Abstract
The data in this article are related to the research article “Utilizing the Regioselectivity of Perfluoropyridine towards the Preparation of Phenyoxyacetylene Precursors for Partially Fluorinated Polymers of Diverse Architecture.”1 The X-ray structure analysis of 3,5-difluoro-2,6-bis(4-iodophenoxy)-4-phenoxypyridine has revealed an asymmetric unit containing two molecules, linked via both Type I and Type II C–I∙∙∙I–C halogen bonding interactions. The packing is further consolidated via Ar–H∙∙∙π interactions. This compound has been utilized for the synthesis of monomers for linear and network polymers.
Keywords: Pentafluoropyrinde, Perfluoropyridine, Halogen bonding, Solid state X-ray
Specifications table
| Subject | Organic Chemistry |
| Specific subject area | Solid-state interactions in 3,5-difluror-2,6-bis(4-iodophenoxy)-4-phenoxypyridine |
| Type of data | Tables of detailed X-ray crystal data and Cartesian coordinates Figures of X-ray crystal packing |
| How data were acquired | Single-crystal X-ray diffraction Instrument: Bruker D8 Venture diffractometer equipped with Mo Kα radiation and a Photon 100 detector Software: SHELXT 2014/5 and SHELXL 2016/6 |
| Data format | X-ray (raw and analysed) |
| Parameters for data collection | Hemispheres of data were collected using strategies of scans about the omega and phi axes with frame widths of 0.5. Data collection, unit cell determination, data reduction, absorption correction, and scaling were performed using the Bruker Apex3 software suite: Apex3, AXScale and SAINT, version 2017.3-0; Bruker AXS Inc.: Madison, WI, 2017. |
| Data source location | Department of Chemistry and Chemistry Research Center, United States Air Force Academy, Colorado Springs, CO Department of Chemistry, Clemson university, Clemson, SC |
| Data accessibility | The Cambridge Crystallographic Data Centre no. CCDC 1947916 (http://www.ccdc.cam.ac.uk/conts/retrieving.html, email: deposit@ccdc.cam.ac.uk.). |
| Related research article | C.A. Corley, K. Kobra, A.J. Peloquin, K. Salmon, L. Gumireddy, T.A. Knoerzer, C.D. McMillen, W.T. Pennington, A.M. Schoffstall, S.T. Iacono. Utilizing the Regioselectivity of Perfluoropyridine towards the Preparation of Phenyoxyacetylene Precursors for Partially Fluorinated Polymers of Diverse Architecture, J. Fluorine Chem., 2019, 228, IN PRESS, https://doi.org/10.1016/j.jfluchem.2019.109409. |
Value of the Data
|
1. Data
The crystal packing of 3,5-difluoro-2,6-bis(4-iodophenoxy)-4-phenoxypyridine is shown, with C–I∙∙∙I–C Type I and Type II (Fig. 1) and Ar–H∙∙∙π (Fig. 2) interactions highlighted. What are also presented in the article are the detailed X-ray crystal data (Table 1, Table 2), atomic coordinates (Table 3), and bond lengths and angles (Table 4, Table 5, Table 6, Table 7).
Fig. 1.
The crystal packing of D8_1390_PFPyPhI. Displacement ellipsoids are shown at the 50% probability level. Ar–I∙∙∙I interactions are shown as magenta dashed lines.
Fig. 2.
Ar–H∙∙∙π interactions in D8_1390_PFPyPhI (shown as magenta dashed lines). Displacement ellipsoids are shown at the 50% probability level.
Table 1.
Sample and crystal data for D8_1390_PFPyPhI.
| Identification code | D8_1390_PFPyPhI | |
| Chemical formula | C23H13F2I2NO3 | |
| Formula weight | 643.14 g/mol | |
| Temperature | 100 (2) K | |
| Wavelength | 0.71073 Å | |
| Crystal size | 0.067 × 0.088 × 0.450 mm | |
| Crystal system | orthorhombic | |
| Space group | P n n 2 | |
| Unit cell dimensions | a = 23.9615 (11) Å | α = 90° |
| b = 30.1347 (13) Å | β = 90° | |
| c = 5.8713 (2) Å | γ = 90° | |
| Volume | 4239.5 (3) Å3 | |
| Z | 8 | |
| Density (calculated) | 2.015 g/cm3 | |
| Absorption coefficient | 3.010 mm−1 | |
| F(000) | 2448 | |
Table 2.
