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PLOS ONE logoLink to PLOS ONE
. 2020 Jan 29;15(1):e0227458. doi: 10.1371/journal.pone.0227458

A cross-sectional evaluation of five warfarin anticoagulation services in Uganda and South Africa

Jerome Roy Semakula 1,#, Johannes P Mouton 2,#, Andrea Jorgensen 3, Claire Hutchinson 4, Shaazia Allie 2, Lynn Semakula 1, Neil French 4, Mohammed Lamorde 1, Cheng-Hock Toh 5, Marc Blockman 2, Christine Sekaggya-Wiltshire 1, Catriona Waitt 1,4, Munir Pirmohamed 6, Karen Cohen 2,*
Editor: Joel Msafiri Francis7
PMCID: PMC6988943  PMID: 31995565

Abstract

Introduction

Warfarin is the most commonly prescribed oral anticoagulant in sub-Saharan Africa and requires ongoing monitoring. The burden of both infectious diseases and non-communicable diseases is high and medicines used to treat comorbidities may interact with warfarin. We describe service provision, patient characteristics, and anticoagulation control at selected anticoagulation clinics in Uganda and South Africa.

Methods

We evaluated two outpatient anticoagulation services in Kampala, Uganda and three in Cape Town, South Africa between 1 January and 31 July 2018. We collected information from key staff members about the clinics’ service provision and extracted demographic and clinical data from a sample of patients’ clinic records. We calculated time in therapeutic range (TTR) over the most recent 3-month period using the Rosendaal interpolation method.

Results

We included three tertiary level, one secondary level and one primary level anticoagulation service, seeing between 30 and 800 patients per month. Care was rendered by nurses, medical officers, and specialists. All healthcare facilities had on-site pharmacies; laboratory INR testing was off-site at two. Three clinics used warfarin dose-adjustment protocols; these were not validated for local use. We reviewed 229 patient clinical records. Most common indications for warfarin were venous thrombo-embolism in 112/229 (49%), atrial fibrillation in 74/229 (32%) and valvular heart disease in 30/229 (13%). Patients were generally followed up monthly. HIV prevalence was 20% and 5% at Ugandan and South African clinics respectively. Cardiovascular comorbidity predominated. Furosemide, paracetamol, enalapril, simvastatin, and tramadol were the most common concomitant drugs. Anticoagulation control was poor at all included clinics with median TTR of 41% (interquartile range 14% to 69%).

Conclusions

TTR was suboptimal at all included sites, despite frequent patient follow-up. Strategies to improve INR control in sub-Saharan patients taking warfarin are needed. Locally validated warfarin dosing algorithms in Uganda and South Africa may improve INR control.

Introduction

Warfarin is the most commonly prescribed oral anticoagulant in resource-limited settings, where it is used for the treatment and prophylaxis of venous thromboembolism, and for the prevention of embolic strokes in patients with atrial fibrillation (AF) and valvular heart disease. Patients receiving warfarin require ongoing monitoring of their International Normalised Ratio (INR) which needs to be kept in a defined therapeutic range determined by the indication for therapy. Under-dosing (leading to a sub-therapeutic INR) and overdosing (leading to a supra-therapeutic INR) places individuals at risk of thrombosis and bleeding, respectively. INR control in patients in sub-Saharan Africa is often poor [13] which may result in potentially preventable morbidity [4] and mortality [5]. The burden of HIV and tuberculosis (TB) is high in sub-Saharan Africa [6]. Patients on warfarin who are HIV positive and/or have TB require multiple concomitant medicines, which may interact with warfarin and complicate warfarin dosing and dose adjustment [7].

In high income countries, warfarin dosing is frequently guided by validated dosing algorithms, some of which include genotyping for polymorphisms important for warfarin metabolism [8]. Little work has been done on validated algorithms to guide dosing in sub-Saharan Africa. Direct oral anticoagulants (DOACs) are widely accessible in high-income settings, but higher costs limit their use in resource-limited settings. Warfarin is therefore likely to continue to be used extensively, and strategies to improve anticoagulation control on warfarin are important.

Our aim was to evaluate the quality of anticoagulation services in Uganda and South Africa and to describe the clinical and demographic characteristics of patients receiving warfarin.

