The centrosymmetric binuclear complex features a tetrahedral AgI centre within a S4 donor set. The three-dimensional molecular packing is sustained by amine-N—H⋯S(thione), N—H⋯N(triazolyl) and N—H⋯N(thiocyanate) hydrogen bonds.
Keywords: crystal structure; AgI complex; hydrogen bonding; 1H-1,2,4-triazole-5(4-H–thione); thiocyanate
Abstract
The complete molecule of the binuclear title complex, bis[μ-1H-1,2,4-triazole-5(4H)-thione-κ2 S:S]bis{(thiocyanato-κS)[1H-1,2,4-triazole-5(4H)-thione-κS]silver(I)}, [Ag2(SCN)2(C2H3N3S)4], is generated by crystallographic inversion symmetry. The independent triazole-3-thione ligands employ the exocyclic-S atoms exclusively in coordination. One acts as a terminal S-ligand and the other in a bidentate (μ2) bridging mode to provide a link between two AgI centres. Each AgI atom is also coordinated by a terminal S-bound thiocyanate ligand, resulting in a distorted AgS4 tetrahedral coordination geometry. An intramolecular N—H⋯S(thiocyanate) hydrogen bond is noted. In the crystal, amine-N—H⋯S(thione), N—H⋯N(triazolyl) and N—H⋯N(thiocyanate) hydrogen bonds give rise to a three-dimensional architecture. The packing is consolidated by triazolyl-C—H⋯S(thiocyanate), triazolyl-C—H⋯N(thiocyanate) and S⋯S [3.2463 (9) Å] interactions as well as face-to-face π–π stacking between the independent triazolyl rings [inter-centroid separation = 3.4444 (15) Å]. An analysis of the calculated Hirshfeld surfaces shows the three major contributors are due to N⋯H/H⋯N, S⋯H/H⋯S and C⋯H/H⋯C contacts, at 35.8, 19.4 and 12.7%, respectively; H⋯H contacts contribute only 7.6% to the overall surface.
Chemical context
The title binuclear AgI complex, (I), containing 1H-1,2,4-triazole-5(4H-thione) and thiocyanate ligands has been synthesized and its crystal and molecular structures determined as part of our on-going studies in this area (Kodcharat et al., 2013 ▸). Interest in the 1,2,4-triazole-based heterocyclic thione derives from the various medical applications and extensive biological activity exhibited by Schiff base molecules derived from 1,2,4-triazoles. For example, these molecules are known for their anti-fungal, anti-bacterial, anti-tumour, anti-convulsant, anti-inflammatory and analgesic properties (Al-Soud et al., 2003 ▸; Walczak et al., 2004 ▸; Almasirad et al., 2004 ▸; Amir & Shikha, 2004 ▸; Turan-Zitouni et al., 2005 ▸). In addition, the synthesis and biological activities of coordination complexes of these molecules continue to attract significant attention as coordination often enhances the biological activity of the organic molecules (Dharmaraj et al., 2001 ▸; Singh et al., 2006 ▸; Altundas et al., 2010 ▸; Amer et al., 2013 ▸; Bheeter et al., 2016 ▸).
1H-1,2,4-Triazole-5(4H-thione), the heterocyclic ligand in (I) and hereafter referred to as HtrzSH, has attracted relatively little attention in the literature although recently the anti-cancer potential of derivatives of this were described (Büyükekşi et al., 2018 ▸). The crystallographic study of (I) described herein is complemented by an analysis of the calculated HOMO and LUMO and an analysis of the calculated Hirshfeld surfaces and energy frameworks.
Structural commentary
The binuclear complex, [Ag(HtrzSH)2(SCN)]2 (I), Fig. 1 ▸, crystallizes in the monoclinic space group P21/n and is disposed about a crystallographic centre of inversion. The HtrzSH molecules only employ their exocyclic thione-sulfur atoms in coordination, there being no Ag⋯N contacts of note. Each AgI atom is coordinated by a terminally bound HtrzSH molecule and by two thione-sulfur atoms derived from two μ2-bridging HtrzSH molecules. The coordination of each AgI atom is completed by a terminal, S-bound thiocyanate anion. The geometry around the silver centre defined by the S4 donor set is distorted tetrahedral with the S—Ag—S bond angles spanning about 25°, i.e. from a narrow 91.60 (2)° for S1—Ag—S1i, being subtended by the bridging S1 atoms, to a wide 127.43 (2)° for S2—Ag—S3; symmetry operation (i): 1 − x, 1 − y, 1 − z. The Ag2S2 core has the shape of a distorted rhombus as the Ag—S1 bond length of 2.5596 (7) Å is significantly shorter than the Ag—S1i bond of 2.8188 (7) Å. The Ag—S bond lengths fall in two distinct classes, with the Ag—S1b and Ag—St (b = bridging, t = thiocyanate) bond lengths being similar and shorter than Ag—S1i b (Table 1 ▸). Despite the different modes of coordination of the thione-S atoms, the C1—S1 and C3—S2 bond lengths are indistinguishable at 1.698 (3) Å. Each of the C1—S1 and C3—S2 bond lengths in (I) are marginally longer than 1.6836 (19) Å found in the structure of the free molecule (Büyükekşi et al., 2018 ▸). This small difference is reflected in the observation that no significant differences are evident in bond lengths within the five-membered rings in (I) and those in the uncomplexed molecule (Büyükekşi et al., 2018 ▸).
