Skip to main content
NIHPA Author Manuscripts logoLink to NIHPA Author Manuscripts
. Author manuscript; available in PMC: 2021 Jan 15.
Published in final edited form as: Neuroscience. 2019 Nov 28;425:194–216. doi: 10.1016/j.neuroscience.2019.11.001

Tonic resting-state hubness supports high-gamma activity defined verbal-memory encoding network in epilepsy

Chaitanya Ganne 1, Walter Hinds 2, James Kragel 3, Xiaosong He 1, Noah Sideman 1, Youssef Ezzyat 3, Michael R Sperling 1, Ashwini Sharan 4, Joseph I Tracy 1,*
PMCID: PMC6945984  NIHMSID: NIHMS1545634  PMID: 31786346

Abstract

High gamma activity (HGA) of verbal-memory encoding using invasive-electroencephalogram has laid the foundation for numerous studies testing the integrity of memory in diseased populations. Yet, the functional connectivity characteristics of networks subserving these memory linkages remains uncertain. By integrating this electrophysiological biomarker of memory encoding from IEEG with resting-state BOLD fluctuations, we estimated the segregation and hubness of HGA-memory regions in drug-resistant epilepsy patients and matched healthy controls. HGA-memory regions express distinctly different hubness compared to neighboring regions in health and in epilepsy, and this hubness was more relevant than segregation in predicting verbal memory encoding. The HGA-memory network comprised regions from both the cognitive control and primary processing networks, validating that effective verbal-memory encoding requires integrating brain functions, and is not dominated by a central cognitive core. Our results demonstrate a tonic intrinsic set of functional connectivity, which provides the necessary conditions for effective, phasic, task-dependent memory encoding.

Keywords: Verbal memory, High-gamma activity, Betweenness centrality, Hubness, Participation coefficient, Intrinsic networks

Introduction

Successful episodic verbal memory encoding, termed the ‘Subsequent Memory Effect’ (SME) is associated with high gamma activity (HGA) captured using power spectral and synchronization studies during invasive electroencephalography (IEEG) in association with neuronal firing (Burke JF et al., 2015;Kucewicz MT et al., 2017;Lega BC et al., 2012;Long NM et al., 2014;Sederberg PB et al., 2006;Serruya MD et al., 2014;Solomon EA et al., 2017;Solomon EA et al., 2019). Despite these well-established linkages, relatively little is known about the whole-brain organization of HGA regions and the degree to which these regions possess either distinct network features relative to other brain areas, or rely on abnormal organizational properties due to epilepsy. High gamma activity in human cortex can extend beyond 100Hz across various functions tested such as language (Arya R et al., 2018), attention (Ray S et al., 2008), navigation (Pu Y et al., 2018), spatial (Stevenson RF et al., 2018) and working memory (Lundqvist M et al., 2018). However, in the field of human verbal memory encoding, studies have consistently found gamma activity ranging from 30/45Hz to up to 100Hz to be associated with successful verbal memory encoding. For instance, Kucewicz and colleagues demonstrated that memory related broadband gamma activity centroids were in the range of 30-100Hz (Kucewicz MT, et al., 2017). Two recent studies in human memory network analysis with a pooled cohort of patients similar to those included in this study, showed that successful memory encoding is associated with asynchronous organization of the memory network in gamma activity less than 100Hz and synchronous theta activity, with widespread high gamma activity considered to be the hallmark of memory encoding (Solomon EA, et al., 2017;Solomon EA, et al., 2019). In this project, we were interested in investigating the intrinsic BOLD correlations of the memory network already known to play a major role in human memory, all toward determining if such networks possess distinctive whole-brain organization properties. Hence, for the purposes of this study we limited our gamma range to 44-100Hz.

While evidence exists to suggest that memory-relevant regions in the epileptic brain can take up normative network roles in an effort to preserve function (Jin SH et al., 2015;Powell HW et al., 2007;Solomon EA, et al., 2017;Tracy J et al., 2014), the network properties characterizing these memory regions in health and in disease are unclear. In this study, we integrate IEEG with resting-state fMRI (rsfMRI) data to characterize the network architecture of a task-defined HGA-memory network and understand its relationship to the functional connectivity of a set of intrinsic resting-state networks. Graph theory has been a useful in characterizing the properties of functional networks during task and at rest. Three important graph indices that are essential in characterizing brain regions and their functionality include: (1) clustering coefficient (CC), which captures network segregation and local information processing and (2) betweenness centrality (BC), which captures hubness and the degree of importance held by a region that connects two or more modules and (3) participation coefficient (PC) which measures the extent to which regions within a network connect to networks other than its own. While BC indicates regions that have considerable influence within a network by virtue of their control over information passing between others, it does not reveal anything about the diversity of inter-network connections of individual nodes. In contrast, PC helps identify influential nodes in a network that are likely to be highly connected to other networks and, as a result, communicate and exert influence over these other networks. In our study, PC helps verify the actual level of interaction of the HGA network with the intrinsic networks (Power JD et al., 2013).

Prior studies combining IEEG and fMRI have shown a good correspondence between gamma activity and blood oxygen level dependent (BOLD) contrast signal, offering a key link between electrophysiological and hemodynamic properties of human cognition (Axmacher N et al., 2008;Jacques C et al., 2016;Khursheed F et al., 2011;Logothetis NK et al., 2001;Rugg MD et al., 2002). Integrating IEEG with rsfMRI has the advantage of sampling the wider brain regions, allowing us to test the correspondence between the information embedded in the faster dynamics of IEEG data and the slower BOLD response (Mizuhara H, 2012;Mizuhara H et al., 2005). In this study, we address four specific questions: First, how does the resting-state functional connectivity (rsFC) of the HGA-memory network involved in verbal-memory encoding differ from neighboring regions that lack significant SME? Second, are the network characteristics of HGA-memory regions in epilepsy patients generalizable, or do they differ from those of matched healthy controls? Third, by discovering the key features of the HGA-memory network and studying their relationship to other intrinsic networks, can we reveal the trait-like properties of the intrinsic state, as well as the constituent cognitive processes that are necessary for effective memory encoding? Fourth, are HGA-memory network characteristics associated with and able to predict clinically relevant verbal-memory performance in epilepsy?

METHODS

Participants

Thirty-seven patients with drug-resistant epilepsy were recruited from the Thomas Jefferson University Comprehensive Epilepsy Center. They underwent IEEG implantation (subdural, depth, or both) to localize the epileptogenic zone and guide potential surgical management of their seizures (Table 1). Sites of implantation were determined by multimodal pre-surgical evaluation (Sperling MR et al., 1996). Specific to this study, patients underwent a 3T-MRI scan involving resting state (rsfMRI), a high resolution anatomical image (T1MPRAGE) (Philips Achieva, Amsterdam, Netherlands), pre-surgical neuropsychological assessment (NPA) to provide a baseline indication of the patients verbal-memory skills, followed by IEEG implantation and monitoring (Nihon Kohden EEG-1200, Irvine, CA) during which patients participated in verbal episodic memory testing (free-recall paradigm). This provided memory scores at two stages of evaluation: percent recall from a word-list memory test administered simultaneously with IEEG recording (P.REC), and the sum-total of words recalled from a similar memory test administered during baseline neuropsychological testing (CVLT Total Learning - CVLT-TL).

Table 1: Demographic and clinical characteristics.

Both patients and healthy controls were matched for age, gender, handedness, education and head motion. Further demographic data specific to the patients have been enumerated in this table. (M: Mean, SD: Standard Deviation, FOA: Focal Onset Aware Seizures, FOIA: Focal Onset seizures with Impaired Awareness; BTCS: focal seizures progressing to bilateral tonic-clonic seizures, VGNC: Voltage-gated sodium channel blockers: CBZ: carbamazepine, OXC: oxcarbazepine, PHY: phenytoin, GABAa Agonist: Gamma aminobutyric acid a receptor agonist: PB: barbiturates; BZDs: benzodiazepines (diazepam, lorazepam, clonazepam, clobazam); SV2a Receptor-Mediated AEDs: LVA: levetiracetam; CRMP2 Receptor-Mediated AEDs: LCM: lacosamide; VGCC: Voltage-gated calcium channel: PGB: pregabalin; GBP: gabapentin; Multi-action AEDs: VPA: valproate; TPM: topiramate; Pr: Primidone).

Sample Group (N) Patients 37 Controls 37 F/T/χ2 P

Age (M±SD) 36.86±10.69 33.91±12.65 1.08 0.28
Gender (M/F) 21/16 24/13 0.23 0.63
Education (years, M±SD) 13.67±2.62 14.2±1.72 −1.39 0.16
Handedness (R:L) 30/7 26/11 0.66 0.41
Head Motion (FD_Jenkinson) 0.12±0.01 0.10±0.04 −0.90 0.36
Free-recall Measures
P.REC 21.15±9.2%
CVLT-TL 48.4±11.2%
Age at Epilepsy Onset (M±SD; years) 20.94±13.19 - - -
Duration of Epilepsy (M±SD; years) 15.92±10.25 - - -
Seizure Type - - -
FOIA 6 - - -
FOIA+BTCS 17 - - -
FOIA/FOA 4 - - -
FOIA/FOA+BTCS 6 - - -
FOA+BTCS 4 - - -
Anti-Epileptic Drugs - - -
VGNC CBZ,OXC,LTG, PHT 24 - - -
GABAa Agonist PB, BZD, Pr 7 - - -
SV2a Receptor Mediated LVA 15 - - -
CRMP2 Receptor Mediated LCM 8 - - -
Multi-Action VPA, TPM, ZNS 17 - - -
VGCC PGB, GBP 4 - - -

Patients were excluded from the study for any of the following reasons: previous brain surgery; medical illness with central nervous system impact other than epilepsy; contraindications to MRI; or hospitalization for major psychiatric disorders as per Diagnostic and Statistical Manual of Mental Disorders-V, except depressive disorders were allowed given the high comorbidity of depression and epilepsy (Tracy JI et al., 2007). Healthy controls (HC, N=37) were recruited to match the patients in age, gender, handedness, and education. Since IEEG data can only be acquired from patients with epilepsy, we needed to test if the network characteristics of HGA-memory regions in epilepsy patients are generalizable (i.e., do they differ from those of matched, healthy controls?). Hence, regions homologous to the HGA-memory network and the neighboring controls nodes (described later) were identified in the healthy controls and their network characteristics were tested and compared to patients. All participants provided written informed consent as per the TJU Institutional Review Board requirements.

IEEG acquisition and free-recall testing

IEEG data [subdural grids and strips (10mm resolution) or depth electrodes (5-10mm resolution)] were recorded [Nihon-Kohden IEEG system (sampling rate >500Hz)] from the patients performing delayed free recall of categorized and unrelated word lists in three distinct phases of encoding, delay, and retrieval (https://github.com/pennmem/wordpool)[PyEPL software](Geller AS et al., 2007). Participants were instructed to commit each list of words to memory. Recalled responses were digitally recorded and parsed/scored offline using the University of Pennsylvania Total Recall program (http://memory.psych.upenn.edu/TotalRecall). Participants performed up to 25 recall trials in a single recall session. During encoding, lists of 12 words were presented (each word for 1600ms followed by a blank inter-stimulus interval of 750 to 1000ms). Following a math distractor task, the participant recalled as many words as possible from the most recent list presented (recall period-30s). (Figure 1). A measure of immediate recall, representing the percentage of words recalled across the multiple trials was utilized (percent recall, P.REC).

Figure 1: Free-recall task design:

Figure 1:

This is a schematic representation of simultaneous IEEG acquisition and encoding/free recall testing sessions administered to the epilepsy patients in the EMU. Time-synced markers for stimulus presentation were recorded on the IEEG signal. There were 3 phases of the task: 1) encoding, where a list of new random words is presented to the subject and they were asked to commit them to memory. During encoding, lists of 12 words were presented (each word for 1600ms followed by a blank inter-stimulus interval (ISI) of 750 to 1000ms). 2) distractor task, involving a 20s post-encoding delay period containing an arithmetic task was given to disrupt memory for end-of-list items (patients solved math problems of the form A+B+C=X using a response keypad). 3) recall, where the subject was asked to recall the words presented during the encoding phase. This design provided information about IEEG activity during the words that were successfully encoded verses those that were forgotten. Recalled responses were digitally recorded and parsed/scored offline using the University of Pennsylvania Total Recall program (http://memory.psych.upenn.edu/TotalRecall). A measure of immediate recall, representing the percentage of words recalled across the multiple trials was estimated (percent recall, P.REC). Participants performed up to 25 recall trials (i.e., lists) in a single recall session.

