migration and invasion
tumor
suppressor
FFPE, fresh
frozen tissue,
cell lines
[92]
miR-140 BC not
classified
qRT-PCR,
microarray
asocciated with
poor response and
chemotherapy resistance
onco-miR FFPE, cell lines [75]
miR-141 BC not
classified
microRNA
arrays, qRT-
PCR
potential prognostic factor
for OS, PFS associated
with circulating tumor
cells status
onco-miR plasma [33, 34]
miR-143 Triple
possitive
BC
qRT-PCR,
Western blot,
luciferase
report assay,
MTS assay
potentially tumor
suppressive effect on
cancer progression of ER
positive breast cancers,
impairment of cell
proliferation
tumor
suppressor
FFPE [45]
miR-144 BC not
classified
microRNA
arrays, qRT-
PCR
potential prognostic factor
for OS, PFS
tumor
suppressor
plasma [34]
miR-145 BC not
classified
qRT-PCR potential prognostic factor
for DFS, OS (3-year
survival rate)
tumor
suppressor
fresh frozen
tissue
[93, 94]
miR-146a BRCA1-
deficient
TNBC
tumors
qRT-PCR potential prognostic factor
for OS
tumor
suppressor
FFPE, cell lines [95]
miR-148a TNBC qRT-PCR,
microarray
potential prognostic factor
for OS associated with
metastasis
tumor
suppressor
Cell lines,
mouse models
[96]
miR-155 TNBC,
BC not
classified
qRT-PCR,
microarray,
luciferase
report assay
prognostic factor of
DMFS, associated with
lymph node metastasis
both FFPE, fresh
frozen tissue,
cell lines
[62, 97]
miR-182 BC not
classified,
TNBC
qRT-PCR potential prognostic factor
to predict lymph node
metastases occurrence in
TNBC, associated with
genico-obstetric history,
related with hormonal
receptors
onco-miR FFPE, serum [17, 98]
miR-183/182/96
cluster
BC not
classified
qRT-PCR, ISH potential prognostic factor
for OS, DFS
onco-miR breast tissues
not classified,
cell lines
[99]
miR-187 BC not
classified
TMA, ISH independent prognostic
factor FOR breast cancer–
specific survival (BCSS)
onco-miR FFPE, cell lines [100]
miR-193b BC not
classified
microRNA
arrays, qRT-
PCR
potential prognostic factor
for OS, PFS
onco-miR plasma [34]
miR-195-5p BC not
classified
microRNA
arrays
potential prognostic factor
for DFS
onco-miR FFPE,
interstitial
breast tumor
fluids, serum
[68]
miR-199a-5p TNBC NGS prognostic factor for OS tumor
suppressor
FFPE [57]
miR-199b-5p BC not
classified
(-II stage)
qRT-PCR,
assays in vitro
potential prognostic factor
for OS associated with
TNM stage and lymph
node metastasis
tumor
suppressor
fresh frozen
tissue and cell
lines
[101]
miR-200a BC not
classified
microRNA
arrays, qRT-
PCR
potential prognostic factor
for OS, PFS, associated
with circulating tumor
cells status, potential
to detect the onset of
metastasis
onco-miR plasma [33, 34]
miR-200b BC not
classified
qRT-PCR,
microRNA
arrays,
ISH, TMA,
luciferase
report assay
potential prognostic factor
for OS (independent),
PFS associated with
advanced clinical
stage, metastasis, cell
proliferation, apoptosis,
cell cycle distribution and
circulating tumor cells
status, potential to detect
the onset of metastasis
both FFPE, plasma,
cell lines
[33, 34, 46, 47]
miR-200c BC not
classified
qRT-PCR,
microRNA
arrays
prognostic factor of OS,
DFS, potential to detect
the onset of metastasis,
associated with circulating
tumor cells status
onco-miR fresh frozen
tissue, plasma
[33, 34, 102]
miR-200c/141
cluster
BC not
classified,