Figure 1.
The molecular structure of (I) showing displacement ellipsoids at the 70% probability level. The unlabelled atoms are generated by the symmetry operation 1 − x, 1 − y, 1 − z. The dashed lines represent intramolecular amine-N—H⋯S(thiocyanato) hydrogen bonds.
Table 1. Selected geometric parameters (Å, °).
| Ag—S1 | 2.5596 (7) | C1—S1 | 1.698 (3) |
| Ag—S2 | 2.5103 (6) | C3—S2 | 1.698 (3) |
| Ag—S3 | 2.5374 (7) | C5—S3 | 1.660 (3) |
| Ag—S1i | 2.8188 (7) | ||
| S1—Ag—S2 | 112.49 (2) | S2—Ag—S3 | 127.43 (2) |
| S1—Ag—S3 | 114.64 (2) | S2—Ag—S1i | 99.56 (2) |
| S1—Ag—S1i | 91.60 (2) | S3—Ag—S1i | 101.08 (2) |
Symmetry code: (i)
.
The five-membered rings lie prime to either side of the Ag2S2 core, with the dihedral angles between the core and the N1- and N4-rings being 88.99 (11) and 85.16 (11)°, respectively. The independent rings are close to being co-planar, exhibiting a dihedral angle of 8.38 (16)°. Finally, the N1-amine is orientated to be in close proximity to the S3-thiocyanato atom, enabling the formation of an intramolecular amine-N—H⋯S(thiocyanato) hydrogen bond (Table 2 ▸). While the N4-amine is similarly oriented, the H⋯S separation of 3.31 Å is not indicative of a significant interaction.
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1N⋯S3 | 0.88 (1) | 2.72 (2) | 3.555 (2) | 161 (3) |
| N1—H1N⋯N5ii | 0.88 (3) | 2.57 (4) | 3.023 (3) | 113 |
| N3—H3N⋯S2iii | 0.88 (1) | 2.56 (2) | 3.345 (2) | 150 (3) |
| N4—H4N⋯N2iv | 0.80 (4) | 2.38 (4) | 2.900 (3) | 123 (3) |
| N6—H6N⋯N7v | 0.88 (1) | 2.03 (1) | 2.877 (3) | 163 (3) |
| C2—H2⋯S3ii | 0.89 (4) | 2.87 (4) | 3.504 (3) | 129 (3) |
| C2—H2⋯N7vi | 0.89 (4) | 2.66 (3) | 3.184 (4) | 118 (3) |
| C4—H4⋯N7vii | 0.91 (4) | 2.58 (4) | 3.306 (4) | 137 (3) |
Symmetry codes: (ii)
; (iii)
; (iv)
; (v)
; (vi)
; (vii)
.
Supramolecular features
The crystal of (I) consists of a three-dimensional network of hydrogen bonds and other non-covalent contacts as summarized in Table 2 ▸. The second amine-N—H atom of the S1-thione molecule [the first is engaged in an intramolecular N—H⋯S(thiocyanate) hydrogen bond and a second, weaker N—H⋯N5(triazolyl) interaction] forms a hydrogen bond to the thione-S2 atom. By contrast, the amine-N—H atoms of the S2-thione molecule form N—H⋯N(triazolyl) and N—H⋯N(thiocyanate) hydrogen bonds. The hydrogen bonds combine to sustain a three-dimensional architecture as shown in Fig. 2 ▸. Further stability to the molecular packing is provided by triazolyl-C—H⋯S(thiocyanate) and triazolyl-C—H⋯N(thiocyanate) interactions along with face-to-face π–π stacking (Fig. 3 ▸). The latter occur between the independent triazolyl rings [inter-centroid separation: (N1–N3,C1,C2)⋯(N4–N6,C3,C4)ii = 3.4444 (15) Å and angle of inclination = 6.81 (16)° for (ii)
− x,
+ y,
− z].
Figure 2.
A view of the unit-cell contents of (I) in projection down the a axis, with N—H⋯S and N—H⋯N hydrogen bonds shown as orange and blue dashed lines, respectively.
Figure 3.
The face-to-face π–π stacking of (I).
Analysis of the Hirshfeld surfaces
The Hirshfeld surface analysis (McKinnon et al., 2004 ▸; Tan et al., 2019 ▸) of (I) was performed using Crystal Explorer 17 (Turner et al., 2017 ▸) to give further insight into the important intermolecular contacts normalized by van der Waals radii through a red–white–blue surface colour scheme where these colours denote the close contacts shorter than, equal to and longer than the sun of the respective van der Waals radii.