Signals recorded were first referenced to a common contact placed intracranially, on the scalp, or mastoid process. To eliminate potentially confounding large-scale artifacts and noise on the reference channel and to estimate the power analyses, we calculated the bipolar derivative where each electrode was linked to the next along a chain. Electrodes which were a part of the epileptogenic zone were excluded, so as not to confound power spectral changes related to memory with those caused by epileptogenic activity (ictal or interictal). Data was downsampled to 500Hz uniformly. The bipolar time-series derived from the implanted electrodes were band-pass filtered with a 4th order Butterworth band-reject filter from 58 to 62Hz to exclude line-noise. To quantify memory-related changes in spectral power, complex-valued Morlet wavelets (wave number 6) were convolved with the down-sampled (200Hz) bipolar IEEG signals to obtain magnitude information. Ten wavelets with center frequencies logarithmically-spaced between 44 and 100Hz were used to estimate changes in gamma power. The average spectral power for each encoding event was computed from the onset of each stimulus for a duration of 1600ms, with a buffer of 1000ms. Prior to computing the subsequent memory effect (SME), power values for each bipolar pair were log-transformed and normalized to have zero mean and unit standard deviation within each session. A paired t-test was performed between the gamma power of words that were remembered and words that were forgotten at each bipolar pair. A significant increase in the gamma power provided a measure of the subsequent memory effect (SME).

Subsequently, anatomic localization of bipolar pairs (computed as the mid-point between the two contacts) was accomplished using 2 independent processing pipelines for depth and surface electrodes which were later transformed to MNI space similar to previous studies (Burke JF et al., 2013;Kragel JE et al., 2017).

Functional MRI data acquisition and preprocessing

All participants (patients and healthy controls) underwent a rsfMRI scan (single-shot echo-planar gradient echo sequence, 120 volumes; 34 slices; TR = 2.5s, TE = 35ms; flip angle (FA) = 90°, FOV=256 mm, 128×128 matrix, resolution: 2×2×4mm) in a 3T MRI scanner (Philips Achieva) and T1-MPRAGE scan (180 slices, 256×256 isotropic 1mm voxels; TR/TE/FA=640ms/3.2ms/8°, FOV=256 mm). Patients were instructed to stay awake, keep their eyes closed, and stay relaxed. Patients who reported seizures within 24 hours of the scheduled MRI appointment were not scanned. The scans were performed mid-day so that patients were cooperative, alert, and not fatigued. The resting-state scan was performed immediately after the T1 image, within 15 minutes of starting the scan, to help ensure that there was no fatigue from being within the scanner. Subject’s promptness in responding to oral commands immediately after the resting-state scan was used to confirm the participant’s level of alertness. If there was any indication that the participant fell asleep or was not awake and alert, their data were excluded from analyses.

All imaging data were preprocessed using Data Processing Assistant for rsfMRI Advanced Edition (http://www.rfmri.org/DPARSF)(Yan CG et al., 2010), a MATLAB toolbox based on Statistical Parametric Mapping-8 (http://www.fil.ion.ucl.ac.uk/spm/software/spm8) in the following order: removal of first three fMRI volumes to maintain BOLD signal homogeneity, interleaved manner slice timing correction with the mid-time slice as a reference, realignment and co-registration of T1-MPRAGE and the corresponding rsfMRI, brain extraction using Brain Extraction Toolkit (https://github.com/neurolabusc/MRIcro), segmentation of the T1MPRAGE with neo-segmentation algorithm+DARTEL (http://www.fil.ion.ucl.ac.uk/spm/software/spm8), nuisance covariate regression using Friston’s 24-parameter model (Friston KJ et al., 1996), cerebral spinal fluid and white matter mask regression using CompCor (Ashburner J et al., 2005;Yan CG et al., 2013), filtering resultant fMRI data between 0.008-0.1Hz, normalization to the MNI space and smoothing using a Gaussian Kernel of 4mm full width half maximum (FWHM).

Graph Theory analysis

Using the Lausanne’s atlas of 234 cortical and subcortical regions of interest (ROI), a 234×234 correlation-matrix was calculated at individual subject level. Minimum Spanning Tree (MST) based networks were derived to ensure the same number of connected nodes for all subjects, allowing for reliable group-level comparisons and yielding a series of graphs with connection density ranging from 5% to 50% in increments of 1% (Stam C et al., 2014;Tewarie P et al., 2015;van Diessen E et al., 2013). The density range of 5% to 50% was chosen for the following reasons: (1) network measures are relatively constant over this range (Alexander-Bloch AF et al., 2010); (2) previous work has suggested that above a density of 50% graphs become more random (Humphries MD et al., 2006) and prone to non-biological features and noise (Kaiser M et al., 2006). Using these graphs, CC, BC and PC were calculated using Brain Connectivity Toolbox (www.brain-connectivity-toolbox.net) (Rubinov M et al., 2010).

Defining HGA-memory regions and their neighboring control nodes (CNs) for rsfMRI analysis

Brain regions where IEEG showed significant SME with increased HGA were termed HGA-memory regions. Regions where IEEG recorded HGA, but the results did not survive statistical significance for successful memory encoding were termed Control Nodes (CNs).

The 3731 IEEG bipolar contacts for all the patients were superimposed into a single MNI coordinate space, referred to as the “super-brain” (FIGURE 2A and B).

Figure 2: IEEG implantation and electrode assignment to brain parcels:

Figure 2:

(A) The 3731 IEEG bipolar contacts for all the patients were superimposed into MNI coordinate space, referred to as the “super-brain”. (B) Shows the distribution of the IEEG bipolar contacts in the different lobes across all subjects (N=37). (C) Is an example of the assignment of the bipolar IEEG contacts to the nearest parcel of the Lausanne’s atlas. Here we note a total of 188 electrodes (green spheres) from 37 patients were assigned to bilateral precentral gyri (yellow regions) of the super-brain. The minimum number of bipolar contacts in any given parcel were no less than 16 in number. (D) The warm yellow color represents the HGA-memory regions and the cool cyan color represents the closest set of controls nodes (CN.1). The brain regions were illustrated in BrainNet Viewer (http://www.nitrc.org/proiects/bnv/).

The MNI coordinates of these contacts were then warped to the nearest 3D Cartesian coordinates in the Euclidean space of each of the ROIs of the Lausanne atlas (Hagmann P et al., 2008) (FIGURE 2C). In order to avoid the probability of the algorithm wrongly assigning the electrodes to subcortical structures, we excluded these regions, yielding an atlas with 222 implant-relevant regions. Each electrode coordinate was warped to the coordinate of the nearest ROI of the Lausanne atlas. This allowed us to group the 3731 contacts into their respective 222 ROIs. Once this was done, the t-values of the multiple electrodes within each ROI were submitted to a positive tailed one-sample t-test to determine if there was a significant increase in HGA between remembered words and forgotten words. The P-values generated for the 222 ROIs were subjected to FDR correction for multiple comparison correction (Genovese CR et al., 2002). The FDR corrected significant HGA-memory ROIs were grouped and henceforth referred to as HGA-memory network.

For every HGA-memory region, we identified the nearest 5 CNs based on their Euclidian distance, as these neighboring CNs had the highest chance of being implanted and providing contrast to HGA recordings. The ROIs closest to a HGA-memory region were grouped as first control nodes (CN.1) and second closest as CN.2. To avoid the bias of the distance from the HGA-memory regions, we chose a random ROI among the first 5 CNs, and refer to these as the ‘random distance control nodes’ (CN.RAND).

Hubness and Participation coefficient of the HGA-memory network in comparison with the intrinsic networks

Since the HGA-memory network was found to have regions distributed widely over the brain, we were interested in looking at whether the these regions had membership in other intrinsic networks. Hence, we assigned the different regions of the Lausanne’s atlas to the different intrinsic networks as defined by Gu et al (Gu S et al., 2015) and estimated the percentage contribution of the different intrinsic networks to the HGA-memory network (i.e., percentages avoid bias from the different number of ROI’s that constitute each intrinsic network). The networks included cognitive control systems (temporal (TN), frontoparietal (FPN), dorsal attention (DAN), and cinguloopercular (COpN) networks), primary processing networks (sensorimotor (SMN), visual integrated (VIN) and auditory (AN) networks and a task-negative network, the default mode network (DMN).

Noting that HGA-memory network does not constitute an intrinsic network, nor a surrogate for any one of them, we estimated the average BC and PC of each of the networks (AvgBC and AvgPC respectively), and sought to determine if the BC and PC of the HGA-memory network differed from that of the intrinsic networks using ANOVA. We ranked the networks according to their AvgBC values. To further understand the nature of the overlap between intrinsic networks and the HGA-memory network, we tested whether the BC of ROIs of an intrinsic network that contributed to the HGA-memory network differed from those that did not form a part of the memory network.

Statistical analysis

Chi-square or t-tests, as appropriate, were used to compare the groups on demographic and clinical variables (p<0.05 was considered significant). To assess group (patient vs. controls), region (HGA-memory regions vs. CNs), and group-by-region effects, we ran a two-way ANOVA on the graph indices (CC and BC) at two levels: 1) the ‘composite network’ level and 2) ‘individual region’ level. At a ‘composite network’ level, the average-CC (AvgCC) and average-BC (AvgBC) across the separate HGA-memory regions and CNs were calculated and served as the dependent variables in the ANOVAs. The ANOVAs contrasting the HGA-memory regions with the three available CN ROI’s (CN.1, CN.2, and CN.RAND) were run in separate models. At the ‘individual region’ level, the NodalCC and NodalBC of HGA-memory regions and CNs served as the dependent variables in the ANOVAs. An HGA-memory region was considered significantly different from the CNs only when each it was shown to be reliably different from all three CNs (CN.1, CN.2, and CN.RAND) using Boolean conjunction analysis.

Sigregion-effect=(SigHGAfromANOVA.1)ʌ(SigHGAfromANOVA.2)ʌ(SigHGAfromANOVA.3) Eq. 1

Where Sig region-effect is the significant region-effect, ANOVA.1 is tested between HGA-memory region and CN.1, ANOVA.2 is tested between HGA-memory region and CN.2 and ANOVA.3 is tested between HGA-memory region and CN.RAND and ʌ is the commutative conjunction operator. This was a stringent requirement for significance ensuring that HGA-memory regions with a significant difference in graph indices to only a single CN were not considered valid. Throughout the analysis, multiple comparison correction was calculated using the false discovery rate (pFDR). The difference in AvgBC and AvgPC of the HGA-memory network in comparison with the intrinsic networks was tested using repeated-measures ANOVA with Fisher’s Least Significant Difference (LSD).

Multivariate machine learning to predict free-recall performance

We used a ‘Random Forest’ (RF) model to determine the relationship between fMRI graph indices (NodalBC and NodalCC, as the predictor variables) and free-recall performance (P.REC and CVLT-TL, tested separately, i.e., the response variable). CVLT-TL is sensitive to memory encoding and immediate recall, comparable in this sense to the P.REC measure. RF is an efficient, supervised machine learning method that identifies both linear and non-linear brain-behavior relationships, allows simultaneous testing of multivariate interactions, and shows superior resilience to over-fitting (Breiman L, 2001). The algorithm exploits random decision trees, which use a subset of the observations through bootstrapping techniques. In short, from the original data set a random selection of the training data is sampled and used to build a model. The model is then tested on the data not included in the training sample, referred to as “out-of-bag”. The random forest algorithm estimates the variable importance (VI) by looking at how much prediction error increases when out-of-bag data for that variable is permuted while all others are left unchanged. (Liaw A et al., 2002). Briefly, we estimated the true VI for each predictor for 1000 repetitions. Next, we established a null distribution of VIs for every predictor by estimating their VI from models trained with the response variable randomly permuted a 1000 times. Based on the true VI, the VI of each predictor from each random permutation, a probability can be estimated based on its corresponding normal cumulative null distribution, with a variable considered significant if the probability is larger than 95%. Lastly, we selected predictors whose VIs were found significant at least 950 times over the 1000 repetitions, to build RF models and predict the response. The association between the predictions and actual scores was tested using a right-tailed Pearson correlation (He X et al., 2018). In addition, stepwise linear regression models on the two response variables were run with the selected predictors from the RF models serving as independent variables, allowing us to explore any directional or ranking effects among the predictors.