Materials and methods

Study design and sites

We conducted the audit between 1 January and 31 July 2018. We included two outpatient clinics in Kampala, Uganda: at Mulago National Referral Hospital, and at the Uganda Heart Institute (UHI), which is a specialized cardiac centre. In South Africa, we included clinics providing outpatient anticoagulation care at Groote Schuur Hospital, Tygerberg Hospital, and Gugulethu Community Health Centre. All audited clinics were located in an urban setting. In Uganda, both clinics were located in referral hospitals where the vast majority of patients receiving warfarin anticoagulation in the country are managed. The clinics in Cape Town, South Africa, represented primary, secondary and tertiary levels of care.

We collected information from key members of clinic staff including doctors, nurses, laboratory and pharmacy staff using a structured data capture sheet. Data collected included availability and cost of anticoagulation drugs, and INR measurement and availability and use of dose adjustment protocols (see S1 Data).

We reviewed a sample of patients’ clinic records. The method of sampling clinic records varied between clinic sites because of difference in systems for record storage and documentation of clinic attendance. We aimed to minimise sampling bias. However, none of the included anticoagulation clinics had a readily available sampling frame that included all the patients in care at that clinic. We therefore could not draw a truly random sample of patients in care at any of the clinics. We extracted demographic data and clinical data including indication for anticoagulation, comorbidities, concomitant medications and INR results over the six months prior to the most recent clinic visit (see S1 Data)

We did not perform a formal sample size calculation as this was a descriptive audit of service provision, and as we did not want to test a hypothesis or estimate a parameter with a certain level of precision. We aimed to review at least 200 clinical records as this was considered feasible.

Data analysis

Qualitative data were summarised using tables with descriptive text, and quantitative data expressed as summary statistics–median and interquartile range (IQR). We calculated time in therapeutic range (TTR) over the most recent three months using the Rosendaal interpolation method [9]. We did not place any restriction on the maximum interval between INR measurements when applying the method.

We identified concomitant drugs that could interact with warfarin using Stockley’s Drug Interactions [10].

We used Stata 15.1 (StataCorp, College Station, Texas, USA) and R software package 3.5.3 for statistical analysis and figure generation.

Ethical approvals

The Joint Clinical Research Centre and Uganda National Council for Science and Technology in Uganda (HS 179ES) and the Human Research Ethics Committee at the Faculty of Health Sciences of the University of Cape Town in South Africa (585/2017) gave ethics approval. We obtained institutional clearance for the audited clinics. All staff providing information in Uganda provided written informed consent prior to participation. In South Africa, the requirement for written informed consent to be obtained from staff providing information was waived by the ethics committee.

Results

Anticoagulation services included in this audit are described in Table 1. The number of patients receiving warfarin ranged from 30 to 800 patients per month. Specialists or medical doctors were present in all clinics except for the secondary level service in South Africa, which was staffed by nurses. All facilities had an onsite pharmacy dispensing warfarin. At the Ugandan clinics, warfarin stock outs occurred frequently.

Table 1. Characteristics of the five outpatient anticoagulant services in Uganda and South Africa.

UGANDA SOUTH AFRICA
Facility name Mulago National Referral Hospital Uganda Heart Institute Groote Schuur Hospital Tygerberg Hospital Gugulethu Community Health Centre
Level of care of clinic/s providing warfarin Tertiary Hospital Tertiary Cardiac Centre Secondary Tertiary Primary
Service providers Specialist; Nurse; Medical Officer Specialist; Nurse; Medical Officer Nurse Specialist; Medical Officer Nurse; Medical Officer
Clinic days per week 1 5 4 5* 1
Patients per month 30 400 800 105 113
Onsite pharmacy Yes Yes Yes Yes Yes
DOACs available No Yes (rivaroxaban) No No No
INR turnaround time (days) 1** 0 *** 0 0 to 1 2**
INR testing cost to patient per visit (GBP) GBP 4 GBP 4 (laboratory INR) GBP 1 (point of care test) No cost to patient No cost to patient No cost to patient
Frequency of follow-up for clinically stable patients Monthly Monthly 4- to 6-weekly Monthly Monthly
Standard protocol used for dose adjustment No Yes Yes No Yes

GBP-British Pound Sterling

*There is no dedicated INR clinic. Patients on warfarin are distributed among the specialty clinics depending on where warfarin was initiated and the indication.

**No onsite INR testing services available

***Point-of-care tests available

INR turnaround time varied (see Table 1). At health facilities with onsite INR testing, results were available on the same day. However, for the tertiary hospital in Uganda and the primary health centre in South Africa, which did not have onsite INR testing services, INR results were returned the next day, requiring two consecutive visits for the patient. Only one site (Uganda Heart Institute) had point of care INR testing available.