As seen in Fig. 4 ▸(a) of the Hirshfeld surface plotted over d norm for (I), the red regions of the surface represent close contacts corresponding to the N—H⋯S and N—H⋯N hydrogen-bonding interactions mentioned above. An additional feature, i.e. S⋯S contacts, are noted. The closest of these, i.e. S1⋯S1iii = 3.2463 (9) Å [symmetry operation: (iii) 2 − x, 1 − y, 1 − z], link the binuclear molecules into chains along the a-axis direction. On the Hirshfeld surface mapped over electrostatic potential (DFT 3-21G) shown in Fig. 4 ▸(b), the faint-red and light-blue regions correspond to negative and positive electrostatic potential, respectively,
Figure 4.
A view of the Hirshfeld surface for (I) mapped over (a) d norm and (b) the electrostatic potential; the red and blue regions represent negative and positive electrostatic potentials, respectively.
The full and delineated (H⋯H, N⋯H/H⋯N, S⋯S, S⋯H/H⋯S and C⋯H/H⋯C) two-dimensional fingerprint plots are shown in Fig. 5 ▸(a)–(f), respectively. The N⋯H/H⋯N contacts, at 35.8%, are the major contributor to the Hirshfeld surface. The S⋯H/H⋯S contacts (19.4%) also make a significant contribution. Other significant contributions come from the C⋯H/H⋯C (12.7%) and S⋯S (8.3%) contacts with H⋯H contacts, occurring at distances beyond the sum of the van der Waals radii, contributing only 7.6%. The next most significant contribution is made by N⋯C/C⋯N contacts (6.7%) arising in the main from the π–π stacking interactions between triazolyl rings.
Figure 5.
(a) A comparison of the full two-dimensional fingerprint plot for (I) and those delineated into (b) H⋯H, (c) N⋯H/H⋯N, (d) S⋯S, (e) S⋯H/H⋯S and (f) C⋯H/H⋯C contacts.
The energy frameworks were simulated (Turner et al., 2017 ▸) in order to analyse the specific intermolecular interactions identified above for each molecule-to-molecule contact. This was achieved by summing up four different energy components (Turner et al., 2017 ▸) for each pair of molecules, i.e. electrostatic (E ele), polarization (E pol), dispersion (E dis) and exchange–repulsion (E rep); these were obtained using the wave function calculated at the HF/3-21G level of theory. The results are summarized in Table 3 ▸. The greatest energy of attraction between molecules amounts to 138.4 kJ mol−1, having a major electrostatic contribution (−142.4 kJ mol−1), and is associated with the following interatomic contacts: C2—H2⋯N7, C4—H4⋯N7 and π–π stacking of between triazole rings. The next most significant contribution, with a total energy of −125.0 kJ mol−1, arises from conventional hydrogen bonds, i.e. N1—H1N⋯N5, N4—H4N⋯N2 and N6—H6N⋯N7 as well as C2—H2⋯S3 interactions. The next attractive interaction, with E tot = −48.9 and E dis = −120.3 kJ mol−1, respectively, reflects the N3—H3N⋯S2 hydrogen bonding and S1⋯S1 secondary bonding contact.
Table 3. Summary of interaction energies (kJ mol−1) calculated for (I).
| R (Å) | E ele | E pol | E dis | E rep | E tot | Symmetry operation |
|---|---|---|---|---|---|---|
| 11.06 | −142.4 | −31.6 | −39.9 | 77.9 | −138.4 |
− x, + y, − z
|
| 10.68 | −89.0 | −31.2 | −54.8 | 43.5 | −125.0 |
− x, + y, − z
|
| 4.87 | −50.3 | −50.1 | −120.3 | 176.8 | −48.9 | x, y, z |
| 16.68 | 22.9 | −3.0 | −1.8 | 0.0 | 19.8 | x, y, z |
| 15.95 | 42.9 | −7.4 | −7.5 | 0.8 | 32.8 | x, y, z |
The magnitudes of intermolecular energies, i.e. the E ele, E dis and E tot components, are represented graphically in Fig. 6 ▸(a)–(c), respectively, by energy framework diagrams whereby the cylinders join the centroids of molecular pairs using a red, green and blue colour scheme; the radius of the cylinder is proportional to the magnitude of interaction energy.
Figure 6.
The colour interaction mapping and energy frameworks for (I) showing the (a) electrostatic potential force, (b) dispersion force and (c) total energy diagrams. All cylindrical radii were adjusted to the same scale factor of 100 with a cut-off value of −50.0 kJ mol−1 within a 3 × 3 × 3 unit cell and their sizes are proportional to the relative strength of the corresponding energies.
