Abstract
Enterovirus D68 (EV-D68) is a non-polio enterovirus that affects the respiratory system and can cause serious complications, especially in children and older people with weakened immune systems. As an emerging virus, there are no current antiviral therapies or vaccines available. Our goal was to develop a mouse model of human EV-D68 infection that mimicked the disease observed in humans and could be used for evaluation of experimental therapeutics. This is the first report of a respiratory disease model for EV-D68 infection in mice. We adapted the virus by 30 serial passages in AG129 mice, which are deficient in IFN- α/β and –γ receptors.
Despite a lack of weight loss or mortality in mice, lung function measured by plethysmography, showed an increase in enhanced pause (Penh) on days 6 and 7 post-infection. In addition, as virus adapted to mice, virus titer in the lungs increased 320-fold, and the pro-inflammatory cytokines MCP-1 and RANTES increased 15-fold and 2-fold in the lung, respectively. In addition, a time course of mouse-adapted EV-D68 infection was determined in lung, blood, liver, kidney, spleen, leg muscle, spinal cord and brain. Virus in the lung replicated rapidly after intranasal inoculation of adapted virus, 106 CCID50/mL by 4 hours and 108.3 CCID50/mL by 24 hours. Virus then spread to the blood and other tissues, including spinal cord and brain. This mouse model for EV-D68 infection includes enhanced pause (Penh) as an indicator of morbidity, and viremia, virus titers and proinflammatory cytokines in the lung, and lung histopathology as indicators of disease. Our mouse-adapted virus has a similar antiviral profile to the original isolate as well as another respiratory picornavirus, rhinovirus-14. This model will be valuable in evaluating experimental therapies in the future.
Keywords: Enterovirus D68, Respiratory Disease, Animal Model, AG129 mice
1. Introduction
According to the Centers for Disease Control and Prevention (CDC), enteroviruses cause about 15 million infections annually in the United States. Most people infected with enterovirus are asymptomatic or have only mild illness (Midgley et al., 2014). However individuals with asthma or reactive airway disease (Midgley et al., 2014; Midgley et al., 2015), infants and/or individuals with weakened immune systems can have serious complications when infected with EV-D68 (Smee et al., 2016). EV-D68 infections were rarely reported after their initial discovery in 1962 (Imamura and Oshitani, 2015). However, since the early 2000’s EV-D68 has been increasing in prevalence as a cause of respiratory illness.
In 2014, the United States experienced an outbreak of Enterovirus D68 with over 1,100 cases reported (Rhoden et al., 2015). The cases were mostly children with severe respiratory illness (Imamura and Oshitani, 2015). Enterovirus D68 patients presented with shortness of breath, cough, and nasal congestion. Patients also showed decreased air entry or wheezing, and moderate to severe respiratory distress. In addition, 5-10% of individuals who tested positive for EV-D68 exhibited neurological disease (Imamura et al., 2015). Two states, Colorado and California originally reported these cases of acute flaccid paralysis (AFP). However, by mid-December at least 33 states in the U.S. reported children with AFP who were positive for EV-D68 (Greninger et al., 2015; Matsumoto et al., 2016; Messacar et al., 2016; Messacar et al., 2015).
To date there are no approved treatments for EV-D68, although there are many compounds that have shown efficacy against EV-D68 in vitro, including Rupintrivir, Enviroxime and Pleconaril (Rhoden et al., 2015; Smee et al., 2016; Sun et al., 2015). One reason treatments have not been approved is that until recently, an animal model for study of experimental therapeutics against EV-D68 was not available. A cotton rat infection model was recently reported using non-adapted EV-D68 (Patel et al., 2016). In addition, a model was recently developed showing the neurotropic effects of EV-D68 in neonatal Swiss Webster mouse pups (Hixon et al., 2017). However, this is the first report of a respiratory disease model for EV-D68 infection in mice. Unlike other models, we developed an EV-D68 model by adapting the virus to AG129 mice through serial passage. We demonstrate that the mouse-adapted EV-D68 replicated rapidly in the lung after intranasal inoculation of virus, and then spread to the blood and other tissues, including spinal cord and brain.
2. Materials and Methods
2.1. Viruses and Cell Lines.
The following viruses were obtained from the American Type Culture Collection (ATCC, Manassas, VA): enterovirus D68 (US/MO/14-18949) and human rhinovirus type 14 (RV-14). Human rhabdomyosarcoma (RD) cells were obtained from ATCC. HeLa-Ohio-1 (human cervical epithelioid carcinoma) cells were obtained from Dr. Frederick Hayden (University of Virginia, Charlottesville, VA). Media used for EV-D68 cell culture infection included 2% FBS and 25 mM MgCl2 in MEM + 50 μg/ml of gentamicin. Tissues harvested from mice were homogenized in MEM.