At the Ugandan clinics, patients paid approximately £4 for an INR test; occasionally this fee was subsidised where point of care testing was available. Patients at both Ugandan clinics had to purchase warfarin themselves when there were drug stock-outs at the clinic; at a cost of between £3 and £6 for a month’s supply of warfarin depending on warfarin dose. At the South African clinics, patients did not pay for INR testing or for warfarin.

Three of the included clinics used warfarin dose adjustment protocols. The dose adjustment protocol used at the Uganda Heart institute was based on the Modified Henry Ford warfarin maintenance dosing algorithm [11]. The dosing adjustment schedules used in the South African clinics were not referenced. To our knowledge these protocols had not been validated for the clinic population.

We reviewed the clinic records of 229 patients: 68 from Uganda Heart Institute, 32 from Mulago National Referral Hospital haematology clinic, 48 from Groote Schuur Hospital, 47 from Tygerberg Hospital, and 34 from Gugulethu Community Health Centre. The three most common indications for warfarin treatment were venous thrombo-embolism (49%), atrial fibrillation (32%) and valvular heart disease (including mechanical heart valves) (13%). Characteristics of included patients are summarised in Table 2. We found that 126 patients (55%) had at least one concomitant medication which could potentially interact with warfarin [10]. There were 12 patients (5.2%) on efavirenz and one patient (0.43%) on lopinavir-ritonavir.

Table 2. Characteristics of patients attending five outpatient anticoagulation services in Uganda and South Africa.

Uganda (n = 100) South Africa (n = 129) Overall (n = 229)
Age in years (median [IQR]) 57 [43 to 67] 56 [42 to 65] 56 [43 to 66]
Female (n, (%)) 69 (69%) 87 (67%) 156 (68%)
Indication for warfarin (n, (%))* VTE: 63 (63%) VTE: 49 (38%) VTE: 112 (49%)
AF: 36 (36%) AF: 38 (29%) AF: 74 (32%)
VHD: 1 (1%) VHD: 29 (22%) VHD: 30 (13%)
Other: 0 (0%)** Other: 17 (13%)** Other: 17 (7%)**
Number of INR tests in 6 months (median [IQR]) 3 [3 to 4] 5 [3 to 6] 4[3 to 6]
HIV-positive (n, (%)) 20 (20%) 7 (5%) 27 (12%)
Current tuberculosis (n, (%)) 1 (1%) 1 (1%) 2 (1%)
Five most common non-communicable comorbidities (n, (%)) HPT: 29 (29%) HPT: 71 (55%) HPT: 100 (44%)
HF: 10 (10%) DM: 21 (16%) DM: 25 (11%)
HHD: 8 (8%) IHD: 20 (16%) IHD: 23 (10%)
DCMO: 6 (6%) Dyslipidaemia: 19 (15%) HF: 20 (9%)
DM: 4 (4%) HF: 10 (8%) Dyslipidaemia: 19 (7%)
Ten most commonly used concomitant medicines (n, (%)) Furosemide: 43 (43%) Paracetamol: 59 (46%) Furosemide: 90 (39%)
Spironolactone: 21 (21%) Enalapril: 50 (39%) Paracetamol: 59 (26%)
Bisoprolol: 19 (19%) Simvastatin: 49 (38%) Enalapril: 52 (23%)
Digoxin: 16 (16%) Furosemide: 47 (36%) Simvastatin: 50 (22%)
Lamivudine: 15 (15%) Tramadol: 45 (35%) Tramadol: 45 (20%)
Amlodipine:15 (15%) Atenolol: 32 (25%) Amlodipine: 44 (19%)
Telmisartan: 12 (12%) Amlodipine: 29 (22%) Atenolol: 38 (17%)
Sildenafil: 10 (10%) Hydrochlorothiazide: 26 (20%) Hydrochlorothiazide: 35 (15%)
Efavirenz: 9 (9%) Carvedilol: 22 (17%) Spironolactone: 31 (14%)
Hydrochlorothiazide: 9 (9%) Metformin:17 (13%) Carvedilol: 29 (13%)
Zidovudine: 9 (9%)

AF, atrial fibrillation; DCMO, dilated cardiomyopathy; DM, diabetes mellitus; HF, heart failure; HHD, hypertensive heart disease; HPT, hypertension; IHD, ischaemic heart disease; VHD, valvular heart disease; VTE, venous thrombo-embolism.

* More than one indication may exist; therefore, totals may exceed 100%.