Molecular orbital calculations
The HOMO and LUMO energies for the atom positions in the crystal structure of (I) were calculated using a pseudo-potential plane-wave DFT method (Parr & Yang, 1994 ▸) implemented in the NWChem package (Valiev et al., 2010 ▸). The plane wave basis set and PBE exchange-correlation functional were chosen for the calculations on the experimental structure, i.e. without geometry optimization. The HOMO and LUMO of (I) are illustrated in Fig. S1 in the supporting information and their energies were calculated to be 3.011 and 6.173 eV, respectively. The HOMO is delocalized across the thiocyanato groups and the bridging region between the two dimers. The LUMO includes the delocalization around the triazole rings.
Database survey
A survey of the Cambridge Structural Database (Groom et al., 2016 ▸) for coordination complexes of HtrzSH yielded seven structures. Monodentate coordination via the thione-S atom, as in (I), has been identified in six structures. The first three of these are neutral and mononuclear, namely [(Ph3P)2Cu(HtrzSH)Cl]·CH3CN, (NEPPOP; Wani et al., 2013 ▸), [Ag(HtrzSH)(NO3)]·CH3OH (GISHUN; Wattanakanjana et al., 2014 ▸) and [Cd(HtrzSH)(H2Edta)]·H2O (LOFKAT; Zhang et al., 2008 ▸); H4Edta is ethylenediamine tetracarboxylic acid. The mononuclear FeIII complex, Fe(NO)2(HtrzS)(HtrzSH)·0.5H2O (EYABOV01; Aldoshin et al., 2008 ▸) contains both neutral and mono-anionic forms of HtrzSH. The fifth structure featuring monodentate coordination of HtrzSH is a two-dimensional coordination polymer, i.e. {[Cd2(O2CCO2)2(HtrzSH)2]·2H2O}n (ZIVBOX; Liang et al., 2014 ▸); there are two distinct CdII atom coordination environments. Two distinct coordination modes for HtrzSH are noted in the structure of [Cd(HtrzSH)2Cl2]n (LOFJEW; Zhang et al., 2008 ▸), i.e. monodentate, as for the above, as well as bidentate, μ2-bridging as one of the triazolyl-N atoms also coordinates CdII in this polymeric structure. In the final structure with HtrzSH, tridentate coordination for HtrzSH via the thione-S atom only has been observed in [Ag(HtrzSH)Cl]n (XINDUV; Kang et al., 2013 ▸), which is a two-dimensional coordination polymer.
As indicated above for Fe(NO)2(HtrzS)(HtrzSH)·0.5H2O (EYABOV01; Aldoshin et al., 2008 ▸), mono-anionic forms of HtrzSH are known. Here, HtrzS functions as a monodentate thiolate-S ligand. A monodentate thiolate-S mode of coordination is also seen in (3-ClC6H4CH2)3Sn(HtrzS) (SUXSAG; Keng et al., 2010 ▸). The three remaining structures feature a tridentate coordination mode leading to coordination polymers. In [Cu(HtrzS)]n (TEHYIQ; Zhang et al., 2012 ▸), this is achieved by bidentate, μ2-bridging by the thiolate-S atom and the participation of one of the triazolyl-N atoms in coordination. In [Pb(HtrzS)(NO3)OH2]n (MOKKAA; Imran et al., 2015 ▸), the thiolate-S and two triazolyl-N atoms are involved in coordination. A similar coordination mode is found for one of the independent anions in [Cd2(HtrzS)2(SO4)]n (LOFJUM; Zhang et al., 2008 ▸). The second anion is tetradentate as the thiolate-S atom is bidentate, μ2-bridging. From the foregoing, it is evident that HtrzSH/HtrzS ligands adopt a wide range of coordination modes in the relatively few structures in which they have been characterized, suggesting further work in this area is warranted.
Synthesis and crystallization
Silver nitrate (0.21 g, 1.24 mmol) and potassium thiocyanate (0.12 g, 1.23 mmol) were dissolved in acetronitrile (25 ml) and a white precipitate formed. This mixture was heated at 323–325 K for 30 min. Then, a clear solution of 1H-1,2,4-triazole-3-thiol (0.25 g, 2.47 mmol) in distilled water (5 ml) was added followed by heating for 4.3 h during which time the precipitate slowly dissolved. The clear solution was filtered and kept to evaporate at ambient temperature. After a few days, colourless trapezoidal prisms of (I) formed, which were filtered off and dried in vacuo. M.p.: 413–417 K. IR (solid KBr pellet, cm−1): 2108 (s) (C≡N), 1479 (s) (C=N), 1248 (w) (C–N), 1054 (m) (C—S) + (C—N).
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 4 ▸. The H atoms were found in difference Fourier maps and their positions refined resulting in distances of N—H = 0.80 (4)–0.877 (10) Å and C—H = 0.89 (4)–0.91 (4) Å, and with U iso(H) = 1.2U eq(N, C). The maximum and minimum residual electron density peaks of 0.96 and 1.04 e Å−3, respectively, were located 0.83 and 0.77 Å from the N3 and Ag atoms, respectively.