2.2. Animals.
Male and female AG129 mice, deficient in IFN- α/β and –γ receptors (Muller et al., 1994; van den Broek et al., 1995), were obtained from a specific-pathogen free breeding colony at Utah State University. For model development, male and female mice were used in all studies.
2.3. Passage of virus in mice.
Four-week-old AG129 mice were used to serially-passage Enterovirus D68 (US/MO/14-18949) (Smee and Barnard, 2013). For each passage, the animals were infected intranasally with EV-D68. After three days, lungs from infected mice were homogenized in 1 mL of MEM. Part of the recovered virus was titrated on human RD cells and part of the lung homogenate was pooled and used to re-infect the next group of mice. This was repeated for 30 passages. A modified CDC RT-PCR protocol was used to verify that samples from each mouse passage contained EV-D68 (Wylie et al., 2015). The mouse-passaged (MP) virus was labeled sequentially as MP1, MP2, etc.
2.4. Virus Titration Assay.
Microtiter plates were seeded with RD cells 24 hours prior to infection and incubated at 37°C with 5% CO2. Samples collected from mouse tissues were serially diluted, and 10-fold dilutions added to microtiter plates and incubated for 6 days at 33°C with 5% CO2 (Smee et al., 2016). Six days post-infection (p.i.), cells were examined visually for viral cytopathic effect. The 50% cell culture infectious dose (CCID50) was calculated using an endpoint dilution method (Reed LJ, 1938).
2.5. Plaque Purification of Mouse Passage 30 (MP30pp) virus.
EV-D68 MP30 was serially diluted and plated onto 12-well microplates containing RD cells. The virus was incubated with cells for 1-hour, the growth medium was removed and replaced with 0.6% SeaPlaque™ Agarose (FMC Bioproducts, Rockland, ME USA), 2% FBS and 25mM MgCl2. Cells were observed for plaques until day 3 day p.i.. Individual plaques were selected and inoculated into T-25 flasks containing RD cells and growth media. Virus from T-25 flasks showing 100% CPE after 2-3 days was harvested and used to repeat the plaque purification procedure three times. The resulting virus stock was labeled MP30pp.
2.6. Comparison of Mouse Passaged Viruses.
To demonstrate the effects of virus adapted over the 30 passages, five groups of mice were infected with MP0, MP10, MP20, MP30, and MP30pp. Mouse tissues (lungs, liver, kidneys, spleen and whole blood) were harvested from mice on day three p.i. and virus titers determined on RD cells.
2.7. Time Course of Infection.
The time course of infection following i.n. administration of mouse-adapted EV-D68 (MP30pp) included collection of mouse tissues for evaluation of virus titers. Tissues including: lungs, liver, kidney, spleen, blood, spinal cord, brain and leg muscle, were harvested at 8 hours and day 1, 3, 5, 7, 9 p.i. At each time point, mice were euthanized and tissues collected for virus titers, histological analyses, and measurement of pro-inflammatory cytokines in the lung.
2.8. Histological analyses.
The left lung, liver, kidney and spleen were removed and fixed in 4% paraformaldehyde for 2 days. Paraformaldehyde-fixed tissue sections were processed and embedded in paraffin by standard techniques. Sections, 5 μm thick, were stained with hematoxylin and eosin (H&E) and examined by light microscopy. A lesion severity grading system was used: 0 = no lesion, 1+ = minimal lesion, 2+ = mild lesion, 3+ = moderate lesion and 4+ = severe lesion.