**Other: included chronic venous insufficiency, antiphospholipid syndrome, thrombophilia, congenital heart block and thrombotic syndrome

TTR was suboptimal at all included sites (see Fig 1). Median TTR overall was 41% (interquartile range 14% to 69%).

Fig 1. Time in therapeutic INR range (TTR) of patients attending five anticoagulation clinics in Uganda and South Africa (box represents median and interquartile range).

Fig 1

Discussion

This evaluation, which included outpatient clinics managing patients on warfarin at primary, secondary and tertiary level, found that TTR was suboptimal at all included sites. This occurred despite regular INR monitoring.

Unfortunately, our findings complement other recent sub-Saharan studies in South Africa, Namibia and Botswana, all reporting poor INR control, with mean/median TTR ranging from 29% to 47% [1,12,13]. It is known that a higher TTR is associated with increased efficacy of warfarin and reduction in bleeding complications [14]. In patients with non-valvular AF receiving warfarin, there is a three-fold risk of ischaemic events with under-anticoagulation and a five-fold risk of bleeding events with over-anticoagulation, compared to being within the therapeutic range [14]. Maximising TTR is therefore crucial for attainment of good clinical outcomes, as shown by a study in the UK, where a 10% increase in time out of range was associated with a 29% increased risk of mortality, a 10% increased risk of ischemic stroke, and 12% increased risk of other thromboembolic events [15].

A number of factors may affect INR control. We found that INR testing was generally available at all sites; however, patients at the Ugandan clinics had to pay up to £4 for a laboratory INR test. In addition, frequent pharmacy stock outs of warfarin at these clinics means that patients also have to incur costs of privately purchasing warfarin. These costs may be prohibitive, particularly in the Ugandan population where the average household monthly income is £62 - £144 [16]. However, TTR was poor at South African anticoagulation services as well, despite patients not having to pay for INR testing or warfarin.

Laboratory turnaround time at two clinics was at least one day requiring a second visit for dose adjustment, also contributing to increased transport costs and missed work days. Thus, strengthening laboratory facilities and pharmaceutical supply chain and provision of near-patient INR testing may contribute to improved anticoagulation control. However, TTR was poor even at facilities with onsite INR testing and no problems of drug stock outs, suggesting that there are other factors contributing to poor TTR.

Our population had a high burden of comorbidities such as heart failure and diabetes, which may be associated with lower TTR [17], because of polypharmacy as well as physiological changes due to comorbidity [18]. In addition, high HIV prevalence may further complicate warfarin dosing due to drug-drug interactions with non-nucleoside reverse transcriptase inhibitors and protease inhibitors [19,20]. Although our sample included few TB patients, it is important to consider that rifampicin, which is used in first-line TB treatment, induces warfarin metabolism, which further complicates warfarin dosing [21].

Pharmacogenomic differences due to polymorphisms in VKORC1 and CYP2C9 genes and additional polymorphisms in other genes e.g. CALU rs339097 may affect dosing requirements in patients of African descent [22]. Patients managed using genotype guided dosing algorithms in high-income settings have been shown to have higher mean TTR and fewer episodes of excessive anticoagulation compared to usual dosing [8]. Further studies need to be conducted in our population to develop and evaluate clinical and genetic dosing algorithms relevant for low-income settings.

DOACs require less frequent monitoring and are non-inferior or even superior to warfarin in preventing stroke in non-valvular AF [23,24]. However, their access is severely limited in resource-limited settings due to cost limitations; necessitating urgent improvements in warfarin management.

This study has limitations. We only included urban sites, and findings may not be generalizable to rural settings in South Africa and Uganda. However, in Uganda, we included the clinics known to manage the majority of patients receiving warfarin anticoagulation. It is possible that there are additional challenges facing anticoagulation services in more remote and poorly resourced settings in both South Africa and Uganda, which we have not captured. We audited each included facility at a single timepoint.

In conclusion, in the South African and Ugandan clinics that we evaluated, TTR was suboptimal. Strategies to improve INR control in sub-Saharan patients taking warfarin are urgently needed as the alternative DOACs are not freely available. The findings from our work will inform further research to develop and validate a warfarin dosing algorithm, one such strategy which may improve TTR, for use in this setting.

Supporting information

S1 Appendix. Data collection form.

(PDF)

S1 Data

(XLSX)

Acknowledgments

Thank you to the staff of Mulago National Referral hospital, Uganda Heart Institute, Groote Schuur Hospital, Tygerberg Hospital, and Gugulethu Community Health Centre for their help and support during the data collection for this work.

Data Availability

All relevant data are within the manuscript and Supporting Information files.