Data collection and structure refinement for D8_1390_PFPyPhI.
| Theta range for data collection | 2.64–25.50° | |
| Index ranges | −29 ≤ h<=28, −36 ≤ k<=36, −6 ≤ l<=7 | |
| Reflections collected | 34227 | |
| Independent reflections | 7300 [R (int) = 0.0568] | |
| Max. and min. transmission | 1.0000 and 0.9225 | |
| Structure solution technique | direct methods | |
| Structure solution program | SHELXT 2014/5 (Sheldrick, 2014) | |
| Refinement method | Full-matrix least-squares on F2 | |
| Refinement program | SHELXL-2016/6 (Sheldrick, 2016) | |
| Function minimized | Σw (Fo2 - Fc2)2 | |
| Data/restraints/parameters | 7300/1/559 | |
| Goodness-of-fit on F2 | 1.034 | |
| Δ/σmax | 0.001 | |
| Final R indices | 5749 data; I > 2σ(I) | R1 = 0.0392, wR2 = 0.0928 |
| all data | R1 = 0.0584, wR2 = 0.1029 | |
| Weighting scheme | w = 1/[σ2(Fo2) + (0.0458P)2 + 10.9478P] where P = (Fo2 + 2Fc2)/3 |
|
| Absolute structure parameter | −0.009 (15) | |
| Largest diff. peak and hole | 2.878 and −0.918 eÅ−3 | |
| R.M.S. deviation from mean | 0.137 eÅ−3 | |
Table 3.
Atomic coordinates and equivalent isotropic atomic displacement parameters (Å2) for D8_1390_PFPyPhI. U (eq) is defined as one third of the trace of the orthogonalized Uij tensor.
| x/a | y/b | z/c | U (eq) | |
|---|---|---|---|---|
| I1 | 0.57328 (3) | 0.45589 (2) | 0.92494 (12) | 0.02996 (18) |
| I2 | 0.77564 (4) | 0.46501 (2) | 0.52911 (17) | 0.0435 (2) |
| I3 | 0.56985 (3) | 0.54613 (2) | 0.42247 (12) | 0.03046 (18) |
| I4 | 0.77216 (3) | 0.54987 (2) | 0.02299 (17) | 0.0400 (2) |
| F1 | 0.6935 (3) | 0.2367 (2) | 0.6209 (10) | 0.0373 (16) |
| F2 | 0.5454 (3) | 0.2084 (2) | 0.1314 (12) | 0.0384 (16) |
| F3 | 0.6689 (3) | 0.7766 (2) | 0.1299 (11) | 0.0443 (18) |
| F4 | 0.5219 (3) | 0.7947 (2) | 0.6569 (13) | 0.0477 (19) |
| O1 | 0.5822 (3) | 0.2758 (2) | 0.3963 (13) | 0.0259 (16) |
| O2 | 0.7308 (3) | 0.3016 (2) | 0.9043 (13) | 0.0272 (16) |
| O3 | 0.6013 (3) | 0.1890 (3) | 0.7198 (14) | 0.039 (2) |
| O4 | 0.5648 (3) | 0.7278 (2) | 0.9081 (14) | 0.0294 (16) |
| O5 | 0.7107 (3) | 0.7100 (2) | 0.3974 (13) | 0.0286 (16) |
| O6 | 0.5721 (3) | 0.8189 (3) | 0.2461 (15) | 0.045 (2) |
| N1 | 0.6573 (3) | 0.2874 (3) | 0.1526 (15) | 0.0232 (19) |
| N2 | 0.6388 (3) | 0.7205 (3) | 0.6532 (15) | 0.0239 (19) |
| C1 | 0.5781 (4) | 0.3963 (3) | 0.7419 (18) | 0.023 (2) |
| C2 | 0.5554 (4) | 0.3582 (3) | 0.8307 (17) | 0.022 (2) |
| C3 | 0.5593 (4) | 0.3186 (3) | 0.7111 (18) | 0.022 (2) |
| C4 | 0.5851 (4) | 0.3171 (3) | 0.502 (2) | 0.022 (2) |
| C5 | 0.6080 (4) | 0.3558 (3) | 0.4080 (18) | 0.023 (2) |
| C6 | 0.6045 (4) | 0.3951 (3) | 0.526 (2) | 0.023 (2) |
| C7 | 0.7624 (4) | 0.4101 (3) | 0.3158 (18) | 0.026 (2) |
| C8 | 0.7812 (4) | 0.3691 (4) | 0.3850 (19) | 0.032 (3) |
| C9 | 0.7701 (5) | 0.3323 (3) | 0.2490 (19) | 0.031 (3) |
| C10 | 0.7418 (4) | 0.3386 (3) | 0.045 (2) | 0.025 (2) |
| C11 | 0.7222 (4) | 0.3786 (3) | 0.9779 (18) | 0.029 (3) |