Infected (EV-D68 MP30pp 106.5 CCID50/mouse) and sham infected mice were sacrificed on day 2 post-infection. Mice were perfused transcardially with phosphate buffered saline (PBS) followed by 4% paraformaldehyde. Lungs were removed and post-fixed in the same fixative for 2 days. All tissues were cryoprotected in 30% sucrose in PBS for 3 days at 4 °C, embedded in OCT compound (Ted Pella, Inc), and frozen in a dry ice/isopentane bath. Eight sets of adjacent 30 μm sections were cut by cryostat, mounted on slides, and stored at 4 °C until ready for additional processing. For immunohistofluorescence staining, sections were dried on a slide warmer (Lab Line, Midland, ON, Canada) at 50 °C, then encircled with a hydrophobic barrier pen (ImmEdge, Vector Labs), rinsed with PBS, and covered in blocking solution (10% normal serum, 0.5% Triton X-100 in PBS) for 1 hour (hr). Primary antibody against EV-D68 VP2 capsid protein (GeneTex, GTX132314, Irvine, CA) was diluted 1/100 in antibody blocking solution (10% normal serum, 0.2% Triton X-100 in PBS) and added to sections for incubation overnight at room temperature. Secondary antibodies conjugated to Alexa-488 (ThermoFischer Scientific) were diluted 1/200 in antibody blocking solution. Sections were rinsed three times in PBS, incubated with secondary antibody solution for 2 hr at room temperature, and rinsed twice in PBS. Coverslips were mounted with Fluoromount G (Southern Biotech, Birmingham, AL).
2.9. Imaging and image processing.
Fluorescent images were obtained at 200X with a laser scanning confocal microscope (Zeiss, LSM710). For images chosen for publication, settings were adjusted to maximize the signal-to-noise ratio so that relevant features could be seen more clearly. The same settings were used for each image.
2.10. Lung Cytokine/Chemokine Evaluations.
A sample (200 μl) from each lung homogenate was tested for cytokines and chemokines using a chemiluminescent assay according to the manufacturer’s instructions (Quansys Biosciences Q-Plex™ Array, Logan, UT). The Quansys multiplex ELISA is a quantitative test in which 16 distinct capture antibodies are applied to each well of a 96-well plate in a defined array. Each sample supernatant was tested at 2 dilutions for the following: IL-1α, IL-1β, IL-2, IL-3, IL-4, IL-5, IL-6, IL-10, IL-12p70, IL-17, MCP-1, IFN-γ, TNFα, MIP-1α, GM-CSF, and RANTES. Cytokine and chemokine concentrations are reported as fold changes compared to measurements from uninfected control mice (baseline). Definition of abbreviations are: IL - interleukin; MCP - monocyte chemoattractant protein; IFN - interferon; TNF - tumor necrosis factor, MIP – macrophage inflammatory protein; GM-CSF - granulocyte/ macrophage colony stimulating factor; and RANTES - regulated upon activation, normal T cell expressed and secreted.
2.11. Evaluation of Lung Function by Plethysmography.
The plethysmograph and mouse-sized acquisition chambers (emka Technologies, Falls Church, VA) were used to evaluate lung function. The following parameters were measured and analyzed: enhanced pause (Penh), tidal volume (TV), minute volume (MV) and expiratory volume (EV), times of inspiration (Ti), expiration (Te), and relaxation (RT), peak inspiratory (PIF) and expiratory (PEF) flow, frequency of breath (Freq), 50% expiratory flow (EF50) and end inspiratory (EIP) and expiratory (EEP) pauses. To reduce variability, mean readings from infected mice were normalized to mean readings from sham-infected (cell culture medium) controls on each day. To obtain measurements, mice were placed in the chambers and allowed to acclimate for three minutes. Plethysmography readings were then recorded for the next five minutes in response to room air. To simulate a hypercapnia challenge, the chambers were flooded with a gas mixture containing 7% CO2, 50% O2 and balanced with N2. The plethysmography readings were recorded for an additional five minutes as CO2-challenged.
2.12. Antiviral Compounds.
Enviroxime was obtained from the U.S. Army Medical Research Institute of Infectious Diseases (USAMRIID), Ft. Detrick, Frederick, MD through the NIAID antiviral screening program. Pirodavir was purchased from AdooQ Bioscience, (Irvine, CA). Pleconaril was obtained from the former Biota Pharmaceuticals (Notting Hill, Victoria, Australia). Rupintrivir and Guanidine HCl were purchased from Sigma Aldrich (St. Louis, MO).
2.12. In Vitro Antiviral Assays.
In vitro antiviral studies were conducted by the inhibition of virus-induced cytopathic effect in triplicate wells of 96-well microplates of infected cells as described previously (Barnard et al., 2004; Smee et al., 2016). EV-D68 viruses were evaluated in RD cells at 33°C with 25 mM MgCl2 and 2% FBS in MEM. RV-14 was evaluated in Hela-Ohio cells at 33°C with 25 mM MgCl2 and 2% FBS in MEM. The percentage of viral destruction was quantified by neutral red dye uptake. Compounds were evaluated at 8 half-log10 concentrations designed to bracket the 50% virus inhibitory concentration (EC50). The 50% cytotoxic concentrations (CC50) of the compounds were determined in duplicate uninfected wells on the same microtiter plate. A selectivity index (SI) was calculated for each compound by dividing the CC50 by the EC50.