Funding Statement

This research was commissioned by the National Institute for Health Research (NIHR) Global Health Research Group on Warfarin anticoagulation in patients with cardiovascular disease in sub-Saharan Africa [ref: 16/137/101] using UK aid from the UK Government. The views expressed in this publication are those of the author(s) and not necessarily those of the NIHR or the Department of Health and Social Care.

References

  • 1.Ebrahim I, Bryer A, Cohen K, Mouton J, Msemburi W, Blockman M. Poor anticoagulation control in patients taking warfarin at a tertiary and district-level prothrombin clinic in Cape Town, South Africa. South African Medical Journal. 2018;108(6):490–4. 10.7196/SAMJ.2018.v108i6.13062 [DOI] [PubMed] [Google Scholar]
  • 2.Sonuga B. Profile and anticoagulation outcomes of patients on warfarin therapy in an urban hospital in Cape Town: a review of records of patients attending Victoria Hospital, Cape Town, South Africa: University of Cape Town; 2016. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 3.Zühlke L, Engel ME, Karthikeyan G, Rangarajan S, Mackie P, Cupido B, et al. Characteristics, complications, and gaps in evidence-based interventions in rheumatic heart disease: the Global Rheumatic Heart Disease Registry (the REMEDY study). European heart journal. 2014;36(18):1115–22. 10.1093/eurheartj/ehu449 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.Mouton JP, Njuguna C, Kramer N, Stewart A, Mehta U, Blockman M, et al. Adverse drug reactions causing admission to medical wards: A cross-sectional survey at 4 hospitals in South Africa. Medicine. 2016;95(19). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5.Mouton JP, Mehta U, Parrish AG, Wilson DP, Stewart A, Njuguna CW, et al. Mortality from adverse drug reactions in adult medical inpatients at four hospitals in South Africa: a cross‐sectional survey. British journal of clinical pharmacology. 2015;80(4):818–26. 10.1111/bcp.12567 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.WHO. Global tuberculosis report 2019. 2019 ISBN 978-92-4-156571-4.
  • 7.Sekaggya C, Nalwanga D, Von Braun A, Nakijoba R, Kambugu A, Fehr J, et al. Challenges in achieving a target international normalized ratio for deep vein thrombosis among HIV-infected patients with tuberculosis: a case series. BMC hematology. 2016;16(1):16. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.Pirmohamed M, Burnside G, Eriksson N, Jorgensen AL, Toh CH, Nicholson T, et al. A randomized trial of genotype-guided dosing of warfarin. New England Journal of Medicine. 2013;369(24):2294–303. 10.1056/NEJMoa1311386 [DOI] [PubMed] [Google Scholar]
  • 9.Rosendaal F, Cannegieter S, Van der Meer F, Briet E. A method to determine the optimal intensity of oral anticoagulant therapy. Thrombosis and haemostasis. 1993;70(03):236–9. [PubMed] [Google Scholar]
  • 10.Preston CL. Stockley's Drug Interactions. 12th Edition ed London: London: Pharmaceutical Press; 2019. [Google Scholar]
  • 11.Kim YK, Nieuwlaat R, Connolly S, Schulman S, Meijer K, Raju N, et al. Effect of a simple two‐step warfarin dosing algorithm on anticoagulant control as measured by time in therapeutic range: a pilot study. Journal of Thrombosis and Haemostasis. 2010;8(1):101–6. 10.1111/j.1538-7836.2009.03652.x [DOI] [PubMed] [Google Scholar]
  • 12.Jonkman LJ, Gwanyanya MP, Kakololo MN, Verbeeck RK, Singu BS. Assessment of anticoagulation management in outpatients attending a warfarin clinic in Windhoek, Namibia. Drugs & Therapy Perspectives. 2019:1–6. [Google Scholar]
  • 13.Mwita JC, Francis JM, Oyekunle AA, Gaenamong M, Goepamang M, Magafu MG. Quality of anticoagulation with warfarin at a Tertiary Hospital in Botswana. Clinical and Applied Thrombosis/Hemostasis. 2018;24(4):596–601. 10.1177/1076029617747413 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14.Reynolds MW, Fahrbach K, Hauch O, Wygant G, Estok R, Cella C, et al. Warfarin anticoagulation and outcomes in patients with atrial fibrillation: a systematic review and metaanalysis. Chest. 2004;126(6):1938–45. 10.1378/chest.126.6.1938 [DOI] [PubMed] [Google Scholar]
  • 15.Jones M, McEwan P, Morgan CL, Peters J, Goodfellow J, Currie CJ. Evaluation of the pattern of treatment, level of anticoagulation control, and outcome of treatment with warfarin in patients with non-valvar atrial fibrillation: a record linkage study in a large British population. Heart. 2005;91(4):472–7. 10.1136/hrt.2004.042465 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 16.UBOS. Uganda National Househould Survey 2016/2017. Kampala, Uganda: Uganda Bureau Of Statistics, 2017 27th September, 2017. Report No.
  • 17.Nelson WW, Choi JC, Vanderpoel J, Damaraju CV, Wildgoose P, Fields LE, et al. Impact of co-morbidities and patient characteristics on international normalized ratio control over time in patients with nonvalvular atrial fibrillation. The American journal of cardiology. 2013;112(4):509–12. 10.1016/j.amjcard.2013.04.013 [DOI] [PubMed] [Google Scholar]
  • 18.Rose AJ, Hylek EM, Ozonoff A, Ash AS, Reisman JI, Berlowitz DR. Patient characteristics associated with oral anticoagulation control: results of the Veterans AffaiRs Study to Improve Anticoagulation (VARIA). Journal of Thrombosis and Haemostasis. 2010;8(10):2182–91. 10.1111/j.1538-7836.2010.03996.x [DOI] [PubMed] [Google Scholar]
  • 19.Esterly JS, Darin KM, Gerzenshtein L, Othman F, Postelnick MJ, Scarsi KK. Clinical implications of antiretroviral drug interactions with warfarin: a case–control study. Journal of Antimicrobial Chemotherapy. 2013;68(6):1360–3. 10.1093/jac/dkt043 [DOI] [PubMed] [Google Scholar]
  • 20.Liedtke MD, Rathbun RC. Warfarin–antiretroviral interactions. Annals of Pharmacotherapy. 2009;43(2):322–8. 10.1345/aph.1L497 [DOI] [PubMed] [Google Scholar]
  • 21.Martins MA, Reis AM, Sales MF, Nobre V, Ribeiro DD, Rocha MO, et al. Rifampicin-warfarin interaction leading to macroscopic hematuria: a case report and review of the literature. BMC Pharmacology and Toxicology. 2013;14(1):27. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22.Suarez‐Kurtz G, Botton MR. Pharmacogenomics of warfarin in populations of A frican descent. British journal of clinical pharmacology. 2013;75(2):334–46. 10.1111/j.1365-2125.2012.04354.x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 23.Patel MR, Mahaffey KW, Garg J, Pan G, Singer DE, Hacke W, et al. Rivaroxaban versus warfarin in nonvalvular atrial fibrillation. New England Journal of Medicine. 2011;365(10):883–91. 10.1056/NEJMoa1009638 [DOI] [PubMed] [Google Scholar]
  • 24.Connolly SJ, Ezekowitz MD, Yusuf S, Eikelboom J, Oldgren J, Parekh A, et al. Dabigatran versus warfarin in patients with atrial fibrillation. New England Journal of Medicine. 2009;361(12):1139–51. 10.1056/NEJMoa0905561 [DOI] [PubMed] [Google Scholar]