RESULTS

Demographic and clinical characteristics of the groups (patients and controls)

The demographic details of the patients and healthy controls are listed in Table 1 (also Appendix A). They were matched for age, gender, handedness, years of education, and head micro-movement during rsfMRI (p>0.05) and all participants were awake and alert at the end of the resting state scan and promptly responded to oral commands. Relative to same-age peers, the patients had CVLT-TL performance in the average range (t=48, age-normed), indicating intact memory encoding ability.

Defining HGA-memory regions and their neighboring control nodes

Brain regions where IEEG showed significant SME with increased HGA were termed HGA-memory regions. They included regions of lateral occipital cortex and the inferotemporal surface consisting of the fusiform gyri along with regions of the lateral temporal cortex, dorsolateral prefrontal cortex, precuneus, and cinguloopercular regions. They areas also included discrete regions of bilateral lateral neocortices involving the left rostral middle frontal, inferior temporal, cingulate, postcentral, inferior parietal, insular (LrMFG, LITG, LPostCinG, LIstCinG, LIPL, LInsG), bilateral superior frontal, parietal, inferior temporal, and fusiform gyri (B/LSFG, B/LSPG, B/LITG, B/LFusG) (pFDR<0.0058). The corresponding control regions were identified (Table 2 and Figure 2D).

Table 2: HGA-memory regions (HGA) and their corresponding control nodes (CN).

The 3731 electrodes after being assigned to the different brain regions were tested for significant subsequent memory effect (HGA). Once these regions were derived based on nearest Euclidean distances we determined the three neighboring control nodes (CN.1, CN.2, and CN.RAND). (ROI# - The ROI numbering as per the atlas; HGA-memory region– IEEG defined ROIs which were significant for HGA-memory activity; CN – Control nodes that are measured at 3 different Euclidean Distances; R.superiorfrontal (RSFG), R.precentral (RPreCG), R.superiorparietal (RSPG), R.lateraloccipital (RLatOG), R.fusiform (RFusG), R.inferiortemporal (RITG), L.parsopercularis (LparsOp), L.parstriangularis (LparsTri), L.rostralmiddlefrontal (LrMFG), L.superiorfrontal (LSFG), L.posteriorcingulate (LPostCinG), L.isthmuscingulate (LIstCinG), L.postcentral (LPostCG), L.superiorparietal (LSPG), L.inferiorparietal (LIPG), L.fusiform (LFusG), L.inferiortemporal (LITG), L.middletemporal (LMTG), L.insula (LIns), R.lingual (RLinG), R.entorhinal (REntRG), R.middletemporal (RMTG), L.lateralorbitofrontal (LLatOrbFG), L.caudalmiddlefrontal (LcMFG), L.precuneus (LPC), L.entorhinal (LEntRG), L.superiortemporal (LSTG), L.transversetemporal (LTransTG), R.caudalmiddlefrontal (RcMFG), R.isthmuscingulate (RIstCinG), R.inferiorparietal (RIPG), R.parahippocampal (RPHG), L.precentral (LPreCG), L.paracentral (LParaCG), L.supramarginal (LSMG), L.lateraloccipital (LLatOG), L.parahippocampal (LPHG), R.paracentral (RParaCG), R.postcentral (RPostCG), R.pericalcarine (RPeriCaL), R.amygdala (RAmy), L.accumbensarea (LAccu), L.amygdala (LAmy))

ROI# HGA ROI# CN.1 ROI# CN.2 ROI# CN.RAND
26 RSFG.7 32 RPreCG.2 25 RSFG.6 38 RParaCG.2
33 RPreCG.3 36 RPreCG.6 27 RSFG.8 47 RPostCG.3
57 RSPG.4 56 RSPG.3 29 RcMFG.2 55 RSPG.2
78 RLatOG.3 76 RLatOG.1 44 RIstCinG.1 65 RIPG.5
79 RLatOG.4 77 RLatOG.2 58 RSPG.5 74 RPeriCaL1
80 RLatOG.5 83 RLinG.3 65 RIPG.5 77 RLatOG.2
84 RFusG.1 86 RFusG.3 66 RIPG.6 81 RLinG.1
85 RFusG.2 89 REntRG.1 81 RLinG.1 93 RITG.3
87 RFusG.4 95 RMTG.1 82 RLinG.2 94 RITG.4
94 RITG.4 96 RMTG.2 88 RPHG.1 115 RAmy
120 LparsOrb.1 117 LLatOrbFG.2 93 RITG.3 116 LLatOrbFG.1
124 LparsTri.1 119 LLatOrbFG.4 97 RMTG.3 129 LrMFG.3
128 LrMFG.2 127 LrMFG.1 118 LLatOrbFG.3 134 LSFG.2
130 LrMFG.4 129 LrMFG.3 125 LparsOp1 135 LSFG.3
132 LrMFG.6 133 LSFG.1 126 LparsOp2 136 LSFG.4
138 LSFG.6 141 LSFG.9 131 LrMFG.5 139 LSFG.7
140 LSFG.8 142 LcMFG.1 135 LSFG.3 142 LcMFG.1
158 LPostCinG.2 157 LPostCinG.1 137 LSFG.5 157 LPostCinG.1
159 LIstCinG.1 165 LPostCG.6 144 LcMFG.3 177 LSPG.6
166 LPostCG.7 180 LIPG.2 152 LPreCG.8 182 LIPG.4
174 LSPG.3 183 LIPG.5 154 LParaCG.2 188 LPC.5
179 LIPG.1 186 LPC.3 170 LSMG.4 201 LFusG.2
203 LFusG.4 201 LFusG.2 173 LSPG.2 217 LSTG.1
209 LITG.3 205 LEntRG.1 194 LLatOG.4 218 LSTG.2
210 LITG.4 212 LMTG.2 200 LFusG.1 220 LSTG.4
211 LMTG.1 217 LSTG.1 204 LPHG.1 221 LSTG.5
213 LMTG.3 219 LSTG.3 208 LITG.2 222 LTransTG.1
223 LIns.1 222 LTransTG.1 220 LSTG.4 231 LAccu
226 LIns.4 225 LIns.3 224 LIns.2 233 LAmy

Network-level differences in hubness and segregation of HGA-memory regions and neighboring control nodes (region-effect), and between patients and controls (group-effect)

At a network level, HGA-memory regions had a lower AvgBC compared to CNs (HGA-memory region vs. CN.1--, F’s>14.16, FDR-p’s <3.4×10−3; HGA-memory region vs. CN.2 -- F’s> 20.16, FDR-p’s <2.8×10−4; HGA-memory region vs. CN.RAND -- F’s> 23.63, FDR-p’s <6.6×10−6. The df’s for each comparison=72). Neither the main effect of the group nor the interaction between group and region was significant.

Patients had a lower AvgCC compared to controls (Patient vs. Controls for HGA-memory region vs. CN.1: F’s> 8.2827, FDR-p’s<0.004; Patient vs. Controls for HGA-memory region vs. CN.2: F’s> 7.1628, FDR-p’s <0.0088; Patient vs. Controls for HGA-memory region vs. CN.RAND: F’s> 8.1457, FDR-p’s <0.007. The df’s for each comparison = 72). Neither the main effect of the region (HGA-memory region vs. CN.1, CN.2, and CN.RAND), nor the interaction between group and region was significant (Figure 3).

Figure 3: Network-level ANOVAs on AvgCC and AvgBC testing group-by-region effects:

Figure 3:

Composite network level (AvgCC and AvgBC) differences in HGA-memory regions and CN (region-effect) between patients (PAT) and controls (CON) (group-effect). Panels A, B, and C show network segregation (AvgCC) was lower in patients compared to controls (* - indicates a significant main effect of the group). Panels D, E, and F show hubness (AvgBC) of the HGA-memory network (HGA) was lower compared to their neighboring control nodes (CN.1, CN.2, and CN.RAND) (* - indicates the significant main effect of the region). The * indicates that the main effects of AvgCC and AvgBC were significant across network thresholds (sparsity levels from 5-50%). The yellow inset provides a magnified view of the difference in the AvgBC in the mid sparsity range.

Nodal-level differences in segregation and hubness of the HGA-memory regions and neighboring control nodes (region-effect), and between patients and controls (group-effect)

The above network-level analyses made clear that hubness differed between the HGA-memory regions and CNs irrespective of group, while segregation differed between the groups irrespective of regional differences. Because such effects may hide differences at a nodal level. We applied similar ANOVAs to BC and CC estimated at the nodal level (NodalBC and NodalCC respectively).

NodalBC was lower in HGA-memory region compared to CNs involving the left rostral middle frontal gyrus indicating a significant region effect. The main effect of group and the group-by-region interaction was not significant (Table 3).

Table 3: ANOVAs on NodalCC or NodalBC testing group-by-region effects.

NodalCC showed significant group-effect (patients had a lower NodalCC compared to controls irrespective of whether they were HGA-memory regions or CNs). NodalBC showed significant region-effect (HGA-memory regions had lower NodalBC compared to CNs). (Regions of interest (ROIs), Clustering coefficient (CC), Betweenness Centrality (BC), HGA-High gamma activity memory regions, Controls Nodes (CN). (F statistic of ANOVA (Fs), df= degrees of freedom, p values of ANOVA corrected for false discovery rate (pFDR), R.lateraloccipital (RLatOG), R.fusiform (RFusG), L.inferiortemporal (LITG), L.superiorparietal (LSPG), L.rostralmiddlefrontal (LrMFG)).

MAIN EFFECTS
NodalCC (Significant group-effect: Patient vs. Control) Fs (df) FDR-p’s
RLatOG.3 >5.9921 (72) <0.0057
RLatOG.4 >4.7211 (72) <0.0062
RFusG.1 >4.1904 (72) <0.0277
RFusG.2 >4.5526 (72) <0.0300
LSPG.3 >4.3929 (72) <0.0044
LITG.4 >4.2426 (72) <0.0136
NodalBC (Significant region-effect: HGA vs. CN)
LrMFG.4 >4.4909 0.0004

NodalCC was reduced in patients compared to controls across regions involving left caudal middle frontal gyrus, left inferior parietal gyrus, left precuneus, right fusiform, and lateral occipital gyri of the HGA-memory region indicating a significant group effect (Table 3). Neither the main effect of the region nor the group-by-region interaction was significant.

HGA-memory network decomposition among the established intrinsic networks

The HGA-memory network had a diverse “membership”, sharing only modest overlap with any single intrinsic network, involving a complex set of cognitive and sensorimotor processes involved in effective memory encoding. The HGA-memory network comprised 16% of TN, 12% of FPN, 14% of DAN, and 13% of COpN, amounting to a large 55% membership in cognitive control systems (Figure 4A). This stands in contrast to very limited membership of 15% with DMN, 6% with SMN, and 24% with VIN (Figure 4A). The HGA-memory network ranked 4th (AvgBC: 200±42) against the 9 intrinsic networks and differed significantly from all but one in AvgBC (Figure 4B) (Appendix B, C).

Figure 4: Nature of hubness of the HGA-memory network.