2.14. RNA isolation, PCR amplification and sequencing of mouse adapted virus
Viral RNA was isolated from virus-infected cell culture supernatant by using a Qiamp Viral RNA Mini Kit (Qiagen, Germantown, MD) according to the manufacturer's protocol. Primers were generated for three sets of overlapping consensus sequences to mimic the protocol employed by the Centers for Disease Control and Prevention (Ng et al., 2016). The EV-D68 genome was divided into three amplicons. The first ampliconwas from the 50UTR to VP1 (CCACTCCAAGGGCCCACGTG [1e20]; TCGTGAGTATAGTGATCTCAGCATCAAATCTAAGGTAT [2737-2700]), the second from VP1 to 2C (TGTGGTCCCTAGCTTAAATGCAGTTGAAAC [2430- 2359]; ACTATTAGCTCATTTGATGGGTGTACTACAATCCA [5147- 5113]), and the third from 2C to 30UTR (GGATTCTCAAGAAGTTAGGGATTATTGCCAAAAGAAAG [5073e5110]; GGTTCCCAATTAAACGAAAATTTACCTCTAAATGAAAGTAAC [7311- 7270]). All primers were based off coordinates for EV-D68 US/ MO/14e18949 (Genbank KM851227.1). cDNAwas generated using a Superscript™ First-Strand Synthesis System (Thermo Fisher Scientific, Waltham, MA). A virus-specific reverse primer generated from the sequence of the 30UTR region of EV-D68 was used for firststrand synthesis. cDNA samples were used as the template for PCR with Thermo Scientific Phusion High-Fidelity DNA Polymerase (Thermo Fisher Scientific, Waltham, MA) using the manufacturer's 3-step protocol. For each sample, all three amplicons were pooled and purified using the Nucleospin® Gel and PCR Clean-up kit (Macherey-Nagel, Bethlehem, PA). Samples were submitted to the DNA Sequencing Core (University of Utah, Salt Lake City, UT) for analysis on their Ion Torrent Next Generation Sequencing (NGS) Technology. Sequence data was aligned using the EV-D68 US/MO/ 14e18949 sequence as the reference genome using the Integrative Genomics Viewer (Robinson et al., 2011; Thorvaldsdottir et al., 2013). Individual nucleotide mutations were recorded for each sample. Changes to the amino acid sequence were determined using the Translate Tool on the ExPASy resource portal from the Swiss Institute for Bioinformatics (www.sib.swiss/). Protein sequences were aligned for mutations using the Protein BLAST tool from the National Center for Biotechnology Information (www.ncbi.nlm.nih.gov/). As the amino acid sequence was not determined experimentally, all changes to amino acids are predicted based upon the nucleotide sequence.
2.15. Ethical Treatment of Animals.
This study was completed under the approval of the Institutional Animal Care and Use Committee of Utah State University. The work was performed in the AAALAC-accredited Laboratory Animal Research Center of Utah State University in accordance to the National Institutes of Health Guide for the Care and Use of Laboratory Animals (National Research Council (U.S.) Committe for the Update of the Guide for the Care and Use of Laboratory Animals, 2011).
2.16. Statistical Analysis.
Statistical Analysis was completed using Prism 7.0d, Graph Pad Software (San Diego, CA). For comparison of virus titers, a one-way analysis of variance (ANOVA) followed by Tukey’s multiple comparison, or by two-way ANOVA was used for effects based on the day p.i. using Prism 7.0d. Group differences in histologic lesion scores were determined by Kruskal-Wallis non-parametric test, followed by Dunn's multiple comparison test using Prism 7.0d. Cytokine and chemokine measurements were compared by ANOVA assuming equal variance and normal distribution.
3. Results
3.1. Comparison of Mouse Passaged EV-D68.
A comparison of EV-D68 after mouse passaging determined which virus passage produced the highest virus titers and greatest disease signs for the model (Figure 1). Virus titers in whole blood were at the limit of detection of the assay for MP0, and then increased from 101.33 to 102.5 CCID50 per mL for MP10 and MP30 (Figure 1A). Virus recovered from the lungs of infected mice increased from 105.8 to 107.0 CCID50 per mL for MP0 and MP10, respectively, then remained nearly constant at 107.3 CCID50 per mL for MP10 through MP30 (Figure 1B). Virus titers in liver samples were at the limit of detection for MP0, then increased from 103.0 to 103.5 for MP10 and MP20, and MP30 was 100-fold higher at 105.5 CCID50 per mL. In addition, virus titers in Kidney increased from 101.5 to 105.2 CCID50 per mL for MP0 to MP30, and in spleen from 101.5 to 104.8 CCID50 per mL for MP0 to MP30.