Decision Letter 0

Joel Msafiri Francis

8 Oct 2019

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A cross-sectional evaluation of warfarin anticoagulation services in Uganda and South Africa

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Reviewer #1: SUBMISSION SUMMARY:

Semakula and colleagues present an interesting and important cross sectional study examining the demographics and time in therapeutic range (TTR) of patients receiving warfarin at five anticoagulation clinics in Uganda and South Africa. In particular, they report on facility characteristics, indications for anticoagulation, patient characteristics and comorbidities, and anticoagulation care quality metrics.

GENERAL IMPRESSIONS:

Overall, the investigators explore an important clinical question, namely the indications for warfarin as well as TTR attainment in several anticoagulation clinics in Sub Saharan Africa. The manuscript could be strengthened, however, by further clarification and enumeration of the methods, both in the rationale for the timeframe and patient selection procedure as well as statistical methods. Furthermore, since individual level data were gathered from the chart review, multivariable regression analyses could be performed to determine which variables may be associated with better TTR, thus exploring many of the speculative mechanisms for poor treatment quality brought up by the authors in the Discussion section.

COMMENTS BY SECTION:

* Title:

- Consider clarifying the title to avoid misunderstanding that the evaluation was performed on a nationwide scale (e.g. “A cross-sectional evaluation of warfarin anticoagulation services in five clinics in Uganda and South Africa”).