| C12 | 0.7332 (4) | 0.4156 (3) | 0.1121 (18) | 0.030 (3) |
| C13 | 0.6117 (4) | 0.2651 (3) | 0.2045 (18) | 0.024 (2) |
| C14 | 0.6839 (4) | 0.2779 (3) | 0.9639 (16) | 0.023 (2) |
| C15 | 0.6665 (4) | 0.2439 (4) | 0.8199 (18) | 0.027 (2) |
| C16 | 0.6202 (5) | 0.2196 (3) | 0.877 (2) | 0.030 (3) |
| C17 | 0.5924 (4) | 0.2306 (3) | 0.073 (2) | 0.027 (3) |
| C18 | 0.5939 (4) | 0.1451 (4) | 0.777 (2) | 0.030 (3) |
| C19 | 0.6181 (4) | 0.1259 (4) | 0.966 (2) | 0.041 (3) |
| C20 | 0.6110 (5) | 0.0809 (4) | 0.004 (3) | 0.041 (3) |
| C21 | 0.5812 (5) | 0.0545 (4) | 0.848 (3) | 0.052 (4) |
| C22 | 0.5580 (5) | 0.0749 (4) | 0.661 (3) | 0.050 (4) |
| C23 | 0.5641 (5) | 0.1201 (4) | 0.621 (2) | 0.040 (3) |
| C24 | 0.5695 (4) | 0.6063 (3) | 0.2409 (18) | 0.024 (2) |
| C25 | 0.5450 (4) | 0.6429 (3) | 0.3354 (18) | 0.024 (2) |
| C26 | 0.5452 (4) | 0.6831 (3) | 0.2201 (18) | 0.025 (2) |
| C27 | 0.5706 (4) | 0.6863 (3) | 0.010 (2) | 0.023 (2) |
| C28 | 0.5963 (4) | 0.6486 (3) | 0.913 (2) | 0.030 (2) |
| C29 | 0.5950 (4) | 0.6091 (3) | 0.030 (2) | 0.028 (2) |
| C30 | 0.7535 (4) | 0.6037 (4) | 0.8061 (19) | 0.029 (3) |
| C31 | 0.7249 (4) | 0.5958 (4) | 0.6057 (19) | 0.034 (3) |
| C32 | 0.7106 (4) | 0.6324 (3) | 0.4692 (18) | 0.030 (3) |
| C33 | 0.7251 (4) | 0.6739 (3) | 0.535 (2) | 0.029 (2) |
| C34 | 0.7532 (5) | 0.6814 (4) | 0.7389 (19) | 0.029 (3) |
| C35 | 0.7678 (4) | 0.6461 (3) | 0.8745 (18) | 0.028 (2) |
| C36 | 0.5915 (4) | 0.7407 (4) | 0.7151 (19) | 0.028 (2) |
| C37 | 0.6631 (4) | 0.7324 (3) | 0.4639 (17) | 0.028 (3) |
| C38 | 0.6432 (5) | 0.7665 (4) | 0.3287 (19) | 0.032 (3) |
| C39 | 0.5953 (4) | 0.7879 (4) | 0.393 (2) | 0.035 (3) |
| C40 | 0.5696 (5) | 0.7749 (4) | 0.589 (2) | 0.036 (3) |
| C41 | 0.5747 (4) | 0.8642 (4) | 0.295 (2) | 0.033 (3) |
| C42 | 0.6020 (5) | 0.8813 (4) | 0.480 (2) | 0.043 (3) |
| C43 | 0.6030 (5) | 0.9271 (4) | 0.507 (3) | 0.049 (3) |
| C44 | 0.5775 (6) | 0.9553 (5) | 0.358 (3) | 0.059 (5) |
| C45 | 0.5498 (6) | 0.9366 (4) | 0.168 (3) | 0.059 (4) |
| C46 | 0.5475 (5) | 0.8905 (4) | 0.137 (2) | 0.047 (3) |
Table 4.
Bond lengths (Å) for D8_1390_PFPyPhI.
| I1–C1 | 2.095 (9) | I1–C2 | 3.026 (10) |
| I1–C6 | 3.065 (11) | I1–I3 | 3.9919 (9) |
| I2–C7 | 2.099 (10) | I2–C8 | 3.015 (11) |
| I2–C12 | 3.041 (11) | I2–I4 | 3.8673 (12) |
| I3–C24 | 2.104 (10) | I3–C25 | 3.019 (10) |
| I3–C29 | 3.046 (12) | I4–C30 | 2.109 (11) |
| I4–C35 | 3.031 (11) | I4–C31 | 3.033 (12) |
| F1–C15 | 1.353 (11) | F2–C17 | 1.356 (12) |
| F3–C38 | 1.354 (13) | F4–C40 | 1.351 (13) |
| O1–C13 | 1.369 (12) | O1–C4 | 1.393 (11) |
| O2–C14 | 1.377 (12) | O2–C10 | 1.413 (13) |
| O3–C18 | 1.377 (13) | O3–C16 | 1.379 (13) |
| O4–C36 | 1.358 (13) | O4–C27 | 1.393 (12) |
| O5–C37 | 1.381 (13) | O5–C33 | 1.400 (14) |
| O6–C39 | 1.388 (13) | O6–C41 | 1.394 (14) |
| N1–C14 | 1.310 (13) | N1–C13 | 1.319 (13) |
| N2–C37 | 1.305 (13) | N2–C36 | 1.337 (14) |