During adaptation of EV-D68 to mice, we did not observe weight loss or mortality following infection. Therefore, we sought to identify other parameters that could indicate virus was adapting and producing an infection in mice. Virus titers in lung tissues was a primary marker for virus adaptation, but we also observed an increase in the proinflammatory cytokines, MCP-1 and RANTES. This was an early indication that EV-D68 was adapting to infect mice, as the infection was inducing an inflammatory response. Figure 2 shows MCP-1 and RANTES concentrations in lung following infection with EV-D68 at different passage numbers. Lung samples from mice infected with EV-D68 MP0, MP10, MP20, MP30, and MP30pp were evaluated by multiplex ELISA for a panel of 16 pro-inflammatory cytokines and chemokines. Mice infected with MP0 showed similar concentrations of cytokines to those of uninfected control mice. However, the pro-inflammatory cytokines MCP-1 and RANTES showed significant increases in groups infected with MP10, MP20, MP30 and MP30pp as virus adapted to mice (Figure 2). The mice infected with MP30 showed the highest levels of MCP-1 and RANTES. The mice infected with MP30pp also showed higher levels of MCP-1 than the mice infected with MP0, MP10, and MP20. However, RANTES levels decreased with the plaque purified strain of virus compared to MP30 (Figure 2). Pro-inflammatory cytokines from other tissues were evaluated, although significant differences compared to control mice were not observed (data not shown).
Histopathology revealed lesions of interstitial pneumonia in the lung that increased in severity as EV-D68 was passaged in mice from MP0 to MP30 (Figure 3). Even though lung virus titers, RANTES levels, and pneumonia severity grades appeared to be slightly lower after plaque purification of MP30, we considered a plaque-purified virus to be essential for qualification of our EV-D68 mouse model.
3.2. Time Course of Infection with mouse-adapted EV-D68.
Mice receiving the highest challenge dose (106.5 CCID50) showed peak virus titers on day 1 for lung, liver, and spleen, and on day 3 for kidney (Figure 4). At 4 hours p.i. 106 CCID50 virus per mL was recovered from lung tissues, by 8-hours p.i. the virus titers increased to 107.7 CCID50/mL and by 24 hours (day 1) the titer was 108.3 CCID50/mL. The titer remained high through day 3 p.i., then decreased on day 5 and was undetectable by day 9. The lower dose challenge groups showed peak titers on day 3 that decreased on day 5 p.i. and were undetectable by day 7 p.i. (Figure 4).
Blood, spinal cord, brain and leg muscle tissues were only collected from mice infected with highest (106.5 CCID50) and lowest (104.5 CCID50) challenge doses (Figure 5). Mice receiving the high dose challenge showed peak virus titers on day 1 for blood and brain, day 3 for leg muscle, and days 1-3 for spinal cord. The lower dose challenge showed peak titers on day 3 or 5 (Figure 5). Of note, was the rapid appearance of virus in the CNS (spinal cord and brain tissues) in mice infected with the high challenge dose (Figure 5). These results indicate that EV-D68 infection in the mouse becomes systemic and replicates at multiple sites (Figure 4 and 5). Virus titers in the blood were lower than other tissues, and cleared more rapidly, suggesting that virus is replicating in the tissues and not coming from blood remaining in those tissues. In addition, we considered the possibility that virus was gaining access to the CNS by retrograde axonal transport from peripheral nerves in the leg, so observation of virus in leg muscle was important to ascertain.
3.3. Identification of EV-D68 in lung tissues following infection with EV-D68.
All mice infected with EV-D68 MP30pp showed a moderate interstitial pneumonia characterized by perivascular and alveolar wall infiltration with mononuclear inflammatory cells. Lungs from infected and sham-infected mice were harvested at day 2 post-infection for immunofluorescence staining (IFA) with antibodies directed to EV-D68 VP2 capsid protein. Immunoreactivity was observed in lung tissue from infected mice (Figure 6). Samples from liver, kidney and spleen were also evaluated by IFA, but histological lesions were not observed (data not shown). The entire tissue sample containing spinal cord, brain and leg muscle were used to obtain virus titers, therefore these samples were not evaluated by IFA.