Table 4. Experimental details.
| Crystal data | |
| Chemical formula | [Ag2(SCN)2(C2H3N3S)4] |
| M r | 736.44 |
| Crystal system, space group | Monoclinic, P21/n |
| Temperature (K) | 100 |
| a, b, c (Å) | 4.8718 (1), 15.9511 (1), 13.9575 (1) |
| β (°) | 96.945 (1) |
| V (Å3) | 1076.69 (2) |
| Z | 2 |
| Radiation type | Cu Kα |
| μ (mm−1) | 20.35 |
| Crystal size (mm) | 0.41 × 0.14 × 0.11 |
| Data collection | |
| Diffractometer | Rigaku Oxford Diffraction SuperNova, Dual, Cu at zero, AtlasS2 |
| Absorption correction | Gaussian (CrysAlis PRO; Rigaku OD, 2015 ▸) |
| T min, T max | 0.097, 0.453 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 18122, 2266, 2242 |
| R int | 0.039 |
| (sin θ/λ)max (Å−1) | 0.633 |
| Refinement | |
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.025, 0.066, 1.17 |
| No. of reflections | 2266 |
| No. of parameters | 163 |
| No. of restraints | 10 |
| H-atom treatment | Only H-atom coordinates refined |
| Δρmax, Δρmin (e Å−3) | 0.96, −1.04 |
Supplementary Material
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989019016359/hb7868sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989019016359/hb7868Isup2.hkl
Fig. S1 Image of the calculated HOMO and LUMO's for (I). DOI: 10.1107/S2056989019016359/hb7868sup3.tif
CCDC reference: 1969873
Additional supporting information: crystallographic information; 3D view; checkCIF report
supplementary crystallographic information
Crystal data
| [Ag2(SCN)2(C2H3N3S)4] | F(000) = 720 |
| Mr = 736.44 | Dx = 2.272 Mg m−3 |
| Monoclinic, P21/n | Cu Kα radiation, λ = 1.54184 Å |
| a = 4.8718 (1) Å | Cell parameters from 13766 reflections |
| b = 15.9511 (1) Å | θ = 3.2–77.1° |
| c = 13.9575 (1) Å | µ = 20.35 mm−1 |
| β = 96.945 (1)° | T = 100 K |
| V = 1076.69 (2) Å3 | Prism, colourless |
| Z = 2 | 0.41 × 0.14 × 0.11 mm |
Data collection
| Rigaku Oxford Diffraction SuperNova, Dual, Cu at zero, AtlasS2 diffractometer | 2266 independent reflections |
| Mirror monochromator | 2242 reflections with I > 2σ(I) |
| Detector resolution: 5.2303 pixels mm-1 | Rint = 0.039 |
| ω scans | θmax = 77.4°, θmin = 4.2° |
| Absorption correction: gaussian (CrysAlisPro; Rigaku OD, 2015) | h = −6→5 |
| Tmin = 0.097, Tmax = 0.453 | k = −19→20 |
| 18122 measured reflections | l = −17→17 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.025 | Hydrogen site location: difference Fourier map |
| wR(F2) = 0.066 | Only H-atom coordinates refined |
| S = 1.17 | w = 1/[σ2(Fo2) + (0.0343P)2 + 1.905P] where P = (Fo2 + 2Fc2)/3 |
| 2266 reflections | (Δ/σ)max = 0.001 |
| 163 parameters | Δρmax = 0.96 e Å−3 |
| 10 restraints | Δρmin = −1.04 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. C5 treated with ISOR |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Ag | 0.56775 (4) | 0.42032 (2) | 0.59899 (2) | 0.01119 (9) | |
| S1 | 0.81885 (13) | 0.55635 (4) | 0.56609 (4) | 0.00788 (14) | |