TNBC
qRT-PCR,
CAT reporter
assay, siRNA
transfection,
Western blot
poor prognostic factor
in TNBC, promoting
metastasis
onco-miR FFPE, cell
lines, xenograft
animal model
[103]
miR-203 BC not
classified,
ER positive
BC
microRNA
arrays, qRT-
PCR, Western
blot, luciferase
report assay,
MTS assay
potential prognostic factor
for OS, PFS associated
with EMT and circulating
tumor cells status
both FFPE, plasma,
cell lines
[33, 34, 44, 45]
miR-203-5p TNBC NGS prognostic factor for OS onco-miR FFPE [57]
miR-203a ductal
in situ,
invasive
ductal and
lobular carcinoma
qRT-PCR potential prognostic
marker associated with
increased stage in invasive
lobular carcinomas
tumor
suppressor
FFPE [104]
miR-204 BC not
classified
qRT-PCR potential prognostic factor
for OS, DFS, correlated
with chemotherapeutic
resistance
tumor
suppressor
FFPE [105]
miR-205 BC not
classified
qRT-PCR,
LNA-ISH,
TMAs, IHC
potential prognostic
factor for OS associated
with tumours of ductal
morphology, for OS and
DFS in early breast cancer
tumor
suppressor
FFPE [21, 58]
miR-206 BC not
classified
qRT-PCR,
luciferase
report assay
potential prognostic factor
for OS
both fresh frozen
tissue, cell lines
[94, 106, 107,
miR-210 early first
primary BC,
TNBC
qRT-PCR,
microarray
independent prognostic
factor for OS, DFS,
associated with poor
clinical outcome in ER-
positive, tamoxifen-treated
BC patients, involved
in cell proliferation,
migration and invasion,
Potential to detect the
onset of metastasis prior
to clinical diagnosis,
associated with circulating
tumor cells status
onco-miR FFPE, fresh
frozen tissue,
plasma, cell
lines (Breast
cancer and
tumor-educated
macrophages)
[33-39]
miR-210-3p BC cell
lines
qRT-PCR potential prognostic factor
for OS associated with
EMT and regulation of
growth factors involved in
G1- to S-phase transition
onco-miR cell lines [44]
miR-215 BC not
classified
microRNA
arrays, qRT-
PCR
potential prognostic factor
for OS, PFS, Potential
to detect the onset of
metastasis prior to clinical
diagnosis
tumor
suppressor
plasma [34]
miR-218 BC not
classified
qRT-PCR prognostic factor for OS
associated with lymph
node metastases, higher
grades,
tumor
suppressor
fresh frozen
tissue
[108]
miR-221 BC not
classified
qRT-PCR prognostic factor for DFS,
OS, RFS
onco-miR FFPE, fresh
frozen tissue,
cell lines
[41, 63, 109]
miR-221-3p TNBC qRT-PCR prognostic factor for DFS tumour
suppressor
FFPE, cell lines [110]
miR-222 BC not
classified
qRT-PCR,
TMA
potential prognostic
factor related to lymph
node metastasis, down-
regulation of the estrogen
receptor, EMT, tumor
progression, poor response
and chemotherapy
resistance
onco-miR FFPE, fresh
frozen tissue,
cell lines
[75, 109]
miR-222-3p BC not
classified
qRT-PCR,
microarray
independent prognostic
factor for DFS
postoperatively
onco-miR serum [111]
miR-301a BC not
classified,
TNBC
qRT-PCR,
microarray,
ISH
prognostic factor for DFS,
OS
onco-miR FFPE [112, 113]
miR-320a BC not
classified
chromogenic
ISH
potential prognostic factor
for OS for invasive breast
cancer
tumor
suppressor
FFPE [114]
miR-324-5p TNBC NGS prognostic factor for OS onco-miR FFPE [57]
miR-329 BC not
classified
qRT-PCR independent prognostic
factor for OS
tumor-
suppressor
serum, fresh
frozen tissue,
cell lines