3.4. Lung cytokines/chemokines following infection with EV-D68.
Pro-inflammatory cytokines and chemokines in lung samples were evaluated by multiplex ELISA after infection with mouse-adapted EV-D68. Following infection with the highest dose of EV-D68 (106.5 CCID50/mouse), all cytokines and chemokines increased on day 1 p.i., except for IL-17 (Supplementary Figures S1 to S4). MCP-1 and IL-6 showed the greatest change compared to uninfected controls (baseline), with 48-fold and 140-fold increases, respectively. In addition, IL-1β, IL-2, and IL-5 increased between 10-fold and 20-fold compared to baseline (Supplementary Figures S1 to S4). This rapid response is characteristic of EV-D68 infections and has been described for the cotton rat by Patel et al. (2016). Several cytokines, including IL-1β, IL-2, IL-4, IL-17, and GM-CSF showed significant increases on day 5 p.i. following challenge with the low dose challenge, and may represent a challenge dose effect (Supplementary Figures S1 to S4).
3.5. Lung function parameters following infection with EV-D68.
To develop a practical model for evaluation of antiviral therapeutics, we determined disease signs that would not require sacrifice of infected mice. Julander, et al. previously described the use of plethysmography for evaluation of lung function following respiratory virus infection in the mouse (Julander, 2011). Therefore, we used plethysmography to assess lung function after mouse-adapted EV-D68 infection. Four groups of eight mice (4 males and 4 females per group) were used to evaluate the impact of EV-D68 infection on lung function as measured by plethysmography. A sham-infected group was used as baseline for plethysmography measurements. In this study, mice receiving highest dose of EV-D68 showed an increase in Penh on days 6 and 7 compared to baseline (Figure 7). Penh has been identified as a measure of airway distress (Julander et al., 2011; Loddo et al., 1962). We consider the increase in Penh as an indicator of morbidity following infection, which is in agreement with the increased lesion scores and cytokine concentrations observed in the lung after EV-D68 infection. Several additional parameters of lung function showed significant differences from controls in this study, including decreases in expiratory time on days 2-7, increases in minute volume on days 6-7, and increases in frequency on days 2-6 (Supplementary Figures S5 to S7). However, only Penh showed consistent increases following EV-D68 infection in multiple studies.
3.6. In vitro antiviral comparison.
Because of similarities between EV-D68 and rhinoviruses, including their replication temperature in cell culture (Oberste et al., 2004), acid-lability (Oberste et al., 2004), and the fact that both types of virus cause respiratory disease (Foster et al., 2015; Zheng et al., 2017), we hypothesized that this new mouse model for EV-D68 could also be used as a model for rhinovirus infections. In addition, we previously reported the similarity in the in vitro antiviral activity profile between EV-D68 and rhinovirus 87 (Smee et al., 2016). However, after publication of those data, we learned that rhinovirus 87 had been reclassified as enterovirus D68 (Palmenberg and Gern, 2015). Therefore, we completed another in vitro antiviral comparison using EV-D68 MP0 (non-adapted), MP30PP and rhinovirus 14 (RV-14) to determine if our hypothesis held any merit as to the potential application of this mouse model for rhinoviruses. The results from this in vitro antiviral comparison are shown in Table 1. Rupintrivir was the most effective against the three viruses with selectivity indices (SI = CC50 / EC50) of >3333, >2500, and >333, respectively. Enviroxime and pleconaril were also highly active with selectivity indices between 23.2 and 131 against the three viruses. Guanidine, a known inhibitor of poliovirus (Loddo et al., 1962), was previously evaluated against strains of EV-D68 and shown to be highly active (Smee et al., 2016). That antiviral activity was confirmed against EV-D68 MP0 and the mouse-adapted EV-D68 MP30pp virus with selectivity indices of 31.7 and 23.3 against the two EV-68 viruses, and 37.6 against rhinovirus 14. Following mouse adaptation of EV-D68 the selectivity index decreased for Enviroxime, Guanidine and Rupintravir.