| C1–C2 | 1.374 (14) | C1–C6 | 1.416 (16) |
| C2–C3 | 1.387 (14) | C2–H2 | 0.95 |
| C3–C4 | 1.375 (15) | C3–H3 | 0.95 |
| C4–C5 | 1.402 (14) | C5–C6 | 1.375 (14) |
| C5–H5 | 0.95 | C6–H6 | 0.95 |
| C7–C8 | 1.377 (14) | C7–C12 | 1.396 (15) |
| C8–C9 | 1.390 (16) | C8–H8 | 0.95 |
| C9–C10 | 1.388 (17) | C9–H9 | 0.95 |
| C10–C11 | 1.355 (13) | C11–C12 | 1.389 (14) |
| C11–H11 | 0.95 | C12–H12 | 0.95 |
| C13–C17 | 1.372 (14) | C14–C15 | 1.392 (14) |
| C15–C16 | 1.372 (16) | C16–C17 | 1.374 (15) |
| C18–C19 | 1.379 (16) | C18–C23 | 1.384 (16) |
| C19–C20 | 1.383 (15) | C19–H19 | 0.95 |
| C20–C21 | 1.406 (19) | C20–H20 | 0.95 |
| C21–C22 | 1.38 (2) | C21–H21 | 0.95 |
| C22–C23 | 1.388 (17) | C22–H22 | 0.95 |
| C23–H23 | 0.95 | C24–C25 | 1.365 (14) |
| C24–C29 | 1.385 (16) | C25–C26 | 1.388 (14) |
| C25–H25 | 0.95 | C26–C27 | 1.377 (16) |
| C26–H26 | 0.95 | C27–C28 | 1.413 (14) |
| C28–C29 | 1.372 (14) | C28–H28 | 0.95 |
| C29–H29 | 0.95 | C30–C31 | 1.382 (15) |
| C30–C35 | 1.385 (15) | C31–C32 | 1.407 (15) |
| C31–H31 | 0.95 | C32–C33 | 1.353 (14) |
| C32–H32 | 0.95 | C33–C34 | 1.392 (18) |
| C34–C35 | 1.374 (15) | C34–H34 | 0.95 |
| C35–H35 | 0.95 | C36–C40 | 1.372 (15) |
| C37–C38 | 1.384 (15) | C38–C39 | 1.367 (16) |
| C39–C40 | 1.366 (16) | C41–C42 | 1.370 (17) |
| C41–C46 | 1.384 (16) | C42–C43 | 1.388 (16) |
| C42–H42 | 0.95 | C43–C44 | 1.36 (2) |
| C43–H43 | 0.95 | C44–C45 | 1.42 (2) |
| C44–H44 | 0.95 | C45–C46 | 1.404 (17) |
| C45–H45 | 0.95 | C46–H46 | 0.95 |
Table 5.
Bond angles (°) for D8_1390_PFPyPhI.
| C1–I1–C2 | 23.2 (4) | C1–I1–C6 | 23.5 (3) |
| C2–I1–C6 | 46.6 (3) | C1–I1–I3 | 163.8 (3) |
| C2–I1–I3 | 142.52 (19) | C6–I1–I3 | 166.18 (17) |
| C7–I2–C8 | 23.6 (4) | C7–I2–C12 | 23.5 (4) |
| C8–I2–C12 | 47.1 (3) | C7–I2–I4 | 164.9 (3) |
| C8–I2–I4 | 147.7 (2) | C12–I2–I4 | 156.99 (19) |
| C24–I3–C25 | 23.2 (4) | C24–I3–C29 | 23.1 (4) |
| C25–I3–C29 | 46.3 (3) | C24–I3–I1 | 102.5 (3) |
| C25–I3–I1 | 122.5 (2) | C29–I3–I1 | 82.3 (2) |
| C30–I4–C35 | 23.6 (4) | C30–I4–C31 | 23.4 (4) |
| C35–I4–C31 | 47.0 (3) | C30–I4–I2 | 93.4 (3) |
| C35–I4–I2 | 114.70 (19) | C31–I4–I2 | 72.8 (2) |
| C13–O1–C4 | 123.5 (8) | C14–O2–C10 | 114.4 (7) |
| C18–O3–C16 | 121.5 (9) | C36–O4–C27 | 124.7 (8) |
| C37–O5–C33 | 114.8 (8) | C39–O6–C41 | 120.9 (9) |
| C14–N1–C13 | 119.1 (9) | C37–N2–C36 | 119.0 (10) |
| C2–C1–C6 | 119.6 (9) | C2–C1–I1 | 120.0 (8) |
| C6–C1–I1 | 120.4 (7) | C1–C2–C3 | 120.0 (10) |
| C1–C2–I1 | 36.9 (5) | C3–C2–I1 | 156.8 (7) |
| C1–C2–H2 | 120.0 | C3–C2–H2 | 120.0 |
| I1–C2–H2 | 83.2 | C4–C3–C2 | 120.7 (9) |
| C4–C3–H3 | 119.7 | C2–C3–H3 | 119.7 |
| C3–C4–O1 | 113.8 (9) | C3–C4–C5 | 120.0 (9) |
| O1–C4–C5 | 126.0 (10) | C6–C5–C4 | 119.5 (10) |
| C6–C5–H5 | 120.2 | C4–C5–H5 | 120.2 |
| C5–C6–C1 | 120.1 (9) | C5–C6–I1 | 156.2 (8) |
| C1–C6–I1 | 36.1 (5) | C5–C6–H6 | 119.9 |
| C1–C6–H6 | 119.9 | I1–C6–H6 | 83.8 |
| C8–C7–C12 | 121.5 (10) | C8–C7–I2 | 118.9 (8) |