* Abstract:

- Page 3 (Line 55): Consider using more specific language than “INR control”. This is acceptable clinical wording, but the conclusion suggested by this manuscript specifies inadequate TTR attainment is the finding, which may be a more precise description of the reported outcome.

* Introduction:

- Page 4 (Line 68): Citation needed.

- Page 4 (Line 70): Citation needed.

* Methods:

- Page 5 (Line 81): Was there a reason that a 7 month data collection period was selected? It seems that 12 months would be a more relevant/representative timeframe, particularly since there are seasonal variations in hospitalization rates and causes, which may impact the generalizability of the findings. If there was not a specific reason for the selected time interval, this should be reported as a limitation of the study.

- Page 5 (Line 93): Please describe the rationale and specific procedure for the convenience sample. Were patients enrolled consecutively? Were they enrolled following a clinic visit? Was there any random selection procedure of charts? Enrollment alphabetically could potentially introduce complicating factors such as overrepresentation of certain families, ethnic groups, etc.

- Page 5 (Line 94): If a hypothesis of this paper is to assess for potential medication interactions between warfarin and TB/HIV drugs, perhaps it would make more sense to select and query the percentage of patients taking medications known a priori to affect warfarin metabolism. Examples of such medications (NNRTIs and rifampicin) are brought up by the authors in the Discussion section (Page 11) but are not reported as included among drugs queried in the study design.

- Page 5 (Line 96): “Statistical and data analysis” is redundant. The subheading can be changed to “Statistical Analysis” or “Data Analysis”.

- Page 5 (Line 98): Please specify which summary statistics were used (e.g. median, IQR, etc.).

- Page 5 (Line 99): Please name what software packages were used for statistical analysis and figure generation.

- Page 5 (Line 99): This study could be strengthened by performing regression analyses, which could potentially identify factors that may be associated with substandard TTR attainment. Was there a reason this was unable to be performed?

- Page 6 (Line 104): Please include the basis for waiving of informed consent from patients.

- Page 6 (Line 109): Please include the basis for waiving of informed consent from staff.

* Results:

- Page 6 (Lines 111-117): The descriptions of the audited clinics and interviewed individuals could be included in the Study Design and Sites subsection rather than the Results section, since these were known prior to the acquisition of study data.

- Page 8 (Line 133, Line 136): Please clarify the analyses were performed in “Ugandan sites” and “South African sites” rather than “Uganda” or “South Africa”.

* Discussion:

- Page 10 (Line 166): Please clarify how regular patient follow-up and regular INR monitoring were confirmed in this present analysis (e.g. what percentage of patients in the program actually made it to monthly follow-up appointments or INR monitoring visits).

- Page 11 (Lines 189-193): See above in Methods section. The authors discuss the potential of NNRTIs or rifampicin to affect warfarin metabolism, but the prevalence of use of these drugs is not explicitly queried in the study design.

Reviewer #2: 1. Authors state that they used a convenience sample. What was this convenience? Was it consecutive patients seen in the clinics? Random? Needs some elaboration.

2. The authors stated that they interviewed service providers (Doctors, nurses, etc.). However that data obtained from these interviews (quantitative or qualitative) are not clearly mentioned or discussed in the results or discussion sections. Most of the data they state in results section could have come from the patients and patient records. This needs to be clarified.

Reviewer #3: Reviewer # comments

Manuscript title: A cross-sectional evaluation of warfarin anticoagulation services in Uganda and South Africa

General feedback: The paper addresses an important topic on warfarin in the lower-income country (Uganda) and middle-income country (South Africa)

However, several methodological issues need to be addressed.

1. Methods:

a. The audit was conducted between 1 January and 31 July 2018. Authors extracted demographic data and clinical data including indication for anticoagulation, comorbidities, concomitant medications and INR results. It would have been essential to state the span over which INR results were collected. Did the authors document all the INR results over the study period (1 January and 31 July 2018)?

b. We selected, through convenience sampling, key members of clinic staff who were involved in anticoagulation care and who indicated their availability and willingness to be interviewed. Interviews were conducted using a structured questionnaire. I would avoid the word interview but rather use questionnaire administration. This was not a qualitative study, but rather the administration of structured questionnaires.

2. Statistical and data analysis

a. Although the authors stated that time in therapeutic range (TTR) over the most recent

three months was calculated using the Rosendaal interpolation method, one would expect more description as to who qualified for analysis. The Rosendaal method uses INR values from patients with at least two valid intervals separated by 56 days (8 weeks) or less, without an intervening hospitalisation. Some authors have used 60-90 days between readings. It is, therefore, essential to state the interval.