Table 1:
Compound | No
Virus CC50a |
EV-D68/Missouri (MP0) |
EV-D68/Missouri (MP30PP) |
Rhinovirus-14 | ||||
---|---|---|---|---|---|---|---|---|
RD | Hela-Ohio | EC50b | SIc | EC50b | SIc | EC50b | SId | |
Enviroxime | 14.1 ± 4.8 | 22.3 ± 9.7 | 0.03 ± 0.0 | 469 | 0.07 ± 0.03 | 201 | 0.13 ± 0.1 | 108 |
Pleconaril | 10.5 ± 3.5 | 4.7 ± 2.3 | 0.08 ± 0.0 | 131 | 0.08 ± 0.00 | 131 | 0.08 ± 0.0 | 59.1 |
Guanidine | 1420 ± 315 | 3030. ± 577 | 44.7 ± 11.9 | 31.7 | 61.0 ± 10.5 | 23.3 | 80.7 ± 16.2 | 37.6 |
Rupintrivir | >1.0 ± 0.0 | >1.0 ± 0.0 | 0.0003 ± 0.0 | >3333 | 0.0004 ± 0.0001 | >2500 | 0.003 ± 0.0004 | >333 |
Units in μM. Enterovirus D68 tested on RD cells, Rhinovirus-14 tested on Hela-Ohio cells.
50% cytotoxic concentration (CC50) ± standard deviation from 3 independent experiments.
50% effective virus-inhibitory concentration ± standard deviation from 3 independent experiments.
SI-Selectivity Index = CC50 / EC50 using the CC50 in RD cells.
SI-Selectivity Index = CC50 / EC50 using the CC50 in Hel-Ohio cells
3.7. Nucleotide and predicted amino acid changes in the mouse adapted EV-D68 virus
The complete sequence of the mouse-adapted virus (MP30PP) was submitted to GenBank (Accession Number MH708882). Adaptation of the EV-D68 virus to the lungs of AG129 mice produced a total of 22 amino acid changes, nine of which are predicted to produce changes in the amino acid sequence of the EV-D68 proteins. A summary of nucleotide and predicted amino acid changes is shown in Table 2. One amino acid change is predicted in the VP4 protein, two in the VP3 protein, four in the VP1 protein, one in the 2A protein, and one in the 3D protein. A visual representation of these amino acid changes in relation to the EV-D68 genome is shown in Fig. 8. In addition, five nucleotide changes were detected in the 50 untranslated region (50UTR) corresponding to the highly conserved internal ribosome entry site (IRES).
Table 2:
Position of Mutation | Nucleotide Change | Predicted Amino Acid Change |
Location in Viral Polyprotein |
---|---|---|---|
115 | G to T | None | 5’UTR |
136 | C to T | None | 5’UTR |
197 | A to G | None | 5’UTR |
473 | G to A | None | 5’UTR |
634 | A to G | None | 5’UTR |
875 | T to C | V67A | VP4 |
1143 | T to C | None | VP2 |
1888 | G to A | V88I | VP3 |
1935 | T to C | None | VP3 |
2076 | T to C | None | VP3 |
2242 | T to G | S206A | VP3 |
2333 | T to C | L1P | VP1 |
2397 | C to T | None | VP1 |
2417 | A to G | N29S | VP1 |
2446 | A to C | N39H | VP1 |
3160 | G to A | A277T | VP1 |
3390 | T to C | None | 2A |
3682 | A to G | T142A | 2A |
3835 | C to T | None | 2B |
4587 | A to G | None | 2C |
6704 | A to G | N249S | 3D |
7119 | A to G | None | 3D |
4. Discussion
To develop antiviral therapies and vaccines for EV-D68 infections, use of an animal model is critical. Recently, three models have been described. The first model takes advantage of the abundance of α2,6 linked sialic acid receptors in the respiratory system of the cotton rat (Patel et al., 2016). In this model, using non-adapted EV-D68, Patel et al. (2016)showed a “mild cumulative pathology” in the lungs (Matsumoto et al., 2016; Patel et al., 2016). In addition, MCP-1 peaked at 4-hours post-virus exposure using the VANBT/1 strain of EV-D68 (Patel et al., 2016). However, after the initial peak, cytokine levels decreased rapidly.
A second model utilized neonatal Swiss-Webster mice (Hixon et al., 2017). In this model, five different strains of EV-D68 were shown to induce limb paralysis and death in two-day-old mouse pups following intracerebral injection of virus. This model provides evidence that EV-D68 infection can cause neurological disease. In addition, Hixon et al. (2017) demonstrated that serum containing EV-D68 antibodies was able to confer immunity to mice following treatment with serum 1 day prior to infection (Oberste et al., 2004).
The third model utilized ferrets infected intranasally with the Fermon strain of EV-D68. EV-D68 was observed in nasal washes, throat swabs, blood, lymph node, lungs, and feces by qPCR (Zheng et al., 2017). In addition, EV-D68 caused a respiratory infection as seen in the lower respiratory tract by histological analysis (Flaño et al., 2009).