Figure 4:

(A) Pie-graph shows percent contribution of each intrinsic network to the HGA-memory network. The HGA-memory network appears to be a diverse, composite network with contributions from other networks (B) HGA-memory network had a BC value distinct from all other intrinsic networks except the SMN (inset, post-hoc comparisons between the networks in the same order as the bar graph). DMN and the FPN, which form the core hubs in the brain had the highest AvgBC values. In fact, with the exception of the DMN, all the networks display BC values distinct from at least 5 of the other networks. (C) shows the difference in BC of HGA member ROIs of an intrinsic network compared to BC of the other nodes (non-HGA) in the same network [HGA_COpN vs. Other_COpN, t= −3.47, p= 5.2*10-4 and HGA_FPN vs. Other_FPN, t= −3.63, 2.9*10-4). (D) Shows the participation coefficient (PC) of the HGA-memory network in comparison with the different intrinsic networks. The highlighted yellow area shows the similarity of HGA-memory network to TN and DMN. Each black horizontal line indicates the networks that had a different AvgPC compared to HGA-memory network following a pairwise comparison. (* - FDR corrected P-value for alpha set at 0.05, AvgBC-Average betweenness centrality of each network, AvgPC-Average participation coefficient of each network, TN-temporal network, VIN-visual integrated network, SMN-sensorimotor network, DAN – dorsal attention network, COpN – cingulo-opercular network, FPN-frontoparietal network, DMN – default mode network, ‘HGA_’ prefix – nodes of an intrinsic network that are part of HGA-memory network, ‘Other_’ prefix – nodes of an intrinsic network that are not a part of HGA-memory network).

The BC of ROIs of an intrinsic network that contributed to the HGA-memory regions differed from those that did not form a part of the HGA memory network. We found reliable differences only for the FPN (HGA_FPN vs. Other_FPN: t=−3.63, df=1, p=2.9×10-4) and COpN (HGA_COpN vs. Other_COpN: t=−3.47, df=1, p=5.2×10-4), in each case revealing higher BC for the regions of intrinsic networks not part of the HGA-memory network (Figure 4C). Accordingly, the BC levels of HGA-memory regions involved in intrinsic networks (e.g., HGA_COpN and HGA_FPN) can be said to differ from the non-memory regions of these intrinsic networks (Other_COpN, Other_FPN). A two-way ANOVA on these significant difference in the two networks showed that while the main effect of regional HGA status was significant (HGA_FPN vs. Other_FPN: F=19.53, df=3, p=1.9 ×10-5; HGA_COpN vs. Others_COpN: F=12.56, df=3, p=0.001), neither the main effect of group (patient vs. control) nor the group-by-network interaction was significant (Figure 5). The major finding was that cognitive control networks have a higher BC compared to the HGA-memory and primary processing networks.

Figure 5: ANOVA comparing the effects of networks and subject groups for significant networks.

Figure 5:

The BC levels of HGA-members of intrinsic networks (HGA_COpN and HGA_FPN) differed from the remaining regions of a given intrinsic network (Other_COpN, Other_FPN). To determine if this effect was related to a patient vs. control group difference, we ran a two-way ANOVA. For both the CopN and FPN, the HGA-memory regions still differed from those regions not in the HGA memory network, even after accounting for the group difference. (A) The main effect of BC of HGA_COpN was lower than Other_COpN (F=12.56, p=0.001), while the main effect of group (patients vs. controls) was not significant (F=1.33, p=0.25), nor was the interaction between the group and HGA memory status (F=0.15, p=0.69). (B) The main effect of BC of HGA_FPN was lower than Other_FPN (F=19.53, p=1.9*10-5), while the main effect of group (patients vs. controls) was not significant (F=0.27, p=0.65), nor was the interaction between the group and HGA memory status (F=0.09, p=0.76).

Inter-network interaction using PC revealed that the cognitive control networks and the HGA-memory network have higher AvgPC compared to the primary processing networks (Figure 4D, Appendix D). Importantly, the HGA-memory network possessed AvgPC levels similar to TN and DMN. The AvgPC of the cognitive control networks (FPN, COpN, DAN) was significantly higher than the HGA-memory network (Figure 4D, Appendix D).

Multivariate machine learning to test the association of verbal-memory performance in epilepsy patients

As a final step, we tested if either hubness or segregation were relevant to an individual’s clinical memory performance. Though the two memory scores were clinically related (CVLT-TL, total recall across five trials and P.REC, the average percent recall across all trials), they were not collinear (r=0.27, p=0.12) and hence dealt with in two different RF models. The NodalBC of 4 HGA-memory regions significantly predicted CVLT-TL performance (Figure 6A: NodalBC of ROI 1 and 2 of RFusG, LITG, and LSFG). The prediction response of this non-linear regression RF model was significant, as we found that actual CVLT-TL scores were correlated with the predictions made with the four HGA-memory NodalBC predictors (r=0.8, p=2.04×10−8) (Figure 6A, inset). Among the 4 predictors, a stepwise regression model built with NodalBC of RFusG2 and LSFG6 emerged as significant (F=10.599, df=2, p=<0.0001: RFusG2: beta= −0.53, t=−3.7, p=0.001, VIF=1.52; LSFG6: beta=0.47, t=3.27, p=0.003, VIF=1.02).

Figure 6: Random Forest Models to establish a relationship between hubness and verbal-memory performance:

Figure 6:

Random forest models help establish both linear and non-linear relationships between predictors and response. (A) BC of the HGA-memory regions were used to predict CVLT-TL. The BC of the HGA-memory regions were sorted in the descending order of their Variable Importance. LITG, LSFG, and RFusG were significantly associated with the CVLT-TL performance (inset-prediction of CVLT-TL performance made with BC of the HGA-memory regions. (B) BC of the HGA-memory regions were used to predict P.REC. The BC of the HGA-memory regions were sorted on the basis of the probability of prediction based on 1000 permutations of the RF model. LIstCingG, LrMFG, LITG, LIns, RLatOG, and RPreCG were significantly associated with P.REC memory performance. Inset shows the prediction of P.REC performance during IEEG monitoring made with BC of the HGA-memory regions. Measures exceeding beyond the blue line (the blue line indicates the p<0.05 threshold, below which none are considered significant). California verbal learning test (CVLT), number of times selected in the RF model (N), Betweenness Centrality (BC), High-Frequency Activity (HGA), correlation coefficient (r), probability value (p).

Similarly, the NodalBC of 6 HGA-memory regions significantly predicted the P.REC performance (NodalBC of LIstCinG, LrMFG, LITG, LIns, RLatOG, and RPreCG) (Figure 6B). P.REC was correlated with the predictions made with these six NodalBC measures (r=0.88, p=2.14×10−11; Figure 6B, inset), indicating that the RF model was accurate. A regression model testing the six predictors with P.REC produced no significant predictors.

In the RF models with the NodalCC of HGA-memory regions as predictors, none of the NodalCC measures were deemed significant in >95% of the permutations. Thus, none of these variables demonstrated a reliable ability to predict either P.REC or CVLT-TL performance. This modeling work established that resting-state hubness of the HGA-memory regions not only predicted the verbal-memory performance during the IEEG testing but also baseline levels of neuropsychological memory. Regional segregation showed no relation to either of these memory performances.

DISCUSSION

A fundamental question in network neuroscience regards the specific relationship between intrinsic network architecture and task-defined regional brain activity. Thus, the goal of this study was to focus on the understanding of the network features that underlie and support memory functionality, particularly when such functionality is defined through a regionally limited and sparse technology such as IEEG. We demonstrated that by integrating spectral markers of memory encoding (HGA) with rsfMRI data, one can identify network features of an IEEG-derived verbal-memory network. This method also allowed us to reveal the diversity of memory encoding operations by revealing the contributions of multiple functional networks to successful memory. Given the inherent presence of a diseased sample when using IEEG data, we tested the generality of our findings by determining if the observed memory encoding network characteristics, as embedded in resting-state data, were similar in patients and healthy controls. To assess the clinical validity of these memory network characteristics, we tested whether these characteristics were associated with actual, baseline verbal-memory performance. In summary, with a combined IEEG-rsfMRI approach, we were able to lay out the network characteristics and multifaceted intrinsic cognitive components associated with successful verbal-memory encoding.

The data demonstrate that BC, a measure of hubness, as opposed to CC, a measure of segregation, is important for driving memory-encoding networks toward successful recall. Studies have indicated that in the human brain, the highest hub scores localize in the DMN and FPN (Power JD, et al., 2013;van den Heuvel MP et al., 2013). (Cole MW et al., 2013;van den Heuvel MP, et al., 2013), a finding consistent with our data. Compared to these dominant networks in the brain, we found that the HGA-memory network had a lower hub score, but nonetheless a level of hubness that sustained and supported successful memory encoding during IEEG testing. The apparent lower hub score for the HGA-memory network (i.e., AvgBC of HGA-memory network vs. CN), appeared to emerge from the fact that the control nodes with which they were compared were located in regions with hierarchically higher hub scores. While there have been studies showing the hippocampus to be a part of the brain’s hub architecture (Van Den Heuvel MP et al., 2011), there has been no study outside of this current data to show, one, the distinctiveness of the hub score (AvgBC) of a memory network and, two, it’s standing relative to the hubness values of other cognitive control networks. The hubness value of the HGA-memory network was not related to the presence of epilepsy and was obtained in the setting of normative baseline memory scores. As a point of contrast, we show that the patients and healthy controls differed with respect to the regional segregation (CC) of both the HGA-memory network and their neighboring control nodes. This segregation effect appeared to be a consequence of epileptic pathophysiology, a finding consistent with the previous literature (Haneef Z et al., 2014).

Nodal hubness and segregation mirrored the above composite network findings. During the estimation of memory encoding during IEEG testing, we excluded electrodes and regions that were a part of the clinically hypothesized epileptogenic zone in order to avoid the effect of epileptic interictal and ictal discharges on the estimation of HGA-memory regions, both in terms of affecting a patient’s ability to encode words, as well as the power changes related to the epileptic discharges in IEEG data. This is in accord with previous studies which have shown that significantly altered BC localized and lateralized to the epileptogenic regions in both IEEG and rsFC (Haneef Z, et al., 2014;Wilke C et al., 2011). Excluding those regions from analysis helped establish that the region-effects we observed at both the network level (AvgBC) and nodal level (NodalBC) were, indeed, associated with successful encoding. Note, in the setting of intact CVLT-TL performance, the appearance of regional AvgBC effects points to the likelihood that the various HGA-memory regions work in unison to maintain the integrity of verbal-memory encoding. The positive relationship we observed in the RF model between task-positive, cognitive control regions, and stronger memory performance is evidence of the way cognitive control benefits memory. The negative relationship seen between some NodalBC values and memory performance is less clear. On this point, there is literature showing that the areas involved in the early stages of memory encoding such as the ventral attention stream (i.e., RFUSG2) may be de-activated later in the memory encoding process (Burke JF, et al., 2015). Unfortunately, the low temporal resolution of rsfMRI would blur and be insensitive to this shift in activity, potentially leading to a negative correlation.

To clarify further the nature of the HGA-memory hubness findings, we compared the BC of the HGA-memory network to well-known intrinsic networks. In work utilizing network controllability measures, Gu and colleagues (Kauffmann L et al., 2015) argued that the controllability of each of the intrinsic networks is unique. Applying this concept to the hubness results, we did see that the different cognitive networks operated at different hubness levels even in the resting-state among the same networks examined by Gu et al. 2015.

Importantly, we noted that the membership of different intrinsic networks in the HGA-memory network makes clear that the HGA-memory network utilizes a diverse set of intrinsic functionalities to drive successful verbal-memory encoding. The HGA-memory network has major membership (55%) from cognitive control systems that call upon attentional resources (DAN), lexical/semantic processing and memory consolidation (TN), and top-down control of executive functions (FPN, trial-specific control and selective attention; COpN, control of overall task goals and error monitoring) (Vaden KI, Jr. et al., 2013). Interestingly, we found that the HGA-memory regions that share membership with the intrinsic networks tend to operate at the same level of hubness as other constituents of the intrinsic network, with the exception of FPN and COpN networks (Figure 4c). These members of the HGA-memory network had a lower BC. (Sheffield JM et al., 2015). Other HGA-memory regions, utilizing cognitive processes that are part of other intrinsic networks, appear to operate at hubness levels that are comparable and optimal for the intrinsic networks as a whole (Figure 4c). Thus, our data indicates that effective memory encoding is not dominated by a central cognitive core, but is the result of a diverse set of componential functions distributed across multiple intrinsic networks, largely involving task-positive networks, all toward the goal of maximizing subsequent recall. This distribution across multiple regions is likely reflective of adaptive “associative” encoding, consistent with the extensive literature showing that recruitment of multiple cognitive and sensory processes is a crucial feature of an effective memory (Cowan N, 2017;Tulving E et al., 1996).