| S2 | 0.81257 (13) | 0.29260 (4) | 0.54731 (4) | 0.00780 (14) | |
| S3 | 0.25779 (15) | 0.43047 (4) | 0.73213 (5) | 0.01162 (15) | |
| N1 | 0.4853 (5) | 0.63635 (14) | 0.68422 (16) | 0.0077 (4) | |
| H1N | 0.390 (6) | 0.5923 (15) | 0.698 (3) | 0.009* | |
| N2 | 0.4273 (5) | 0.71516 (14) | 0.71587 (16) | 0.0097 (4) | |
| N3 | 0.7598 (5) | 0.71790 (14) | 0.62260 (16) | 0.0082 (4) | |
| H3N | 0.885 (5) | 0.735 (2) | 0.587 (2) | 0.010* | |
| N4 | 0.4504 (5) | 0.19814 (14) | 0.63991 (16) | 0.0087 (4) | |
| H4N | 0.369 (8) | 0.236 (2) | 0.663 (3) | 0.010* | |
| N5 | 0.3865 (5) | 0.11639 (15) | 0.65884 (17) | 0.0117 (5) | |
| N6 | 0.7280 (5) | 0.12487 (14) | 0.56881 (16) | 0.0089 (4) | |
| H6N | 0.854 (5) | 0.111 (2) | 0.532 (2) | 0.011* | |
| N7 | 0.5604 (6) | 0.40606 (16) | 0.91561 (18) | 0.0150 (5) | |
| C1 | 0.6846 (5) | 0.63623 (16) | 0.62603 (18) | 0.0070 (5) | |
| C2 | 0.5982 (6) | 0.76322 (17) | 0.67677 (19) | 0.0093 (5) | |
| H2 | 0.615 (7) | 0.818 (2) | 0.688 (2) | 0.011* | |
| C3 | 0.6577 (6) | 0.20539 (16) | 0.58544 (18) | 0.0076 (5) | |
| C4 | 0.5594 (6) | 0.07362 (17) | 0.6139 (2) | 0.0110 (6) | |
| H4 | 0.571 (7) | 0.017 (3) | 0.612 (2) | 0.013* | |
| C5 | 0.4422 (6) | 0.41636 (15) | 0.8389 (2) | 0.0089 (5) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Ag | 0.01970 (15) | 0.00638 (12) | 0.00859 (12) | 0.00126 (7) | 0.00616 (8) | −0.00024 (6) |
| S1 | 0.0112 (3) | 0.0055 (3) | 0.0077 (3) | 0.0013 (2) | 0.0041 (2) | −0.0004 (2) |
| S2 | 0.0108 (3) | 0.0057 (3) | 0.0078 (3) | 0.0001 (2) | 0.0048 (2) | 0.0008 (2) |
| S3 | 0.0137 (4) | 0.0139 (3) | 0.0078 (3) | −0.0011 (2) | 0.0037 (2) | 0.0010 (2) |
| N1 | 0.0106 (11) | 0.0055 (10) | 0.0080 (10) | −0.0009 (8) | 0.0056 (8) | −0.0010 (8) |
| N2 | 0.0125 (12) | 0.0072 (10) | 0.0101 (11) | −0.0003 (9) | 0.0043 (9) | −0.0023 (8) |
| N3 | 0.0112 (12) | 0.0057 (10) | 0.0085 (10) | −0.0012 (8) | 0.0046 (8) | −0.0004 (8) |
| N4 | 0.0116 (12) | 0.0047 (10) | 0.0112 (11) | 0.0016 (9) | 0.0063 (9) | 0.0005 (8) |
| N5 | 0.0142 (12) | 0.0078 (11) | 0.0139 (11) | −0.0003 (9) | 0.0053 (9) | 0.0018 (8) |
| N6 | 0.0113 (12) | 0.0070 (10) | 0.0094 (10) | 0.0019 (9) | 0.0051 (8) | 0.0002 (8) |
| N7 | 0.0191 (14) | 0.0151 (11) | 0.0118 (12) | −0.0019 (10) | 0.0064 (10) | 0.0013 (9) |
| C1 | 0.0087 (13) | 0.0075 (12) | 0.0045 (11) | 0.0001 (9) | 0.0001 (9) | 0.0014 (9) |
| C2 | 0.0118 (14) | 0.0069 (12) | 0.0097 (12) | −0.0002 (10) | 0.0029 (10) | −0.0026 (9) |
| C3 | 0.0096 (13) | 0.0090 (12) | 0.0042 (11) | 0.0016 (10) | 0.0007 (9) | 0.0000 (9) |
| C4 | 0.0154 (16) | 0.0070 (13) | 0.0111 (13) | −0.0016 (10) | 0.0034 (11) | 0.0017 (9) |
| C5 | 0.0093 (9) | 0.0086 (8) | 0.0096 (9) | −0.0006 (7) | 0.0041 (7) | −0.0005 (7) |
Geometric parameters (Å, º)
| Ag—S1 | 2.5596 (7) | N3—C2 | 1.363 (3) |
| Ag—S2 | 2.5103 (6) | N3—H3N | 0.877 (10) |
| Ag—S3 | 2.5374 (7) | N4—C3 | 1.341 (3) |
| Ag—S1i | 2.8188 (7) | N4—N5 | 1.374 (3) |