This is the first report of a respiratory disease model for EV-D68 infection in mice. The model developed in our laboratory demonstrates an increased ability of mouse-adapted virus to infect 4-week old AG129 mice. In addition, the model shows rapid replication of virus in the lungs and spread to blood and other tissues in the mouse. These results are consistent with the acute nature of human infections (Martin et al., 2016; Matsumoto et al., 2016; Schuster et al., 2015). In addition, the longest average stay for patients in the hospital was 4.75 days (Foster et al., 2015), suggesting an uncomplicated EV-D68 infection replicates and spreads rapidly, and then resolves in about one week. Our model also uses the natural route of infection and is more amenable to the evaluation of antiviral therapies. The cotton rat model requires intrathecal injection and the Swiss-Webster mouse model requires neonatal mice that are difficult to work with. In addition, the ferret model is costly and not available in many laboratories.
Following intranasal inoculation of mouse-adapted EV-D68, virus replicates to high titers in the lung and spreads rapidly to the blood and other tissues, including the CNS, suggesting that EV-D68 is capable of causing neurological disease along with the respiratory disease. In addition, we observed altered lung function (Penh) following infection with mouse-adapted EV-D68, and an increase in proinflammatory cytokines in the lung, especially MCP-1 and IL-6, indicative of an active infection following challenge. Despite early viral replication and cytokine responses, an increase in Penh was not observed until days six and seven post-infection. We suspect that viral replication and the cytokine response are leading to pathological changes which are then observed in the Penh response. By day nine, virus titers were no longer detected in lung tissue and permanent lung tissue damage was not observed with histopathology.
Since EV-D68 shares biological features with both enteroviruses and rhinoviruses including their replication temperature in cell culture (Oberste et al., 2004), acid-lability (Oberste et al., 2004), both types of virus cause respiratory disease (Foster et al., 2015; Zheng et al., 2017), and similarity in the in vitro antiviral activity profile (Smee et al., 2016). Since no practical mouse models for human rhinovirus infections are available (Bartlett et al., 2015), we suggest that this model for EV-D68 respiratory disease may also serve as a model for rhinovirus infections. In addition, as vaccines for rhinoviruses have been difficult to develop, antiviral therapies may play a larger role in patient treatment. Therefore, future studies will evaluate antiviral therapies in this model for EV-D68 infection and potentially for rhinovirus 14.
Mouse-adaptation caused 22 nucleotide changes within the EVD68 genome, nine of which are predicted to result in amino acid changes. As may be expected, the majority of these predicted amino acid changes occur in the four structural proteins (VP1-VP4) of EVD68. Seven of the nine predicted amino acid changes are found within the EV-D68 structural proteins which may indicate a change in viral surface structure to utilize mouse cellular receptors. The effects of the other two predicted amino acid changes which occur in the 2A and 3D regions are less obvious. While the mutation in the 3D polymerase may assist viral replication in mouse cells, 2A protease is largely responsible for cleavage of the viral polyprotein into protein subunits.
In addition, future studies will determine if treatment regimens that reduce or prevent viremia can also prevent the onset of neurological signs following EV-D68 infection, as a concurrent manuscript describes the neurological model following intraperitoneal infection of mouse-adapted EV-D68 in 10-day-old AG129 mice (Hurst et al., 2019). In addition, sequence analyses of mouse-passaged virus has been initiated and will be published upon completion.
5. Conclusions
This is the first report of a respiratory disease model for EV-D68 infection in 4-week-old AG129 mice. This model has the potential for evaluation of antiviral therapies for EV-D68 infections. In addition, this model has well-established endpoints including; viremia, altered lung function (Penh), increase in virus titers and pro-inflammatory cytokines in lung tissues, and histological changes in the lung that can be used to evaluate the effectiveness of experimental antiviral drugs.
Supplementary Material
Highlights:
This report describes the first respiratory model for EV-D68 infection in mice.
This report also describes the process of mouse-adaptation of EV-D68.
After intranasal inoculation of EV-D68, virus replicates to high titers in the lung and spreads rapidly to other tissues.
Clinical signs include viremia and disturbances in lung function “enhanced pause” (Penh) by plethysmography.
Histological lesions show an interstitial pneumonia and lung lavage fluids show increased proinflammatory cytokines.
6. Acknowledgements
Funding for this research was provided by contract number HHSN272201000039I, Task Order A79, from the Virology Branch, Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, USA.
Footnotes
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Conflicts of Interest
The authors declare no conflict of interest.
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