[115]
miR-330-3p BC not
classified
qRT-PCR potential prognostic factor
for OS
onco-miR fresh frozen
tissue
[116]
miR-339-5p BC not
classified
qRT-PCR,
TMA, ISH
independent prognostic
factor for OS, DFS
tumor
suppressor
FFPE, cell lines [117]
miR-361-5p BC not
classified, TNBC
TMAs, ISH prognostic factor for DFS tumor
suppressor
FFPE [118]
miR-365 BC not
classified
microRNA
arrays, qRT-
PCR
potential prognostic factor
for OS
miR-365,
onco-miR
plasma [34]
miR-370 BC not
classified
qRT-PCR,
TMA
potential prognostic factor
for DFS
onco-miR FFPE [119]
miR-374a BC not
classified,
IDC stage II
qRT-PCR,
TMAs,
Luciferase
assay, MTT
assays, IHC
potential prognostic factor
for DFS, contributes
to tumorigenicity and
progression
onco-miR FFPE, fresh
frozen tissue,
cell lines,
xenograft
mouse models
[120, 121]
miR-375 BC not
classified,
stage II-III
locally
advanced
and IBC
patients
qRT-PCR,
microRNA
arrays, NGS
potential prognostic factor
for OS, PFS associated
with circulating tumor
cells status, related to
hormonal receptors
both serum, plasma [33, 34, 84, 98]
miR-409-3p BC not
classified
qRT-PCR independent prognostic
factor for OS associated
with advanced TNM stage,
lymph node metastasis,
and poorer pathological
differentiation
tumor
suppressor
fresh frozen
tissue
[112]
miR-423 BC not
classified
qRT-PCR,
microarray
asocciated with
poor response and
chemotherapy resistance
onco-miR FFPE, cell lines [75]
miR-429 BC not
classified
microRNA
arrays, qRT-
PCR
potential prognostic factor
for OS, PFS
miR-429
onco-miR
plasma [34]
miR-451 BC cell
lines
qRT-PCR potential factor associated
with cell survival and
endocrine resistance
tumor
suppressor
cell lines [123]
miR-454 BC not
classified
(stage I-III)
TMA, ISH potential prognostic
factor for OS (especially
in TNBC) and DFS,
associated with response
to anthracycline
onco-miR FFPE [124]
miR-454-3p BC not
classified
microRNA
arrays
potential prognostic factor
for DFS
onco-miR FFPE,
interstitial
breast tumor
fluids, serum
[68]
miR-486-5p BC not
classified
microRNA
arrays, qRT-
PCR
potential prognostic factor
for OS, Potential to detect
the onset of metastasis
prior to clinical diagnosis
tumor
suppressor
plasma [34]
miR-493 TNBC TMAs, ISH prognostic factor for DFS tumour
suppressor
FFPE [125]
miR-494 node-
negative BC
ISH 8.5-fold risk of breast
cancer death (association
trend-not clinical
significance)
tumour
suppressor
fresh frozen
tissue
[126]
miR-497 BC not
classified,
TNBC
qRT-PCR,
luciferase assay
potential prognostic factor
for OS
tumor
suppressor
fresh frozen
tissue,
cell lines,
orthotopic
mouse models
[127, 128]
miR-548c-5p TNBC qRT-PCR, ISH independent prognostic
factor for OS, DFS
onco-miR FFPE [39]
miR-574 BC not
classified
qRT-PCR,
microarray
asocciated with
poor response and
chemotherapy resistance
onco-miR FFPE, cell lines [75]
miR-574-3p BC not
classified
qRT-PCR,
NGS
potential prognostic factor
for OS, DFS
tumor
suppressor
FFPE [129]
miR-588 BC not
classified
qRT-PCR prognostic factor of OS tumour
suppressor
fresh frozen
tissue, cell lines
[130]
miR-590-3p BC cell
lines
qRT-PCR,
luciferase
report assay
associated with breast
cancer cells viability,
growth and apoptosis
tumor
suppressor
cell lines [131]
miR-597 BC not
classified