| C12–C7–I2 | 119.6 (8) | C7–C8–C9 | 119.0 (10) |
| C7–C8–I2 | 37.6 (6) | C9–C8–I2 | 156.4 (8) |
| C7–C8–H8 | 120.5 | C9–C8–H8 | 120.5 |
| I2–C8–H8 | 83.0 | C10–C9–C8 | 118.7 (9) |
| C10–C9–H9 | 120.7 | C8–C9–H9 | 120.7 |
| C11–C10–C9 | 122.8 (11) | C11–C10–O2 | 117.8 (11) |
| C9–C10–O2 | 119.3 (9) | C10–C11–C12 | 118.8 (10) |
| C10–C11–H11 | 120.6 | C12–C11–H11 | 120.6 |
| C11–C12–C7 | 119.1 (9) | C11–C12–I2 | 155.9 (7) |
| C7–C12–I2 | 36.9 (5) | C11–C12–H12 | 120.4 |
| C7–C12–H12 | 120.4 | I2–C12–H12 | 83.6 |
| N1–C13–O1 | 119.8 (9) | N1–C13–C17 | 122.4 (10) |
| O1–C13–C17 | 117.8 (9) | N1–C14–O2 | 119.9 (9) |
| N1–C14–C15 | 122.0 (10) | O2–C14–C15 | 118.1 (9) |
| F1–C15–C16 | 120.6 (10) | F1–C15–C14 | 120.0 (10) |
| C16–C15–C14 | 119.2 (10) | C15–C16–C17 | 117.7 (10) |
| C15–C16–O3 | 117.5 (11) | C17–C16–O3 | 124.4 (10) |
| F2–C17–C13 | 120.9 (10) | F2–C17–C16 | 119.6 (9) |
| C13–C17–C16 | 119.5 (10) | O3–C18–C19 | 123.0 (10) |
| O3–C18–C23 | 115.3 (11) | C19–C18–C23 | 121.5 (11) |
| C18–C19–C20 | 119.1 (12) | C18–C19–H19 | 120.4 |
| C20–C19–H19 | 120.4 | C19–C20–C21 | 120.9 (13) |
| C19–C20–H20 | 119.5 | C21–C20–H20 | 119.5 |
| C22–C21–C20 | 117.9 (12) | C22–C21–H21 | 121.0 |
| C20–C21–H21 | 121.0 | C21–C22–C23 | 122.1 (12) |
| C21–C22–H22 | 118.9 | C23–C22–H22 | 118.9 |
| C18–C23–C22 | 118.3 (12) | C18–C23–H23 | 120.8 |
| C22–C23–H23 | 120.8 | C25–C24–C29 | 120.3 (10) |
| C25–C24–I3 | 119.4 (8) | C29–C24–I3 | 120.2 (7) |
| C24–C25–C26 | 120.3 (10) | C24–C25–I3 | 37.4 (5) |
| C26–C25–I3 | 157.7 (8) | C24–C25–H25 | 119.8 |
| C26–C25–H25 | 119.8 | I3–C25–H25 | 82.5 |
| C27–C26–C25 | 119.9 (10) | C27–C26–H26 | 120.0 |
| C25–C26–H26 | 120.0 | C26–C27–O4 | 113.9 (9) |
| C26–C27–C28 | 119.7 (10) | O4–C27–C28 | 126.3 (10) |
| C29–C28–C27 | 119.2 (10) | C29–C28–H28 | 120.4 |
| C27–C28–H28 | 120.4 | C28–C29–C24 | 120.5 (10) |
| C28–C29–I3 | 157.1 (8) | C24–C29–I3 | 36.6 (5) |
| C28–C29–H29 | 119.7 | C24–C29–H29 | 119.7 |
| I3–C29–H29 | 83.1 | C31–C30–C35 | 121.9 (11) |
| C31–C30–I4 | 119.1 (8) | C35–C30–I4 | 118.8 (8) |
| C30–C31–C32 | 118.1 (10) | C30–C31–I4 | 37.4 (6) |
| C32–C31–I4 | 155.4 (7) | C30–C31–H31 | 121.0 |
| C32–C31–H31 | 121.0 | I4–C31–H31 | 83.6 |
| C33–C32–C31 | 120.0 (10) | C33–C32–H32 | 120.0 |
| C31–C32–H32 | 120.0 | C32–C33–C34 | 121.4 (11) |
| C32–C33–O5 | 119.3 (11) | C34–C33–O5 | 119.3 (9) |
| C35–C34–C33 | 119.7 (10) | C35–C34–H34 | 120.2 |
| C33–C34–H34 | 120.2 | C34–C35–C30 | 119.0 (10) |
| C34–C35–I4 | 156.4 (8) | C30–C35–I4 | 37.6 (6) |
| C34–C35–H35 | 120.5 | C30–C35–H35 | 120.5 |
| I4–C35–H35 | 83.0 | N2–C36–O4 | 119.8 (9) |
| N2–C36–C40 | 121.3 (10) | O4–C36–C40 | 119.0 (10) |
| N2–C37–O5 | 118.4 (9) | N2–C37–C38 | 122.6 (11) |
| O5–C37–C38 | 119.1 (9) | F3–C38–C39 | 120.8 (10) |
| F3–C38–C37 | 120.3 (11) | C39–C38–C37 | 118.8 (10) |
| C40–C39–C38 | 118.4 (11) | C40–C39–O6 | 122.5 (11) |
| C38–C39–O6 | 118.9 (11) | F4–C40–C39 | 120.2 (11) |