In order to go beyond a basic demonstration of the functional diversity of the HGA-memory network through data showing regional overlap, we investigated the interaction of the HGA-memory network with the different intrinsic brain networks. Participation coefficient analysis showed that regions of the HGA-memory network connect and interact with a diverse set of cortical regions and intrinsic networks, participating at a level higher than the primary processing networks (i.e., VIN, AN, SMN), comparable and equivalent to the other episodic memory networks (TN and DMN), but at a level lower than the cognitive control networks. The latter likely arises from the fact that cognitive control is applied to attention, language, visual-spatial, and motor functions, not just memory. Such data make clear that the HGA-memory network interacts intensively with both the other types of memory networks and the cognitive control networks, demonstrating that these interactions play a major role in achieving effective verbal memory encoding.

Lastly, we verified through RF modeling that the hubness of selected HGA-memory regions were significantly associated with both baseline verbal-memory performance (CVLT-TL) and successful recall during simultaneous IEEG-memory encoding (P.REC). The regions found to be predictive of memory performance are consistent with literature showing language and executive function processes (working memory, attention) mediate memory encoding, with such processes bringing semantic associations to bear during memory engram formation or utilizing a “central executive” to manipulate incoming information in working memory (Gutchess AH et al., 2005). Thus, similar to the data looking at the overlap with the intrinsic networks, the RF model pointed to the multivariate nature of memory encoding. Indeed, learning during the trials of the CVLT can be achieved through auditory attention and very short-term “holding” and covert verbal recitation of the information, i.e., good performance does not require long-term memory storage. The fact that this involved mostly left as opposed to right hemisphere regions could potentially point to a material-specific effect related to the word lists and covert verbal processing (Campoy G, 2008;Cowan N, 2008). The RF method produced a more sensitive and complex model of the relationship between hubness and memory performance, likely stemming from the fact that stepwise-regression only detects linear, not non-linear relationships. Overall, our data show that the hubness of regions matters more than segregation for the prediction of both baseline verbal-memory encoding abilities and successful recall following periods of HGA-associated memory encoding activity.

The two modalities we use, IEEG and rsfMRI, measure two biologically and technically unrelated signals (the direct activity of neuronal ensembles and metabolic-rate-driven synchronous fluctuations in cerebral-blood-flow, respectively), each based on very different spatio-temporal scales. There are multiple advantages of a method that uses IEEG HGA derived memory regions in individual subjects, and transforms them into a group-level whole-brain intrinsic functional connectivity map. First, from a statistical viewpoint, isolating HGA-memory regions allowed us to avoid, in both the inter- and intra-group comparisons, a large number of brain regions that are unassociated with memory encoding, reducing the chances of Type I error. The multiple comparisons performed in this study were restricted to the 29 regions with their corresponding controls regions, as opposed to correcting for ROIs of the entire Lausanne’s atlas. Second, the method of building a ‘Super-Brain’ allowed us to take advantage of the fine-grained temporal sequencing of cognitive events in IEEG, and reduce but not eliminate the problem of sparse spatial sampling. The use of a ‘Super Brain’ is widely established in cognitive studies to map reliable networks associated with memory encoding and retrieval (Greenberg JA et al., 2015;Kragel JE, et al., 2017). Third, IEEG is a spatially constrained investigative modality (i.e., sparse sampling). However, integration of the data with a modality such as rsfMRI allowed for evaluation of function throughout the brain even if patients were not implanted in those regions. This advantage has been exploited in previous studies involving isolation of the epileptogenic zone (Aghakhani Y et al., 2015), and in establishing task-related BOLD-gamma relations (Esposito F et al., 2013). Fourth, this type of integration opened up the door to studying the correspondence between BOLD signal changes and different frequency ranges, along with their linked behavioral activity. Indeed, linkages between neuronal synchrony and cognitive functions may be highly specific to the frequencies in which they occur. For instance, sensorimotor functions are regulated by beta synchrony (Brovelli A et al., 2004), and the correspondence between BOLD response and visual and auditory IEEG activity is regulated by alpha synchrony. Among the many different frequencies that can be studied in the IEEG, there has consistently been a close correspondence of the gamma band component of the local field potentials in the cerebral cortex with the BOLD signal for different motor, sensory and cognitive neuronal functions (Lachaux JP et al., 2007). Our results are certainly another example of this correspondence.

A handful of studies have performed network analysis directly on memory task-IEEG signals, studying the network synchrony present during encoding process (Burke JF, et al., 2013;Solomon EA, et al., 2017;Vecchio F et al., 2016). Such studies have emphasized different properties of the gamma band-width, including spectral power changes, phase-locking value, and exact low-resolution topographical analysis (eLORETA). These studies have found that increased gamma spectral power, asynchronous gamma oscillations coupled with synchronous theta and increased gamma-smallworldness, were associated with better verbal and non-verbal episodic memory performance. Solomon et al., examined high gamma during verbal-memory and observed both synchronous and asynchronous activity. They found that regions in frontal, temporal, and medial temporal lobe cortex asynchronous with other regions, displayed a high level of connection strength, implying a high level of centrality or hubness within the memory network, a finding consistent with the current results (Solomon EA, et al., 2017). We show that through repetitive processes of memory encoding, gamma activity can establish synchrony to the point that even slow-moving resting-state BOLD fluctuations reflect their network impact. This network impact can be best characterized as establishing a level of hubness distinct from other intrinsic networks, yet spatially overlapping them, particularly those involved in cognitive control. In the first study of its kind, applying an integrated IEEG-fMRI method, we have shown that established markers of memory encoding correspond to meaningful network differences captured by rsfMRI. In clinical terms, knowing a region is a hub, playing an important role in multi-regional and multi-functional connectivity, may inform technologies trying to identify the most effective targets to electrically or pharmacologically stimulate for cognitive enhancement in areas such as memory (Ezzyat Y et al., 2017;Ezzyat Y et al., 2018;Kucewicz MT et al., 2018), or perhaps be used to identify the areas with sufficient influence over targets to generate effective neuro-feedback loops (Hohenfeld C et al., 2017;Murphy AC et al., 2017). Lastly, in the setting of clinical disorders such as epilepsy, knowledge of the broader functional network in which a given region is embedded, both its proximity to the epileptogenic (Horak PC et al., 2017;Towgood K et al., 2015), and the degree to which it operates as a core hub of the functional network, may contribute to the risk/benefit calculus of resecting a region, essentially allowing clinicians to better account for the network context and behavioral/cognitive impact of surgery.

In terms of the limitations of this study, the hippocampus was not significant for SME because it was found that in 11 of 37 subjects hippocampal electrodes were excluded from analysis as they were part of the epileptogenic zone, though they constitute an important part of the episodic memory network. Electrodes with higher epileptiform activity from regions such as the hippocampus, which is known to be involved episodic memory, were not included in the analyses, and the few electrodes that remained in these regions were not statistically significant for HGA (Yarkoni T et al., 2011). Note, the clinical memory performance of this cohort of patients was within the normal range making the point that while the hippocampus is a crucial structure in memory encoding, it’s actually the entire network associated with encoding that maintains the integrity of the function. We also want to acknowledge that there are a large number of network centrality measures, each with their own sensitivities to aspects of network architecture. Betweenness centrality has the assumption that short paths lengths are an important part of centrality, and that a region inter-connecting or “between” the separate modules is important, leaving open the question as to whether the BC hub itself is actually densely connected. Lastly, our capture of memory effects was limited to a specific band, 44-100Hz, corresponding to neural oscillations of a duration of ~22-10ms. Human cortical gamma activity has been extensively studied in various cognitive activities over a wide range of 30-150Hz, corresponding to a broader set of neural oscillations of time duration ~33.3-6.6ms (Kucewicz MT, et al., 2017;Ray S et al., 2008;Struber M et al., 2017). However, the power of the signal as one reaches higher frequencies starts to drop, resulting in less synchronized long-distance networks while regional increases in that frequency range might still be significant. Hence networks in gamma range and above are more likely to constitute widespread asynchronous networks (Solomon EA, et al., 2017). Given our data showing that memory-related asynchronous high gamma activity can be reliably mapped to resting state functional connectivity, future studies should focus on the whole brain network changes associated with other frequency bands, such as synchronous theta networks or gamma activity greater than 100Hz and compare multiple bandwidths (i.e., not just high frequency but also, for example, low frequency theta synchrony) for their association with human memory (Khursheed F, et al., 2011;Solomon EA, et al., 2017). In view of such evidence, recent studies have explored in detail the nature of subtle variations within the gamma range showing that it constitutes true gamma oscillations and broadband power changes but a meaningful cut-off point between the different frequencies is unclear (Kucewicz MT, et al., 2017;Self MW et al., 2016). Overall, gamma activity does group into two categories of narrowband, which tends to originate from coordinated oscillations in synaptic field potential and broadband, originating from synchronized multi-unit firing, with no clear frequency boundaries separating them (Kucewicz MT, et al., 2017). Due to this variability in the origin of gamma activity in the brain, research today has been very unclear in defining a consistent range of gamma frequency, though one potential all-encompassing definition of a gamma activity would be 30-150Hz, with 30-80Hz being representative of gamma oscillatory activity (Chen G et al., 2017;Sohal VS et al., 2009). In order to avoid defining idiosyncratic frequency bands and reduce heterogeneity across studies, Fitzgerald et al, 2018, pragmatically suggest using dozens of logarithmically-spaced frequency bins spanning from 1-200 Hz (Fitzgerald PJ et al., 2018;Watson BO et al., 2018).

Studies with integrated ECoG-fMRI analysis in cognitive functions have shown that activity in frequencies greater than 100Hz can also correlate with BOLD changes. For instance, Babajani-Feremi et al. demonstrated good spatial correspondence between gamma activity (50-119Hz) and fMRI language mapping(Babajani-Feremi A et al., 2016). Jacques et al. demonstrated sustained high correlation between fMRI and high frequency broadband (HFB) ECoG responses (30-160 hz) measured in ventral temporal cortex was associated with rapid and accurate visual recognition (Jacques C, et al., 2016). Such studies make it imperative for us to understand what component of the gamma activity correlates with the BOLD response, in its role as a surrogate measure for neurovascular coupling. Logothetis et al, systematically demonstrated that BOLD activations are related to local field potentials originating from dendro-somatic components of the input signals of a neural population over a couple of millimeters as well as multiunit activity recorded over a couple of micrometers (Logothetis NK, 2003;Logothetis NK, et al., 2001). Such analysis of neurovascular mechanisms, which extend beyond the reach of our current data, can give us a wider understanding of the working of human brain in health and in disease. In some sense, our data can be seen as issuing an imperative regarding the importance not just of investigating and comparing multiple bandwidths for their association with cognition, but also to then integrate such findings with whole brain connectivity and networks so as to elucidate the full brain and cognitive impact of IEEG-defined regional functionalities.

In conclusion, the present study establishes that IEEG integrated with rsfMRI is a useful method for establishing the network characteristics associated with cognitive processes such as verbal-memory encoding, showing that repetitive gamma activity can establish synchrony to the point that slow-moving resting-state BOLD fluctuations reflect their network impact. The HGA-memory network operates at distinct hubness levels and interacts with other intrinsic networks, all toward the goal of maximizing subsequent verbal recall. Importantly, our results clarify the conditions of the baseline, tonic state that supports effective, phasic, task-dependent memory encoding. This trait-like network feature holds true for both epilepsy patients and healthy controls. This diversity is potentially available as a source of compensatory reorganization in the setting of specific diseases such as epilepsy.

Highlights.