3. Results:

a. A lot of the initial sentences in the results section fits more on the method section than as results. For instance, the description of the study setting. Knowing that Mulago is a tertiary hospital or Groote Schuur as a secondary hospital is a piece of basic information that describes a study site, even before data collection. Kindly review this part.

b. Kindly state if valvular heart diseases included mechanical heart valves.

4. Discussion

a. Although the authors pointed out that the cost of INR testing and warfarin is may be prohibitive in anticoagulation control, this was not clear in figure 1. Ugandan site where patients paid for the warfarin/INR service had a similar level of anticoagulation control as the South African site! I expected this observation to feature in the discussion than the way the authors discussed.

b. Similarly, the contribution of HIV was not very evident despite the considerable difference in the prevalence (20% vs 5%). As in (a) above, this was not clearly stated.

c. Although this study is typically descriptive and may not be powered enough to analyse associations, it would have been nice to look at whether the variables which were collected had any influence on the level of anticoagulation control. If this is not done, the discussion on ‘’associated factors’’ will be limited.

d. Study limitations. How about the sample size? Was it enough to answer the primary objective? This is not justified in the manuscript and could feature as a limitation.

e. Conclusion: The findings from our work will inform further research to develop and validate a warfarin dosing algorithm for use in this setting. Was there any evidence to suggest that the absence of a validated algorithm affected anticoagulation control? As some sites had adopted some algorithm, one would expect the authors to have analysed if the lack of an algorithm affected anticoagulation control before having this conclusion.

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Reviewer #1: No

Reviewer #2: No

Reviewer #3: Yes: Julius Mwita

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Attachment

Submitted filename: Reviewer PlosOne.docx

Decision Letter 1

Joel Msafiri Francis

4 Dec 2019

PONE-D-19-22709R1

A cross-sectional evaluation of five warfarin anticoagulation services in Uganda and South Africa

PLOS ONE

Dear Dr. Cohen,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Specifically, 

There are two unclear issues – that you may need to rectify before the paper is accepted for publication.

  1. Why no formal sample size estimation was carried out? This is critical and justification is important.

  2. I am not sure it is true that there was no sampling frame?  Ideally – the sampling frame should have been the number of patient records available at the sites.  So, the statement that there was no sampling frame may not be entirely true.

We would appreciate receiving your revised manuscript by Jan 18 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter.

To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). This letter should be uploaded as separate file and labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. This file should be uploaded as separate file and labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. This file should be uploaded as separate file and labeled 'Manuscript'.

Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out.

We look forward to receiving your revised manuscript.

Kind regards,

Joel Msafiri Francis, MD, MS, PhD

Academic Editor

PLOS ONE

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #2: All comments have been addressed

Reviewer #3: All comments have been addressed

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2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #2: Yes

Reviewer #3: Yes

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3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #2: Yes

Reviewer #3: Yes

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4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #2: Yes

Reviewer #3: Yes

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5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #2: Yes

Reviewer #3: Yes

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6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #2: My comments have been fully addressed. I don't have further comments. I think the manuscript adds to the existing knowledge.

Reviewer #3: comments have been addressed.

However, authors are advised to check the whole manuscript for consistency of their wordings. For instance the use of "INR control" continued despite of the fact that authors agreed to replace it. Similarly, the word "interview" still appears in the abstract

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7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #2: No

Reviewer #3: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step.

Decision Letter 2

Joel Msafiri Francis

19 Dec 2019

A cross-sectional evaluation of five warfarin anticoagulation services in Uganda and South Africa

PONE-D-19-22709R2

Dear Dr. Cohen,

We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements.

Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication.

Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

With kind regards,

Joel Msafiri Francis, MD, MS, PhD

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Acceptance letter

Joel Msafiri Francis

17 Jan 2020

PONE-D-19-22709R2

A cross-sectional evaluation of five warfarin anticoagulation services in Uganda and South Africa

Dear Dr. Cohen:

I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

For any other questions or concerns, please email plosone@plos.org.

Thank you for submitting your work to PLOS ONE.

With kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Joel Msafiri Francis

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Appendix. Data collection form.

    (PDF)

    S1 Data

    (XLSX)

    Attachment

    Submitted filename: Reviewer PlosOne.docx

    Attachment

    Submitted filename: Response to reviewers.docx

    Attachment

    Submitted filename: Response to reviewers.docx

    Data Availability Statement

    All relevant data are within the manuscript and Supporting Information files.


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