| C1—S1 | 1.698 (3) | N4—H4N | 0.80 (4) |
| S1—Agi | 2.8188 (7) | N5—C4 | 1.302 (4) |
| C3—S2 | 1.698 (3) | N6—C3 | 1.357 (3) |
| C5—S3 | 1.660 (3) | N6—C4 | 1.365 (4) |
| N1—C1 | 1.339 (3) | N6—H6N | 0.878 (7) |
| N1—N2 | 1.373 (3) | N7—C5 | 1.164 (4) |
| N1—H1N | 0.878 (10) | C2—H2 | 0.89 (4) |
| N2—C2 | 1.299 (4) | C4—H4 | 0.91 (4) |
| N3—C1 | 1.356 (3) | ||
| S1—Ag—S2 | 112.49 (2) | C3—N4—H4N | 127 (3) |
| S1—Ag—S3 | 114.64 (2) | N5—N4—H4N | 120 (3) |
| S1—Ag—S1i | 91.60 (2) | C4—N5—N4 | 103.3 (2) |
| S2—Ag—S3 | 127.43 (2) | C3—N6—C4 | 108.0 (2) |
| S2—Ag—S1i | 99.56 (2) | C3—N6—H6N | 123 (2) |
| S3—Ag—S1i | 101.08 (2) | C4—N6—H6N | 128 (2) |
| C1—S1—Ag | 109.08 (9) | N1—C1—N3 | 103.8 (2) |
| C1—S1—Agi | 92.55 (9) | N1—C1—S1 | 130.6 (2) |
| Ag—S1—Agi | 88.40 (2) | N3—C1—S1 | 125.6 (2) |
| C3—S2—Ag | 109.28 (9) | N2—C2—N3 | 111.3 (2) |
| C5—S3—Ag | 110.08 (10) | N2—C2—H2 | 124 (2) |
| C1—N1—N2 | 112.9 (2) | N3—C2—H2 | 124 (2) |
| C1—N1—H1N | 125 (2) | N4—C3—N6 | 103.8 (2) |
| N2—N1—H1N | 122 (2) | N4—C3—S2 | 129.9 (2) |
| C2—N2—N1 | 103.8 (2) | N6—C3—S2 | 126.2 (2) |
| C1—N3—C2 | 108.3 (2) | N5—C4—N6 | 111.6 (2) |
| C1—N3—H3N | 122 (2) | N5—C4—H4 | 126 (2) |
| C2—N3—H3N | 130 (2) | N6—C4—H4 | 122 (2) |
| C3—N4—N5 | 113.3 (2) | N7—C5—S3 | 176.9 (3) |
| C1—N1—N2—C2 | −0.8 (3) | N1—N2—C2—N3 | −0.2 (3) |
| C3—N4—N5—C4 | −0.4 (3) | C1—N3—C2—N2 | 1.0 (3) |
| N2—N1—C1—N3 | 1.4 (3) | N5—N4—C3—N6 | 0.2 (3) |
| N2—N1—C1—S1 | −177.4 (2) | N5—N4—C3—S2 | −177.8 (2) |
| C2—N3—C1—N1 | −1.4 (3) | C4—N6—C3—N4 | 0.1 (3) |
| C2—N3—C1—S1 | 177.5 (2) | C4—N6—C3—S2 | 178.2 (2) |
| Ag—S1—C1—N1 | 1.2 (3) | Ag—S2—C3—N4 | −4.3 (3) |
| Agi—S1—C1—N1 | 90.4 (3) | Ag—S2—C3—N6 | 178.2 (2) |
| Ag—S1—C1—N3 | −177.4 (2) | N4—N5—C4—N6 | 0.4 (3) |
| Agi—S1—C1—N3 | −88.2 (2) | C3—N6—C4—N5 | −0.4 (3) |
Symmetry code: (i) −x+1, −y+1, −z+1.
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1N···S3 | 0.88 (1) | 2.72 (2) | 3.555 (2) | 161 (3) |
| N1—H1N···N5ii | 0.88 (3) | 2.57 (4) | 3.023 (3) | 113 |
| N3—H3N···S2iii | 0.88 (1) | 2.56 (2) | 3.345 (2) | 150 (3) |
| N4—H4N···N2iv | 0.80 (4) | 2.38 (4) | 2.900 (3) | 123 (3) |
| N6—H6N···N7v | 0.88 (1) | 2.03 (1) | 2.877 (3) | 163 (3) |
| C2—H2···S3ii | 0.89 (4) | 2.87 (4) | 3.504 (3) | 129 (3) |
| C2—H2···N7vi | 0.89 (4) | 2.66 (3) | 3.184 (4) | 118 (3) |
| C4—H4···N7vii | 0.91 (4) | 2.58 (4) | 3.306 (4) | 137 (3) |
Symmetry codes: (ii) −x+1/2, y+1/2, −z+3/2; (iii) −x+2, −y+1, −z+1; (iv) −x+1/2, y−1/2, −z+3/2; (v) x+1/2, −y+1/2, z−1/2; (vi) −x+3/2, y+1/2, −z+3/2; (vii) −x+3/2, y−1/2, −z+3/2.
Funding Statement
This work was funded by Prince of Songkla University grant SCI570390S. PERCH–CIC grant . Ministry of Education grant . Prince of Songkla University grant . Sunway University grant STR-RCTR-RCCM-001–2019.
References
- Aldoshin, S. M., Lyssenko, K. A., Antipin, M. Yu., Sanina, N. A. & Gritsenko, V. V. (2008). J. Mol. Struct. 875, 309–315.
