TABLE 1.
YenR-LBD | YenR-LBD-OHHL | CepR2 | |
---|---|---|---|
Data collection | |||
Space group | C2221 | C2221 | P21 |
Cell dimensions | |||
a, b, c (Å) | 64.37, 123.40, 106.91 | 63.88, 122.78, 107.60 | 120.28, 74.59, 118.03 |
α, β, γ (°) | 90, 90, 90 | 90, 90, 90 | 90, 117.3, 90 |
Protein molecules/ASU | 2 | 2 | 6 |
Temperature (K) | 100 | 100 | 100 |
Radiation source | APS, 19-ID | APS, 19-ID | APS, 19-ID |
Wavelength (Å) | 0.9792 | 0.9792 | 0.9792 |
Resolution (Å)a | 2.20 (2.23–2.20) | 2.00 (2.03–2.00) | 2.75 (2.80–2.75) |
Unique reflections | 21587 (1061) | 29198 (1422) | 48922 (2403) |
Rmergeb | 0.098 (0.703) | 0.082 (0.616) | 0.095 (0.798) |
〈I〉/〈σI〉 | 17.1/3.1 | 23.9/5.3 | 12.6/1.9 |
Completeness (%) | 97.3 (95.8) | 99.9 (100) | 99.1 (99.4) |
Redundancy | 5.5 (4.9) | 6.5 (6.6) | 3.1 (2.9) |
Refinement | |||
Resolution (Å) | 2.20 | 2.00 | 2.75 |
Reflections: work/test set | 19505/1054 | 26360/2774 | 40872/2158 |
Rcryst/Rfreec | 0.175/0.214 | 0.171/0.203 | 0.184/0.218 |
No. of atoms: protein/ligandsd/water | 2690/64/75 | 2718/93/136 | 7911/61/100 |
Average B factor (Å2): protein/ligands/water | 45.9/77.0/43.1 | 34.7/49.2 (24.9)e/38.8 | 51.9/72.4/37.9 |
Bond lengths (Å) | 0.008 | 0.009 | 0.004 |
Bond angles (°) | 0.892 | 0.997 | 0.661 |
Ramachandran plot | |||
Most favored | 96.9 | 98.8 | 97.3 |
Outliers | 0.0 | 0.0 | 0.41 |
PDB code | 5L07 | 5L09 | 5L10 |
Crystallization conditions | 0.1 M sodium acetate pH 4.5, 2.5 M ammonium sulfate, 16°C | 0.1 M sodium acetate pH 4.5, 2.5 M ammonium sulfate, 16°C | 0.2 M Sodium formate, 20% w/v Polyethylene glycol 3,350 |
ASU, Asymmetric Unit.
Values in parentheses correspond to the highest-resolution shell.
Rmerge = ΣhklΣi|Ii(hkl)- 〈I(hkl)〉|/ΣhklΣi|〈Ii(hkl)〉|, where Ii(hkl) is the intensity for the ith measurement of an equivalent reflection with indices h, k, and l.
Rcryst = Σhkl||Fobs| - |Fcalc||/Σhkl |Fobs|, where Fobs and Fcalc are observed and calculated structure factors, respectively. Rfree is calculated analogously for the test reflections, which were randomly selected and excluded from the refinement.
Ligands include all atoms excluding protein and water atoms.
Average B factor for OHHL.