  1. High-gamma memory activity in IEEG corresponds to specific BOLD changes in resting-state data.

  2. HGA-memory regions had lower hubness relative to control brain nodes in both epilepsy patients and healthy controls.

  3. HGA-memory network displayed hubness and participation (interaction) values distinct from other cognitive networks.

  4. HGA-memory network shared regional membership and interacted with other cognitive networks for successful memory encoding.

  5. HGA-memory network hubness predicted both concurrent task (phasic) and baseline (tonic) verbal-memory encoding success.

Acknowledgment

The authors thank the Epilepsy Monitoring Unit their help in data acquisition. We thank Dr. Dorian Pustina for his help with the machine learning strategy. The authors thank all the healthy controls and patients with epilepsy, whose data was used for this study. This work was supported, in part, by the DARPA Restoring Active Memory (RAM) program (Cooperative Agreement N66001-14-2-4032) to JK, YE, MS, AD, and JIT. JIT also acknowledges partial support from NIH 1R01NS112816-01. The views, opinions, and/or findings contained in this material are those of the authors and should not be interpreted as representing the official views or policies of the Department of Defense or the U.S. Government.

Abbreviations

HGA

High-gamma activity

CN

Controls Nodes

P.REC

Percentage of words recalled during IEEG memory testing

CVLT

California Verbal Learning Test

IEEG

Invasive Electroencephalography

BC

Betweenness Centrality

CC

Clustering Coefficient

PC

Participation Coefficient

Appendix

A. Clinical profile of the DRE patients included in the study:

A total of 37 patients were recruited for the study. Their complete clinical profile including chronological age, age of onset of epilepsy, gender, seizure types, MRI pathology lateralization and localization, interictal and ictal scalp EEG findings, site of IEEG implantation, IEEG localization of the electrical abnormality and the subsequent surgical procedure undertaken (if any) are detailed in Table 1.

# Age at study (Age at seizure onset), yr Gender AEDs at study Seizure types Anatomical MRI findings Interictal Scalp EEG Ictal scalp EEG IEEG placement IEEG findings Surgery

1 28.5(7) F LTG, LVA, DZP, CZP FIAS, BTCS R F DVA Nil R F onset R F, L F R F motor cortex R F parasagittal resection
2 34.5(32) F PGB, TPM FAS, FIAS, BTCS N B/L FT spikes, sharp and slow waves R midT onset R FTP, L T R subT onset Extended right ATL
3 24.7(20) M LVA FAS, FIAS, BTCS N R T spikes R T onset R TF, L TF R T neocortical onset R ATL AH
4 49.3(40) F LTG, PHT FAS, FIAS, BTCS L F cavernous angioma L FT sharp waves L antT onset L FTP, L Ins L F and Ins onset Cavernoma resection and insular focus resection
5 20.6(16) F VPA, LCM FIAS, BTCS B/L PNH B/L T spikes Unclear R F, L HG FT L T widespread onset Ablation of heterotopia
6 28(19) F LVA, OXC, FAS, BTCS R F DVA L FC spikes Unclear L F L F onset left frontal lobe resection with MST
7 28.2(20) M LVA, LCM FIAS L med-post FP gliosis, R MTS R T spikes, sharp waves R neocortical T onset L postF, R T R T onset R ATL AH
8 20(15) F VPA, LCM FIAS, BTCS N B/L T sharp waves R ant-midT onset R FT, R TO 2 foci: R subT onset and R orbF onset R ATL AH + neocortical resection
9 44.6(36) F LCM FAS, FIAS, BTCS L FT gliosis L T slow waves B/L independent T onset L TF, R T L T onset L ATL+AH
10 48.6(13) M TPM, LVA FIAS, BTCS N B/L Tp sharp waves Unclear R T onset R FT, L FT R F onset right frontal and parietal resection
11 44.9(40) M LVA FAS, FIAS, BTCS L Amyg bulky L T spikes B/L L > R T onset B/L FT B/L L > R independent tempral onset RNS
12 50(30) M LTG, CBZ, LCM FIAS, BTCS N B/L T spikes and sharp waves R antT onset L FT, R FT R T onset R ATL AH
13 36.4(20) M CBZ, PHT FIAS, BTCS N B/L T spikes B/L - L > R T onset B/L FT B/L L > R independent tempral onset No surgery
14 44(3) F LTG FAS, FIAS L MTS L T spikes B/L - L > R T onset B/L T B/L subT onset L ATL+AH
15 52.1(33) M LVA, LCM FIAS, BTCS R > L MTS Nil L T onset B/L T and Cin B/L R > L independent tempral onset R ATL AH
16 38(10) M PGB, LTG FIAS, N L TO spikes, sharp waves and polyspikes L O theta rhythm L FTPO and Ins (extensive) L TO, L subT onset No surgery
17 18.7(13) F LVA, CZP, GBP FAS, BTCS R T hyperintensity Nil Central rhythmic beta R FP, R Ins, L FP R SMA onset resection R SMA
18 39.2(17) F ZNS FAS, FIAS N R midT spikes Unclear R T onset R HG Amy TO R antT onset R ATL AH
19 27.8(12) M OXC, ZNS FIAS, BTCS N Unclear F spikes Unclear F onset B/L F, R orbF R F onset Right frontal lobectomy
20 33.9(20) M LVA, OXC FAS, FIAS N Nil Unclear L SMA onset R > L FP, R T R hemisphere motor and SMA onset RNS
22 49(47) F LVA, LTG,TP M FAS, FIAS N L T spikes L subT onset L HG Amy entorhina l cortex L ant-med T anset Left ATL
23 47.7(21) F ZNS, OXC FIAS, BTCS L F-Oper-Ins Encephalomal acia + L MTS L T spikes L TF onset L FT Ins and Cin L T onset L ATL+AH+frontal operculectomy
24 40.6(32) F LCM FIAS, BTCS N L TIRDA, L Tp sharp waves L T onset L FTP, R FT L T onset, R T electrograph ic seizures L ATL+AH
25 39.2(6) F ZNS, LTG, PB,CZP FIAS, BTCS L T-Ins Gliosis with ex-vacuo dilatation of the ventricles L T sharp L T onset L FT Ins L Amy, HG, and L ant-inf Ins Left ATL + Left F-OrbF corticectomy
26 34.7(19) F TPM, OXC FIAS, BTCS N L T sharp waves L T onset L FTO Ins L HG sub T sub O L ATL
27 31.3(15) M VPA, PHT FAS, BTCS N R ant-midT slowing and spikes R FT onset R FT subT TO widespread R TF neocortical onset No surgery
28 25.2(12) F LTG FIAS, BTCS N R T polymorphic delta, R antT sharp waves L > R T onset B/L FT L T onset L ATL
30 42.7(27) M ZNS, OXC FIAS N B/L T sharp waves B/L independent L > R T onset B/L T B/L independent L > R T onset No surgery
31 56.2(50) M LVA, PGB, LZP FAS, FIAS, BTCS N L T sharp waves L T pole onset L HG T orbF L antT onset LiTT
32 48.5(35) F OXC, TPM FIAS, BTCS N R T sharp wave, R FTC sharp waves, L midT spikes R ant-midT onset B/L FT R dorsolateral and F pole onset R frontal lobectomy
33 23.2(4) M LVA FAS, BTCS PRES Unclear L T onset L TP Ins Cin L HG and post Amy L ATL+AH
34 21.1(0.1) F ZNS, LTG FIAS L HG Atrophy L postT spikes R F onset B/L F T No Seizures No surgery
35 25.6(19) M LVA TPM FIAS B/L Periventricular Nodular Heterotopia L T spikes L T onset L TP, R T L deep T heterotopia onset GKRS - left-sided deep temporal heterotopia
36 45(30) F LVA LTG FIAS, BTCS N B/L independent T spikes L neocortical T onset B/L F T B/L independent T onset No surgery
37 40.4(3) F Pr, CBZ, VPA FIAS, BTCS N R mid-post T spikes R mid-postT onset B/L F T L F onset No surgery
38 51.5(38) F LCM, ZNS FIAS L med-basal antT Encephalocoel L FT spikes L ant-midT onset L HG Amy Ins Cin orbF postT TPO, R medT L F onset L ATL
39 30.3(1) M LVA CBZ FIAS, BTCS R PO Heterotopia R PO spikes R PO onset R FTPO (extensive) R deep P onset right parietal resection

#-patient number; yr-years; F=Female; M-Male; PGB-Pregabalin; LVA-Levetiracetam; VPA-Valproate; LCM-Lacosamide; TPM-Topiramate; CBZ-Carbamazepine; ZNS-Zonisamide; OXC-Oxcarbazepine; Pr-Primidone; PHT-Phenytoin; CZP-Clonazepam; DZP-Diazepam; GBP-Gabapentin; PB-Phenobarbitone; LZP-Lorazepam; FAS-Focal Aware Seizures/Simple Partial Seizures; FIAS-Focal Impaired Awareness Seizures/Complex Partial Seizures; BTCS-Focal to bilateral tonic clonic seziures; N-Normal; R-Right; L-Left; B/L-Bilateral; F-Frontal; T-Temporal; P-Parietal; O-Ocipital, C-Central; Tp-Temporopolar; HG-Hippocampal gyrus; Amy-Amygdala; Oper-Opercular; Ins-Insular; Cin-Cingulate; Orb-orbital; SMA-Supplementary Motor Area; ant-Anterior; post-Posterior; mid-middle; med-medial; sub-subjacent; DVA-Developmental Venous Anomaly; PNH-Periventricular Nodular Heterotopia; MTS-Mesial Temporal Sclerosis; PRES-Posterior Reversible Encephalopathy Syndrome; TIRDA-Temporal intermittent rhythmic delta activity

B. AvgBC of HGA-memory network in comparison with the intrinsic networks.

We noted that the HGA-memory network was a composite network involving member nodes from other intrinsic networks. We estimated how the HGA-network compared in its hubness scores to these other networks.

Multivariate Tests
Effect Value F Hypothesis df Error df Sig. Partial Eta Squared Noncent. Parameter Observed Power
Networks Wilks’ Lambda 0.24 23.06 9.00 65.00 0.00 0.76 207.55 1.00
Tests of Within-Subjects Effects
Source Type III Sum of Squares df Mean Square F Sig. Partial Eta Squared Noncent. Parameter Observed Power
Networks Sphericity Assumed 512899.13 9.00 56988.79 26.96 0.00 0.27 242.68 1.00
Greenhouse-Geisser 512899.13 6.48 79149.01 26.96 0.00 0.27 174.74 1.00
Error (Networks) Sphericity Assumed 1388546.76 657.00 2113.47
Greenhouse-Geisser 1388546.76 473.05 2935.29
Tests of Between-Subjects Effects
Source Type III Sum of Squares df Mean Square F Sig. Partial Eta Squared Noncent. Parameter Observed Power
Intercept 32135516.47 1.00 32135516.47 33397.91 0.00 1.00 33397.91 1.00

C. AvgBC of HGA-memory network in comparison with the other intrinsic networks: post-hoc results

In this table, we provide the pairwise comparisons of the AvgBC of the different networks.