qRT-PCR prognostic factor of OS tumor
suppressor
fresh tissue [132]
miR-601 BC not
classified
qRT-PCR prognostic factor for
DFS associated with
cell proliferation and
metastasis
tumor
suppressor
FFPE, cell lines [133]
miR-638 BC not
classified,
BRCA1-
deficient
TNBC
tumors
qRT-PCR independent prognostic
factor for OS associated
with lymph node
metastasis and TNM stage
tumor
suppressor
FFPE, fresh
frozen, cell
lines
[95, 134]
miR-644a BC cell
lines
qRT-PCR,
luciferase
report assay
associated with tumor
progression and distant
metastasis-free survival
tumor
suppressor
cell lines [135]
miR-660-5p BC not
classified
qRT-PCR,
NGS
potential prognostic factor
for OS, DFS
onco-miR FFPE [129]
miR-711 BC not
classified
qRT-PCR independent prognostic
factor for OS, DFS,
associated with breast
cancer cells’ proliferation,
colony formation, invasion
onco-miR FFPE, cell lines [136]
miR-744 BC not
classified
qRT-PCR,
microarray
associated with
poor response and
chemotherapy resistance
onco-miR FFPE, cell lines [75]
miR-801 BC not
classified
microRNA
arrays, qRT-
PCR
potential prognostic factor
for OS, PFS associated
with circulating tumor
cells status
onco-miR plasma [33, 34]
miR-874 BC not
classified
qRT-PCR prognostic factor for OS tumour
suppressor
fresh frozen
tissue, cell lines
[137]
miR-940 IDC, TNBC qRT-PCR prognostic factor for OS tumor suppressor serum [138]
miR-1179 BC not
classified
RT-PCR independent prognostic
factor for OS
tumor
suppressor
breast tissue
not classified,
cell lines
[139]
miR-1247-5p BC not
classified
qRT-PCR independent prognostic
indicator for DFS, OS
tumor
suppressor
FFPE, fresh
frozen tissue,
cell lines
[140, 141]
miR-1260 BC not
classified
microRNA
arrays, qRT-
PCR
potential prognostic factor
for OS
onco-miR plasma [34]
miR-1274a BC not
classified
microRNA
arrays, qRT-
PCR
potential prognostic factor
for OS, PFS
onco-miR plasma [34]
miR-1274b BC not
classified
microRNA
arrays
potential prognostic factor
for DFS
onco-miR FFPE,
interstitial
breast tumor
fluids, serum
[68]
miR-1825 BC not
classified
microRNA
arrays
potential prognostic factor
for DFS
onco-miR FFPE,
interstitial
breast tumor
fluids, serum
[68]
miR-3178 BC not
classified
qRT-PCR,
microarray
associated with
poor response and
chemotherapy resistance
onco-miR FFPE, cell lines [75]
miR-4653-3p HR+ BC
(stage I~III)
qRT-PCR potential prognostic
biomarker for DFS for
patients treated with
adjuvant tamoxifen
tumor
suppressor
FFPE [142]
miR-6780b BC not
classified
qRT-PCR,
microarray
associated with
poor response and
chemotherapy resistance
onco-miR FFPE, cell lines [75]

Abbreviations: quantitative reverse transcriptase real-time polymerase chain reaction (qRT-PCR), In situ hybridization (ISH), locked nucleic acid probe in situ hybridization (LNA-ISH), Immunohistochemistry (IHC), epithelial-mesenchymal transition (EMT), formalin-fixed paraffin embedded (FFPE), Next Generation Sequencing (NGS), overall survival (OS), relapse free survival (RFS), disease free survival (DFS), progress free survival (PFS), breast cancer (BC), triple negative breast cancer (TNBC), Inflammatory breast cancer (IBC), Invasive Ductal Carcinoma (IDC), estrogen receptor (ER), progesterone receptor (PR), human epidermal growth factor receptor type 2 (HER2).