| F4–C40–C36 | 119.9 (11) | C39–C40–C36 | 119.9 (11) |
| C42–C41–C46 | 122.7 (12) | C42–C41–O6 | 123.7 (10) |
| C46–C41–O6 | 113.6 (11) | C41–C42–C43 | 118.1 (12) |
| C41–C42–H42 | 120.9 | C43–C42–H42 | 120.9 |
| C44–C43–C42 | 122.8 (15) | C44–C43–H43 | 118.6 |
| C42–C43–H43 | 118.6 | C43–C44–C45 | 117.9 (13) |
| C43–C44–H44 | 121.0 | C45–C44–H44 | 121.0 |
| C46–C45–C44 | 120.8 (12) | C46–C45–H45 | 119.6 |
| C44–C45–H45 | 119.6 | C41–C46–C45 | 117.7 (13) |
| C41–C46–H46 | 121.2 | C45–C46–H46 | 121.2 |
Table 6.
Anisotropic atomic displacement parameters (Å2) for D8_1390_PFPyPhI. The anisotropic atomic displacement factor exponent takes the form: 2π2 [h2 a*2 U11 + ... + 2 h k a* b* U12].
| U11 | U22 | U33 | U23 | U13 | U12 | |
|---|---|---|---|---|---|---|
| I1 | 0.0390 (4) | 0.0297 (3) | 0.0212 (4) | −0.0053 (4) | 0.0019 (4) | 0.0059 (3) |
| I2 | 0.0665 (5) | 0.0345 (4) | 0.0295 (4) | 0.0000 (5) | −0.0012 (5) | −0.0088 (4) |
| I3 | 0.0388 (4) | 0.0310 (3) | 0.0216 (4) | 0.0018 (4) | 0.0017 (4) | −0.0062 (3) |
| I4 | 0.0577 (5) | 0.0340 (4) | 0.0282 (4) | −0.0037 (5) | 0.0000 (4) | 0.0005 (3) |
| F1 | 0.044 (4) | 0.052 (4) | 0.016 (3) | −0.006 (3) | −0.001 (3) | 0.020 (3) |
| F2 | 0.036 (4) | 0.040 (4) | 0.039 (4) | −0.012 (3) | 0.004 (3) | −0.007 (3) |
| F3 | 0.041 (4) | 0.067 (5) | 0.025 (4) | 0.017 (3) | −0.005 (3) | −0.020 (3) |
| F4 | 0.036 (4) | 0.059 (4) | 0.048 (5) | 0.013 (4) | −0.003 (4) | 0.016 (3) |
| O1 | 0.032 (4) | 0.027 (3) | 0.019 (4) | −0.005 (3) | 0.005 (3) | 0.001 (3) |
| O2 | 0.022 (4) | 0.037 (4) | 0.022 (4) | −0.002 (4) | 0.007 (4) | 0.007 (3) |
| O3 | 0.049 (5) | 0.045 (5) | 0.024 (5) | −0.011 (4) | −0.011 (4) | 0.006 (4) |
| O4 | 0.026 (4) | 0.038 (4) | 0.025 (4) | 0.009 (4) | 0.007 (4) | 0.004 (3) |
| O5 | 0.029 (4) | 0.036 (4) | 0.021 (4) | 0.007 (3) | 0.002 (3) | −0.012 (3) |
| O6 | 0.053 (6) | 0.047 (5) | 0.035 (5) | 0.010 (4) | −0.023 (4) | −0.006 (4) |
| N1 | 0.025 (5) | 0.027 (5) | 0.018 (5) | −0.002 (4) | 0.000 (4) | 0.008 (4) |
| N2 | 0.021 (5) | 0.035 (5) | 0.016 (5) | 0.001 (4) | −0.004 (4) | −0.009 (4) |
| C1 | 0.027 (6) | 0.027 (5) | 0.015 (6) | −0.005 (4) | 0.000 (4) | 0.010 (4) |
| C2 | 0.028 (5) | 0.028 (5) | 0.010 (5) | 0.004 (4) | 0.002 (4) | 0.011 (4) |
| C3 | 0.022 (5) | 0.026 (5) | 0.019 (6) | 0.005 (4) | 0.004 (4) | 0.003 (4) |
| C4 | 0.020 (5) | 0.027 (5) | 0.020 (6) | −0.002 (5) | 0.002 (4) | 0.008 (4) |
| C5 | 0.028 (5) | 0.033 (5) | 0.009 (5) | −0.001 (5) | 0.001 (5) | 0.003 (4) |
| C6 | 0.023 (5) | 0.026 (5) | 0.021 (5) | 0.005 (6) | 0.003 (5) | 0.000 (4) |
| C7 | 0.032 (6) | 0.026 (6) | 0.022 (6) | −0.001 (4) | 0.003 (5) | −0.005 (5) |
| C8 | 0.029 (6) | 0.047 (6) | 0.020 (7) | 0.009 (5) | 0.000 (5) | 0.010 (5) |
| C9 | 0.042 (7) | 0.025 (6) | 0.026 (6) | 0.006 (5) | 0.007 (5) | 0.018 (5) |
| C10 | 0.024 (5) | 0.030 (5) | 0.023 (6) | 0.008 (6) | 0.011 (5) | 0.000 (4) |
| C11 | 0.028 (6) | 0.035 (6) | 0.022 (8) | 0.008 (4) | 0.001 (4) | 0.002 (4) |