Pairwise Comparisons of the BC of the HGA network
Networks Mean Difference in AvgBC Std.Error Sig. 95% Confidence Interval for Difference
Lower Bound Upper Bound
1 (TN) 2 2.62 10.13 0.80 −17.56 22.80
3 −11.18 6.85 0.11 −24.83 2.46
4 −22.502* 6.68 0.00 −35.81 −9.19
5 −27.944* 7.12 0.00 −42.13 −13.76
6 −44.223* 7.86 0.00 −59.89 −28.56
7 −64.601* 9.01 0.00 −82.56 −46.65
8 −62.433* 7.86 0.00 −78.09 −46.77
9 −63.984* 8.31 0.00 −80.54 −47.43
10 −66.221* 7.75 0.00 −81.67 −50.78
2 (VAN) 1 −2.62 10.13 0.80 −22.80 17.56
3 −13.80 8.34 0.10 −30.43 2.82
4 −25.122* 8.32 0.00 −41.71 −8.53
5 −30.564* 8.99 0.00 −48.47 −12.66
6 −46.842* 9.88 0.00 −66.54 −27.15
7 −67.220* 10.39 0.00 −87.92 −46.52
8 −65.052* 9.20 0.00 −83.40 −46.71
9 −66.603* 10.13 0.00 −86.79 −46.41
10 −68.840* 10.03 0.00 −88.82 −48.86
3 (VIN) 1 11.18 6.85 0.11 −2.46 24.83
2 13.80 8.34 0.10 −2.82 30.43
4 −11.318* 5.00 0.03 −21.29 −1.35
5 −16.760* 4.91 0.00 −26.54 −6.98
6 −33.039* 6.88 0.00 −46.76 −19.32
7 −53.417* 7.83 0.00 −69.01 −37.82
8 −51.249* 5.54 0.00 −62.28 −40.21
9 −52.800* 6.43 0.00 −65.61 −39.99
10 −55.037* 5.57 0.00 −66.14 −43.94
4 (HGA) 1 22.502* 6.68 0.00 9.19 35.81
2 25.122* 8.32 0.00 8.53 41.71
3 11.318* 5.00 0.03 1.35 21.29
5 −5.44 5.22 0.30 −15.84 4.95
6 −21.721* 6.71 0.00 −35.09 −8.35
7 −42.099* 7.14 0.00 −56.34 −27.86
8 −39.930* 5.34 0.00 −50.57 −29.29
9 −41.482* 6.17 0.00 −53.79 −29.18
10 −43.719* 5.74 0.00 −55.16 −32.28
5 (SMN) 1 27.944* 7.12 0.00 13.76 42.13
2 30.564* 8.99 0.00 12.66 48.47
3 16.760* 4.91 0.00 6.98 26.54
4 5.44 5.22 0.30 −4.95 15.84
6 −16.279* 6.59 0.02 −29.42 −3.14
7 −36.657* 7.67 0.00 −51.94 −21.37
8 −34.488* 5.89 0.00 −46.24 −22.74
9 −36.040* 6.66 0.00 −49.31 −22.77
10 −38.277* 6.23 0.00 −50.70 −25.86
6 (AN) 1 44.223* 7.86 0.00 28.56 59.89
2 46.842* 9.88 0.00 27.15 66.54
3 33.039* 6.88 0.00 19.32 46.76
4 21.721* 6.71 0.00 8.35 35.09
5 16.279* 6.59 0.02 3.14 29.42
7 −20.378* 8.04 0.01 −36.40 −4.36
8 −18.209* 7.54 0.02 −33.24 −3.18
9 −19.761* 7.29 0.01 −34.30 −5.22
10 −21.998* 7.72 0.01 −37.37 −6.62
7 (DAN) 1 64.601* 9.01 0.00 46.65 82.56
2 67.220* 10.39 0.00 46.52 87.92
3 53.417* 7.83 0.00 37.82 69.01
4 42.099* 7.14 0.00 27.86 56.34
5 36.657* 7.67 0.00 21.37 51.94
6 20.378* 8.04 0.01 4.36 36.40
8 2.17 8.11 0.79 −14.00 18.33
9 0.62 8.50 0.94 −16.32 17.56
10 −1.62 9.35 0.86 −20.26 17.02
8 (COpN) 1 62.433* 7.86 0.00 46.77 78.09
2 65.052* 9.20 0.00 46.71 83.40
3 51.249* 5.54 0.00 40.21 62.28
4 39.930* 5.34 0.00 29.29 50.57
5 34.488* 5.89 0.00 22.74 46.24
6 18.209* 7.54 0.02 3.18 33.24
7 −2.17 8.11 0.79 −18.33 14.00
9 −1.55 5.80 0.79 −13.12 10.02
10 −3.79 6.03 0.53 −15.81 8.24
9 (FPN) 1 63.984* 8.31 0.00 47.43 80.54
2 66.603* 10.13 0.00 46.41 86.79
3 52.800* 6.43 0.00 39.99 65.61
4 41.482* 6.17 0.00 29.18 53.79
5 36.040* 6.66 0.00 22.77 49.31
6 19.761* 7.29 0.01 5.22 34.30
7 −0.62 8.50 0.94 −17.56 16.32
8 1.55 5.80 0.79 −10.02 13.12
10 −2.24 6.75 0.74 −15.68 11.21
10 (DMN) 1 66.221* 7.75 0.00 50.78 81.67
2 68.840* 10.03 0.00 48.86 88.82
3 55.037* 5.57 0.00 43.94 66.14
4 43.719* 5.74 0.00 32.28 55.16
5 38.277* 6.23 0.00 25.86 50.70
6 21.998* 7.72 0.01 6.62 37.37
7 1.62 9.35 0.86 −17.02 20.26
8 3.79 6.03 0.53 −8.24 15.81
9 2.24 6.75 0.74 −11.21 15.68

D. Pairwise differences of participation coefficient (AvgPC) between the HGA-memory network and other intrinsic networks:

The HGA-memory network had a participation coefficient (AvgPC) similar to the TN and the DMN, both networks largely implicated in human memory. It was however different from other intrinsic networks. The multiple comparisons were corrected for using FDR correction (FDR p-value: 4.9278e-04).

Network Comparison t df P value
HGA - VIN 8.8362394 73 3.77736E-13
HGA - AN 4.6119862 73 1.66202E-05
HGA - SMN 4.9981859 73 3.84115E-06
HGA - VAN 3.6480565 73 0.000492783
HGA - TN −1.272799 73 0.207128054
HGA-DMN −1.277319 73 0.205537307
HGA - FPN −5.874123 73 1.1699E-07
HGA - COpN −7.870222 73 2.46829E-11
HGA - DAN −13.24204 73 4.29859E-21

Footnotes

Publisher's Disclaimer: This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.

Disclosure of Conflicts of Interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

