Figure 8:

Results of the post-sequencing quality control with HiC-Pro. One million read pairs were used for computation with HiC-Pro. See Fig. 7A for the preparation conditions of Libraries a–h, Fig. 4 for the categorization, and Supplementary Table S5 for the actual proportion of the reads in each category. The post-sequencing quality control using variable read amounts (500,000–200,000,000 pairs) for one of these softshell turtle libraries (Supplementary Table S9) and human GM12878 libraries (Supplementary Table S2) shows the validity of this quality control with as few as 500,000 read pairs.