| C12 | 0.029 (6) | 0.030 (6) | 0.031 (7) | 0.011 (4) | 0.004 (5) | 0.004 (5) |
| C13 | 0.019 (5) | 0.034 (6) | 0.019 (6) | −0.003 (4) | 0.002 (4) | 0.008 (5) |
| C14 | 0.022 (5) | 0.031 (5) | 0.015 (6) | 0.001 (4) | 0.002 (4) | 0.012 (4) |
| C15 | 0.036 (6) | 0.035 (6) | 0.010 (5) | −0.002 (4) | 0.000 (5) | 0.020 (5) |
| C16 | 0.035 (6) | 0.026 (5) | 0.029 (7) | −0.010 (5) | −0.008 (5) | 0.007 (5) |
| C17 | 0.025 (6) | 0.027 (5) | 0.029 (8) | −0.003 (5) | −0.004 (5) | −0.001 (4) |
| C18 | 0.026 (6) | 0.030 (6) | 0.034 (7) | −0.009 (5) | −0.003 (5) | 0.005 (5) |
| C19 | 0.026 (6) | 0.047 (7) | 0.049 (10) | −0.009 (6) | −0.001 (5) | 0.003 (5) |
| C20 | 0.035 (6) | 0.046 (7) | 0.043 (8) | 0.000 (7) | −0.002 (6) | 0.004 (5) |
| C21 | 0.039 (7) | 0.034 (7) | 0.084 (13) | −0.013 (7) | 0.010 (7) | −0.010 (6) |
| C22 | 0.047 (8) | 0.047 (8) | 0.056 (10) | −0.023 (7) | −0.006 (7) | −0.010 (6) |
| C23 | 0.034 (7) | 0.051 (8) | 0.034 (8) | −0.011 (6) | −0.008 (5) | 0.007 (6) |
| C24 | 0.024 (6) | 0.032 (6) | 0.016 (6) | 0.003 (4) | −0.001 (4) | −0.003 (4) |
| C25 | 0.019 (5) | 0.035 (6) | 0.018 (6) | −0.003 (4) | −0.002 (4) | −0.002 (4) |
| C26 | 0.023 (5) | 0.035 (6) | 0.017 (6) | −0.001 (4) | −0.005 (4) | 0.003 (5) |
| C27 | 0.015 (5) | 0.031 (5) | 0.024 (6) | −0.002 (5) | 0.004 (5) | −0.003 (4) |
| C28 | 0.032 (6) | 0.044 (6) | 0.015 (6) | 0.005 (5) | 0.004 (6) | −0.007 (5) |
| C29 | 0.033 (6) | 0.033 (5) | 0.019 (5) | −0.002 (6) | −0.004 (6) | −0.005 (4) |
| C30 | 0.027 (6) | 0.039 (6) | 0.021 (6) | −0.001 (5) | 0.003 (5) | 0.000 (5) |
| C31 | 0.033 (6) | 0.040 (6) | 0.030 (7) | −0.016 (5) | 0.002 (5) | −0.011 (5) |
| C32 | 0.023 (5) | 0.047 (6) | 0.020 (7) | −0.013 (5) | −0.002 (4) | −0.009 (5) |
| C33 | 0.023 (5) | 0.042 (6) | 0.022 (5) | −0.005 (7) | 0.014 (5) | −0.011 (4) |
| C34 | 0.035 (6) | 0.032 (6) | 0.021 (6) | 0.000 (5) | 0.003 (5) | −0.016 (5) |
| C35 | 0.028 (6) | 0.040 (6) | 0.016 (6) | −0.009 (5) | 0.002 (4) | −0.011 (5) |
| C36 | 0.026 (6) | 0.037 (6) | 0.021 (6) | 0.011 (5) | −0.003 (5) | −0.008 (5) |
| C37 | 0.026 (6) | 0.040 (6) | 0.018 (7) | 0.002 (4) | −0.002 (4) | −0.014 (5) |
| C38 | 0.039 (7) | 0.043 (7) | 0.016 (6) | 0.011 (5) | −0.008 (5) | −0.017 (5) |
| C39 | 0.028 (6) | 0.045 (7) | 0.032 (8) | 0.019 (6) | −0.013 (6) | −0.009 (5) |
| C40 | 0.036 (7) | 0.042 (7) | 0.029 (8) | 0.003 (5) | −0.008 (5) | 0.002 (5) |
| C41 | 0.026 (6) | 0.038 (6) | 0.034 (8) | 0.013 (5) | −0.001 (5) | −0.003 (5) |
| C42 | 0.035 (7) | 0.057 (7) | 0.038 (9) | 0.020 (6) | −0.011 (5) | −0.001 (5) |
| C43 | 0.030 (6) | 0.050 (7) | 0.067 (10) | −0.008 (8) | −0.002 (7) | −0.003 (5) |
| C44 | 0.052 (9) | 0.048 (8) | 0.078 (14) | 0.013 (7) | −0.006 (8) | 0.011 (7) |
| C45 | 0.070 (10) | 0.041 (8) | 0.065 (11) | 0.023 (7) | −0.012 (8) | 0.002 (7) |
| C46 | 0.037 (7) | 0.074 (10) | 0.032 (7) | 0.017 (7) | −0.006 (6) | −0.011 (7) |
Table 7.