References

  1. Aghakhani Y, Beers CA, Pittman DJ, Gaxiola-Valdez I, Goodyear BG, Federico P (2015), Colocalization between the BOLD response and epileptiform discharges recorded by simultaneous intracranial EEG-fMRI at 3 T. Neuroimage Clin 7:755–763. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Alexander-Bloch AF, Gogtay N, Meunier D, Birn R, Clasen L, Lalonde F, Lenroot R, Giedd J, et al. (2010), Disrupted modularity and local connectivity of brain functional networks in childhood-onset schizophrenia. Frontiers in systems neuroscience 4:147. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Ashburner J, Friston KJ (2005), Unified segmentation. Neuroimage 26:839–851. [DOI] [PubMed] [Google Scholar]
  4. Axmacher N, Schmitz DP, Wagner T, Elger CE, Fell J (2008), Interactions between medial temporal lobe, prefrontal cortex, and inferior temporal regions during visual working memory: a combined intracranial EEG and functional magnetic resonance imaging study. J Neurosci 28:7304–7312. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Babajani-Feremi A, Narayana S, Rezaie R, Choudhri AF, Fulton SP, Boop FA, Wheless JW, Papanicolaou AC (2016), Language mapping using high gamma electrocorticography, fMRI, and TMS versus electrocortical stimulation. Clin Neurophysiol 127:1822–1836. [DOI] [PubMed] [Google Scholar]
  6. Breiman L (2001), Random forests. Machine learning 45:5–32. [Google Scholar]
  7. Brovelli A, Ding M, Ledberg A, Chen Y, Nakamura R, Bressler SL (2004), Beta oscillations in a large-scale sensorimotor cortical network: directional influences revealed by Granger causality. Proc Natl Acad Sci U S A 101:9849–9854. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Burke JF, Ramayya AG, Kahana MJ (2015), Human intracranial high-frequency activity during memory processing: neural oscillations or stochastic volatility? Curr Opin Neurobiol 31:104–110. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Burke JF, Zaghloul KA, Jacobs J, Williams RB, Sperling MR, Sharan AD, Kahana MJ (2013), Synchronous and asynchronous theta and gamma activity during episodic memory formation. Journal of Neuroscience 33:292–304. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Campoy G (2008), The effect of word length in short-term memory: Is rehearsal necessary? Q J Exp Psychol (Hove) 61:724–734. [DOI] [PubMed] [Google Scholar]
  11. Chen G, Zhang Y, Li X, Zhao X, Ye Q, Lin Y, Tao HW, Rasch MJ, et al. (2017), Distinct Inhibitory Circuits Orchestrate Cortical beta and gamma Band Oscillations. Neuron 96:1403–1418 e1406. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Cole MW, Reynolds JR, Power JD, Repovs G, Anticevic A, Braver TS (2013), Multi-task connectivity reveals flexible hubs for adaptive task control. Nat Neurosci 16:1348–1355. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Cowan N (2008), What are the differences between long-term, short-term, and working memory? Prog Brain Res 169:323–338. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Cowan N (2017), The many faces of working memory and short-term storage. Psychon Bull Rev 24:1158–1170. [DOI] [PubMed] [Google Scholar]
  15. Esposito F, Singer N, Podlipsky I, Fried I, Hendler T, Goebel R (2013), Cortex-based inter-subject analysis of iEEG and fMRI data sets: application to sustained task-related BOLD and gamma responses. Neuroimage 66:457–468. [DOI] [PubMed] [Google Scholar]
  16. Ezzyat Y, Kragel JE, Burke JF, Levy DF, Lyalenko A, Wanda P, O’Sullivan L, Hurley KB, et al. (2017), Direct Brain Stimulation Modulates Encoding States and Memory Performance in Humans. Curr Biol 27:1251–1258. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Ezzyat Y, Wanda PA, Levy DF, Kadel A, Aka A, Pedisich I, Sperling MR, Sharan AD, et al. (2018), Closed-loop stimulation of temporal cortex rescues functional networks and improves memory. Nat Commun 9:365. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Fitzgerald PJ, Watson BO (2018), Gamma oscillations as a biomarker for major depression: an emerging topic. Transl Psychiatry 8:177. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Friston KJ, Williams S, Howard R, Frackowiak RS, Turner R (1996), Movement-related effects in fMRI time-series. Magnetic resonance in medicine 35:346–355. [DOI] [PubMed] [Google Scholar]
  20. Geller AS, Schlefer IK, Sederberg PB, Jacobs J, Kahana MJ (2007), PyEPL: a cross-platform experiment-programming library. Behav Res Methods 39:950–958. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Genovese CR, Lazar NA, Nichols T (2002), Thresholding of statistical maps in functional neuroimaging using the false discovery rate. Neuroimage 15:870–878. [DOI] [PubMed] [Google Scholar]
  22. Greenberg JA, Burke JF, Haque R, Kahana MJ, Zaghloul KA (2015), Decreases in theta and increases in high frequency activity underlie associative memory encoding. Neuroimage 114:257–263. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Gu S, Pasqualetti F, Cieslak M, Telesford QK, Yu AB, Kahn AE, Medaglia JD, Vettel JM, et al. (2015), Controllability of structural brain networks. Nat Commun 6:8414. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Gutchess AH, Welsh RC, Hedden T, Bangert A, Minear M, Liu LL, Park DC (2005), Aging and the neural correlates of successful picture encoding: frontal activations compensate for decreased medial-temporal activity. J Cogn Neurosci 17:84–96. [DOI] [PubMed] [Google Scholar]
  25. Hagmann P, Cammoun L, Gigandet X, Meuli R, Honey CJ, Wedeen VJ, Sporns O (2008), Mapping the structural core of human cerebral cortex. PLoS biology 6:e159. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Haneef Z, Chiang S (2014), Clinical correlates of graph theory findings in temporal lobe epilepsy. Seizure 23:809–818. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. He X, Bassett DS, Chaitanya G, Sperling MR, Kozlowski L, Tracy JI (2018), Disrupted dynamic network reconfiguration of the language system in temporal lobe epilepsy. Brain 141:1375–1389. [DOI] [PubMed] [Google Scholar]
  28. Hohenfeld C, Nellessen N, Dogan I, Kuhn H, Muller C, Papa F, Ketteler S, Goebel R, et al. (2017), Cognitive Improvement and Brain Changes after Real-Time Functional MRI Neurofeedback Training in Healthy Elderly and Prodromal Alzheimer’s Disease. Front Neurol 8:384. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Horak PC, Meisenhelter S, Song Y, Testorf ME, Kahana MJ, Viles WD, Bujarski KA, Connolly AC, et al. (2017), Interictal epileptiform discharges impair word recall in multiple brain areas. Epilepsia 58:373–380. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Humphries MD, Gurney K, Prescott TJ (2006), The brainstem reticular formation is a small-world, not scale-free, network. Proceedings Biological sciences / The Royal Society 273:503–511. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Jacques C, Witthoft N, Weiner KS, Foster BL, Rangarajan V, Hermes D, Miller KJ, Parvizi J, et al. (2016), Corresponding ECoG and fMRI category-selective signals in human ventral temporal cortex. Neuropsychologia 83:14–28. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Jin SH, Jeong W, Chung CK (2015), Mesial temporal lobe epilepsy with hippocampal sclerosis is a network disorder with altered cortical hubs. Epilepsia 56:772–779. [DOI] [PubMed] [Google Scholar]
  33. Kaiser M, Hilgetag CC (2006), Nonoptimal component placement, but short processing paths, due to long-distance projections in neural systems. PLoS computational biology 2:e95. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Kauffmann L, Bourgin J, Guyader N, Peyrin C (2015), The Neural Bases of the Semantic Interference of Spatial Frequency-based Information in Scenes. Journal of cognitive neuroscience 27:2394–2405. [DOI] [PubMed] [Google Scholar]
  35. Khursheed F, Tandon N, Tertel K, Pieters TA, Disano MA, Ellmore TM (2011), Frequency-specific electrocorticographic correlates of working memory delay period fMRI activity. Neuroimage 56:1773–1782. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Kragel JE, Ezzyat Y, Sperling MR, Gorniak R, Worrell GA, Berry BM, Inman C, Lin JJ, et al. (2017), Similar patterns of neural activity predict memory function during encoding and retrieval. Neuroimage 155:60–71. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Kucewicz MT, Berry BM, Kremen V, Brinkmann BH, Sperling MR, Jobst BC, Gross RE, Lega B, et al. (2017), Dissecting gamma frequency activity during human memory processing. Brain 140:1337–1350. [DOI] [PubMed] [Google Scholar]
  38. Kucewicz MT, Berry BM, Miller LR, Khadjevand F, Ezzyat Y, Stein JM, Kremen V, Brinkmann BH, et al. (2018), Evidence for verbal memory enhancement with electrical brain stimulation in the lateral temporal cortex. Brain 141:971–978. [DOI] [PubMed] [Google Scholar]
  39. Lachaux JP, Fonlupt P, Kahane P, Minotti L, Hoffmann D, Bertrand O, Baciu M (2007), Relationship between task-related gamma oscillations and BOLD signal: new insights from combined fMRI and intracranial EEG. Hum Brain Mapp 28:1368–1375. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Lega BC, Jacobs J, Kahana M (2012), Human hippocampal theta oscillations and the formation of episodic memories. Hippocampus 22:748–761. [DOI] [PubMed] [Google Scholar]
  41. Liaw A, Wiener M (2002), Classification and regression by random-Forest. Rnews 2:18–22. [Google Scholar]
  42. Logothetis NK (2003), The underpinnings of the BOLD functional magnetic resonance imaging signal. J Neurosci 23:3963–3971. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Logothetis NK, Pauls J, Augath M, Trinath T, Oeltermann A (2001), Neurophysiological investigation of the basis of the fMRI signal. Nature 412:150–157. [DOI] [PubMed] [Google Scholar]
  44. Long NM, Burke JF, Kahana MJ (2014), Subsequent memory effect in intracranial and scalp EEG. Neuroimage 84:488–494. [DOI] [PMC free article] [PubMed] [Google Scholar]
  45. Mizuhara H (2012), Cortical dynamics of human scalp EEG origins in a visually guided motor execution. Neuroimage 62:1884–1895. [DOI] [PubMed] [Google Scholar]
  46. Mizuhara H, Wang L-Q, Kobayashi K, Yamaguchi Y (2005), Long-range EEG phase synchronization during an arithmetic task indexes a coherent cortical network simultaneously measured by fMRI. Neuroimage 27:553–563. [DOI] [PubMed] [Google Scholar]
  47. Murphy AC, Bassett DS (2017), A Network Neuroscience of Neurofeedback for Clinical Translation. Curr Opin Biomed Eng 1:63–70. [DOI] [PMC free article] [PubMed] [Google Scholar]
  48. Powell HW, Richardson MP, Symms MR, Boulby PA, Thompson PJ, Duncan JS, Koepp MJ (2007), Reorganization of verbal and nonverbal memory in temporal lobe epilepsy due to unilateral hippocampal sclerosis. Epilepsia 48:1512–1525. [DOI] [PMC free article] [PubMed] [Google Scholar]
  49. Power JD, Schlaggar BL, Lessov-Schlaggar CN, Petersen SE (2013), Evidence for hubs in human functional brain networks. Neuron 79:798–813. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. Ray S, Niebur E, Hsiao SS, Sinai A, Crone NE (2008), High-frequency gamma activity (80-150Hz) is increased in human cortex during selective attention. Clin Neurophysiol 119:116–133. [DOI] [PMC free article] [PubMed] [Google Scholar]
  51. Rubinov M, Sporns O (2010), Complex network measures of brain connectivity: uses and interpretations. Neuroimage 52:1059–1069. [DOI] [PubMed] [Google Scholar]
  52. Rugg MD, Otten LJ, Henson RN (2002), The neural basis of episodic memory: evidence from functional neuroimaging. Philos Trans R Soc Lond B Biol Sci 357:1097–1110. [DOI] [PMC free article] [PubMed] [Google Scholar]
  53. Sederberg PB, Gauthier LV, Terushkin V, Miller JF, Barnathan JA, Kahana MJ (2006), Oscillatory correlates of the primacy effect in episodic memory. Neuroimage 32:1422–1431. [DOI] [PubMed] [Google Scholar]
  54. Self MW, Peters JC, Possel JK, Reithler J, Goebel R, Ris P, Jeurissen D, Reddy L, et al. (2016), The Effects of Context and Attention on Spiking Activity in Human Early Visual Cortex. PLoS Biol 14:e1002420. [DOI] [PMC free article] [PubMed] [Google Scholar]
  55. Serruya MD, Sederberg PB, Kahana MJ (2014), Power shifts track serial position and modulate encoding in human episodic memory. Cereb Cortex 24:403–413. [DOI] [PMC free article] [PubMed] [Google Scholar]
  56. Sheffield JM, Repovs G, Harms MP, Carter CS, Gold JM, MacDonald AW 3rd, Daniel Ragland J, Silverstein SM, et al. (2015), Fronto-parietal and cingulo-opercular network integrity and cognition in health and schizophrenia. Neuropsychologia 73:82–93. [DOI] [PMC free article] [PubMed] [Google Scholar]
  57. Sohal VS, Zhang F, Yizhar O, Deisseroth K (2009), Parvalbumin neurons and gamma rhythms enhance cortical circuit performance. Nature 459:698–702. [DOI] [PMC free article] [PubMed] [Google Scholar]
  58. Solomon EA, Kragel JE, Sperling MR, Sharan A, Worrell G, Kucewicz M, Inman CS, Lega B, et al. (2017), Widespread theta synchrony and high-frequency desynchronization underlies enhanced cognition. Nat Commun 8:1704. [DOI] [PMC free article] [PubMed] [Google Scholar]
  59. Solomon EA, Stein JM, Das S, Gorniak R, Sperling MR, Worrell G, Inman CS, Tan RJ, et al. (2019), Dynamic Theta Networks in the Human Medial Temporal Lobe Support Episodic Memory. Curr Biol 29:1100–1111 e1104. [DOI] [PMC free article] [PubMed] [Google Scholar]
  60. Sperling MR, O’Connor MJ, Saykin AJ, Plummer C (1996), Temporal lobectomy for refractory epilepsy. JAMA 276:470–475. [PubMed] [Google Scholar]
  61. Stam C, Tewarie P, Van Dellen E, Van Straaten E, Hillebrand A, Van Mieghem P (2014), The trees and the forest: characterization of complex brain networks with minimum spanning trees. International Journal of Psychophysiology 92:129–138. [DOI] [PubMed] [Google Scholar]
  62. Struber M, Sauer JF, Jonas P, Bartos M (2017), Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus. Nat Commun 8:758. [DOI] [PMC free article] [PubMed] [Google Scholar]
  63. Tewarie P, van Dellen E, Hillebrand A, Stam CJ (2015), The minimum spanning tree: an unbiased method for brain network analysis. Neuroimage 104:177–188. [DOI] [PubMed] [Google Scholar]
  64. Towgood K, Barker GJ, Caceres A, Crum WR, Elwes RD, Costafreda SG, Mehta MA, Morris RG, et al. (2015), Bringing memory fMRI to the clinic: comparison of seven memory fMRI protocols in temporal lobe epilepsy. Hum Brain Mapp 36:1595–1608. [DOI] [PMC free article] [PubMed] [Google Scholar]
  65. Tracy J, Pustina D, Doucet G, Osipowicz K (2014), Seizure-induced neuroplasticity and cognitive network reorganization in epilepsy. Cognitive Plasticity in Neurologic Disorders:29. [Google Scholar]
  66. Tracy JI, Lippincott C, Mahmood T, Waldron B, Kanauss K, Glosser D, Sperling MR (2007), Are depression and cognitive performance related in temporal lobe epilepsy? Epilepsia 48:2327–2335. [DOI] [PubMed] [Google Scholar]
  67. Tulving E, Markowitsch HJ, Craik FE, Habib R, Houle S (1996), Novelty and familiarity activations in PET studies of memory encoding and retrieval. Cereb Cortex 6:71–79. [DOI] [PubMed] [Google Scholar]
  68. Vaden KI Jr., Kuchinsky SE, Cute SL, Ahlstrom JB, Dubno JR, Eckert MA (2013), The cingulo-opercular network provides word-recognition benefit. J Neurosci 33:18979–18986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  69. Van Den Heuvel MP, Sporns O (2011), Rich-club organization of the human connectome. Journal of Neuroscience 31:15775–15786. [DOI] [PMC free article] [PubMed] [Google Scholar]
  70. van den Heuvel MP, Sporns O (2013), Network hubs in the human brain. Trends Cogn Sci 17:683–696. [DOI] [PubMed] [Google Scholar]
  71. van Diessen E, Diederen SJ, Braun KP, Jansen FE, Stam CJ (2013), Functional and structural brain networks in epilepsy: what have we learned? Epilepsia 54:1855–1865. [DOI] [PubMed] [Google Scholar]
  72. Vecchio F, Miraglia F, Quaranta D, Granata G, Romanello R, Marra C, Bramanti P, Rossini PM (2016), Cortical connectivity and memory performance in cognitive decline: A study via graph theory from EEG data. Neuroscience 316:143–150. [DOI] [PubMed] [Google Scholar]
  73. Watson BO, Ding M, Buzsaki G (2018), Temporal coupling of field potentials and action potentials in the neocortex. Eur J Neurosci 48:2482–2497. [DOI] [PMC free article] [PubMed] [Google Scholar]
  74. Wilke C, Worrell G, He B (2011), Graph analysis of epileptogenic networks in human partial epilepsy. Epilepsia 52:84–93. [DOI] [PMC free article] [PubMed] [Google Scholar]
  75. Yan CG, Cheung B, Kelly C, Colcombe S, Craddock RC, Di Martino A, Li Q, Zuo XN, et al. (2013), A comprehensive assessment of regional variation in the impact of head micromovements on functional connectomics. Neuroimage 76:183–201. [DOI] [PMC free article] [PubMed] [Google Scholar]
  76. Yan CG, Zang YF (2010), DPARSF: A MATLAB Toolbox for “Pipeline” Data Analysis of Resting-State fMRI. Frontiers in systems neuroscience 4:13. [DOI] [PMC free article] [PubMed] [Google Scholar]
  77. Yarkoni T, Poldrack RA, Nichols TE, Van Essen DC, Wager TD (2011), Large-scale automated synthesis of human functional neuroimaging data. Nat Methods 8:665–670. [DOI] [PMC free article] [PubMed] [Google Scholar]

RESOURCES