- Almasirad, A., Tabatabai, S. A., Faizi, M., Kebriaeezadeh, A., Mehrabi, N., Dalvandi, A. & Shafiee, A. (2004). Bioorg. Med. Chem. Lett. 14, 6057–6059. [DOI] [PubMed]
- Al-Soud, Y. A., Al-Masoudi, N. A. & Ferwanah, A. E. S. (2003). Bioorg. Med. Chem. 11, 1701–1708. [DOI] [PubMed]
- Altundas, A., Sarı, N., Colak, N. & Ögütcü, H. (2010). Med. Chem. Res. 19, 576–588.
- Amer, S., El-Wakiel, N. & El-Ghamry, H. (2013). J. Mol. Struct. 1049, 326–335.
- Amir, M. & Shikha, K. (2004). Eur. J. Med. Chem. 39, 535–545. [DOI] [PubMed]
- Bheeter, S. R., Rajalakshmi, R. T., Vasanth, N. & Dons, T. (2016). Int. J. Appl. Res. (Delhi), 2, 760–763.
- Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany.
- Büyükekşi, S. I., Erkısa, M., Şengül, A., Ulukaya, E. & Oral, A. Y. (2018). Appl. Organomet. Chem. 32, e4406.
- Dharmaraj, N., Viswanathamurthi, P. & Natarajan, K. (2001). Transit. Met. Chem. 26, 105–109.
- Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
- Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. [DOI] [PMC free article] [PubMed]
- Imran, M., Mix, A., Neumann, B., Stammler, H.-G., Monkowius, U., Gründlinger, P. & Mitzel, N. W. (2015). Dalton Trans. 44, 924–937. [DOI] [PubMed]
- Kang, X.-P., Hu, Y.-S., Zhu, L.-H. & An, Z. (2013). Inorg. Chem. Commun. 29, 169–171.
- Keng, T. C., Lo, K. M. & Ng, S. W. (2010). Acta Cryst. E66, m1064. [DOI] [PMC free article] [PubMed]
- Kodcharat, K., Pakawatchai, C. & Saithong, S. (2013). Acta Cryst. E69, m265–m266. [DOI] [PMC free article] [PubMed]
- Liang, Q., Wang, Y.-L., Zhao, Y. & Cao, G.-J. (2014). Acta Cryst. C70, 182–184. [DOI] [PubMed]
- Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470.
- McKinnon, J. J., Spackman, M. A. & Mitchell, A. S. (2004). Acta Cryst. B60, 627–668. [DOI] [PubMed]
- Parr, R. G. & Yang, W. (1994). Density-Functional Theory of Atoms and Molecules. Oxford University Press.
- Rigaku OD (2015). CrysAlis PRO. Rigaku Oxford Diffraction, Yarnton, England.
- Sheldrick, G. M. (2015). Acta Cryst. C71, 3–8.
- Singh, K., Singh, D. P., Barwa, M. S., Tyagi, P. & Mirza, Y. (2006). J. Enzyme Inhib. Med. Chem. 21, 557–562. [DOI] [PubMed]
- Tan, S. L., Jotani, M. M. & Tiekink, E. R. T. (2019). Acta Cryst. E75, 308–318. [DOI] [PMC free article] [PubMed]
- Turan-Zitouni, G., Kaplancıklı, Z. A., Yıldız, M. T., Chevallet, P. & Kaya, D. (2005). Eur. J. Med. Chem. 40, 607–613. [DOI] [PubMed]
- Turner, M. J., McKinnon, J. J., Wolff, S. K., Grimwood, D. J., Spackman, P. R., Jayatilaka, D. & Spackman, M. A. (2017). Crystal Explorer 17. University of Western Australia.
- Valiev, M., Bylaska, E. J., Govind, N., Kowalski, K., Straatsma, T. P., Van Dam, H. J. J., Wang, D., Nieplocha, J., Apra, E., Windus, T. L. & de Jong, W. A. (2010). Comput. Phys. Commun. 181, 1477–1489.
- Walczak, K., Gondela, A. & Suwiński, J. (2004). Eur. J. Med. Chem. 39, 849–853. [DOI] [PubMed]
- Wani, K., Pakawatchai, C. & Saithong, S. (2013). Acta Cryst. E69, m34–m35. [DOI] [PMC free article] [PubMed]
- Wattanakanjana, Y., Palamae, S., Ratthiwan, J. & Nimthong, R. (2014). Acta Cryst. E70, m61–m62. [DOI] [PMC free article] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
- Zhang, R.-B., Li, Z.-J., Cheng, J.-K., Qin, Y.-Y., Zhang, J. & Yao, Y.-G. (2008). Cryst. Growth Des. 8, 2562–2573.
- Zhang, X., Cheng, J.-K., Zhang, M.-J. & Yao, Y.-G. (2012). Inorg. Chem. Commun. 20, 101–104.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989019016359/hb7868sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989019016359/hb7868Isup2.hkl
Fig. S1 Image of the calculated HOMO and LUMO's for (I). DOI: 10.1107/S2056989019016359/hb7868sup3.tif
CCDC reference: 1969873
Additional supporting information: crystallographic information; 3D view; checkCIF report