Hydrogen atomic coordinates and isotropic atomic displacement parameters (Å2) for D8_1390_PFPyPhI.
| x/a | y/b | z/c | U (eq) | |
|---|---|---|---|---|
| H2 | 0.5370 | 0.3590 | 0.9741 | 0.027 |
| H3 | 0.5439 | 0.2923 | 0.7741 | 0.027 |
| H5 | 0.6258 | 0.3549 | 0.2635 | 0.028 |
| H6 | 0.6198 | 0.4214 | 0.4632 | 0.028 |
| H8 | 0.8013 | 0.3659 | 0.5235 | 0.039 |
| H9 | 0.7818 | 0.3035 | 0.2946 | 0.037 |
| H11 | 0.7012 | 0.3814 | −0.1587 | 0.034 |
| H12 | 0.7210 | 0.4442 | 0.0657 | 0.035 |
| H19 | 0.6394 | 0.1433 | 0.0689 | 0.049 |
| H20 | 0.6264 | 0.0678 | 0.1363 | 0.05 |
| H21 | 0.5772 | 0.0235 | −0.1283 | 0.063 |
| H22 | 0.5371 | 0.0576 | −0.4437 | 0.06 |
| H23 | 0.5483 | 0.1335 | −0.5106 | 0.048 |
| H25 | 0.5278 | 0.6408 | 1.4807 | 0.029 |
| H26 | 0.5279 | 0.7084 | 1.2859 | 0.03 |
| H28 | 0.6143 | 0.6505 | 0.7695 | 0.036 |
| H29 | 0.6117 | 0.5835 | 0.9649 | 0.034 |
| H31 | 0.7152 | 0.5664 | 0.5615 | 0.041 |
| H32 | 0.6909 | 0.6281 | 0.3307 | 0.036 |
| H34 | 0.7623 | 0.7108 | 0.7840 | 0.035 |
| H35 | 0.7875 | 0.6508 | 1.0129 | 0.034 |
| H42 | 0.6197 | 0.8624 | 0.5878 | 0.052 |
| H43 | 0.6222 | 0.9393 | 0.6334 | 0.059 |
| H44 | 0.5783 | 0.9865 | 0.3813 | 0.071 |
| H45 | 0.5325 | 0.9556 | 0.0591 | 0.071 |
| H46 | 0.5280 | 0.8777 | 0.0123 | 0.057 |
2. Experimental design, materials, and methods
Compound 3 was successfully crystallized through slow evaporation of an ethanol solution. Single crystal X-ray diffraction data were obtained at 100 K using a Bruker D8 Venture diffractometer equipped with Mo Kα radiation and a Photon 100 detector. Structure solution and refinement were performed using SHELXT 2014/5 and SHELXL 2016/6. All non-hydrogen atoms were refined anisotropically, while hydrogen atoms were placed geometrically and refined using riding models.
The structure was test-refined in Ccc2, with that model consisting of one unique molecule having highly correlated thermal ellipsoids, some of which should be split, suggesting disorder or lower symmetry than Ccc2. Furthermore, there are 6631 systematic absence violations (many for hkl, h + k = odd) in the Ccc2 model, versus 0 in the Pnn2 model. Thus, the current model in Pnn2 would seem to better fit the true symmetry of the system, having two unique molecules in the asymmetric unit with well-behaved ADPs.
CCDC contains the supplementary crystallographic data for this paper. The CCDC reference number is 1947916. These data can be viewed free of charge via http://www.ccdc.cam.ac.uk/cont/retrieving.html or from the CCDC, 12 Union Road, Cambridge CB21EZ, UK. Fax: +44 1223 336033. E-mail: deposit@ccdc.cam.ac.uk.
Acknowledgments
STI acknowledge financial support from the Defense Threat Reduction Agency (DTRA) and the Air Force Office of Scientific Research (AFOSR).
Conflict of Interest
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.


