Summary
The Ventral Tegmental Area (VTA) is a midbrain region implicated in a variety of motivated behaviors. However, the function of VTA GABAergic (Vgat+) neurons remains poorly understood. Here, using three-dimensional motion capture, in vivo electrophysiology, calcium imaging, and optogenetics, we demonstrate a novel function of VTAVgat+ neurons. We found three distinct populations of neurons, each representing head angle about a principal axis of rotation: yaw, roll, and pitch. For each axis, opponent cell groups were found that increase firing when the head moves in one direction, and decrease firing in the opposite direction. Selective excitation and inhibition of VTAVgat+ neurons generate opposite rotational movements. Thus, VTAVgat+ neurons serve a critical role in the control of rotational kinematics while pursuing a moving target. This general-purpose steering function can guide animals toward desired spatial targets in any motivated behavior.
eTOC blurb
Hughes et al. demonstrate that VTA GABAergic projection neurons send reference commands for head angles. They describe neurons representing head angles for each of the three principal axes of rotation: yaw, roll and pitch. These results reveal a general mechanism for spatially precise steering that can be used in any motivated behavior.
Graphical Abstract
Introduction
The ventral tegmental area (VTA) has been implicated in motivated behaviors, addiction, and psychiatric disorders. Yet despite decades of research, the functional significance of the VTA is still poorly understood. Much research has focused on investigating the function of VTA dopamine neurons [1, 2]. By comparison, fewer studies have investigated VTA gamma-aminobutyric acid (GABA) neurons, the other main cell type in the VTA [3–6]. Importantly, the GABAergic population contains many projection neurons, which can inhibit their numerous downstream targets [7–9]. These projection neurons represent a major output of the limbic basal ganglia circuits.
VTA GABA neurons are thought to serve a role in aversive or defensive behaviors[5, 10], or to be involved in computing reward prediction errors [1]. Optogenetic activation of VTA GABA neurons disrupts reward-consumption [6]. In addition, putative VTA GABA neurons have also been found to correlate with locomotion[11, 12]. Clearly, VTA GABA neurons contribute to diverse behaviors, reflecting the heterogeneity of their anatomical connectivity. In this study, we used a novel continuous reward pursuit task to study the contribution of VTA GABA neurons to behavior, combining three-dimensional motion capture, electrophysiology, calcium imaging, and optogenetics.
Results
We wirelessly recorded single-unit activity in the VTA (n = 479 neurons, n = 20 mice) while mice performed a reward-tracking task during three-dimensional motion capture [13–16]. Because neurons in the VTA are difficult to classify based solely on spike waveform width and firing rate [17, 18], we confirmed our classification using optotagging in 6 mice, combining optogenetic activation and simultaneous electrophysiological recording. To selectively target inhibitory GABAergic neurons, we used the vesicular GABA transporter transgenic mice with Cre recombinase expression (Vgat-ires-Cre). We stimulated channelrhodopsin (ChR2) infected VTAVgat+ neurons in Vgat-ires-Cre mice while recording their single-unit activity (n = 18 neurons, Figure 1). Results from our opto-tagging experiments revealed distinct waveforms compared to the remaining population. Using an unsupervised clustering algorithm based on the first 10 principal components of the average waveforms, we identified two separate clusters. One of these clusters contained all of the optically identified GABAergic neurons, and was subsequently used to identify the remaining GABAergic population (Figures 1F–H).
During the reward-tracking task (Figures 2A and S1A), water-deprived mice were trained to continuously track a moving spout to receive a reward (12 μl of 10 % condensed milk, variable velocity at 5–50 mm/s). The spout moved continuously along either the horizontal (left and right) or vertical (up and down) axis during each session (Figures 2A and S2B). Rewards were continuously delivered every 500 ms if the mouse’s head was sufficiently close to the moving spout, defined by the following distances: X axis: 30 mm, Y axis: 20 mm, and Z axis: 30 mm from the reward spout. There were no discrete trials or cues that predicted rewards. When the mice stopped tracking, the spout continued to move but no rewards were delivered. Kinematic data was extracted from markers placed on the head by infrared cameras, allowing quantification of behavioral variables such as position, velocity, acceleration, and head angle changes during behavior.
During reward tracking, mice showed a characteristic head rotation about three principal axes: yaw, roll, and pitch (Figure 2B, Videos S1, S2, and S3). During horizontal spout movement, mice significantly altered the roll and yaw angle of their head in a rhythmic fashion depending on the location of the spout (Videos S1 and S2), while the pitch angle largely stayed the same. On the other hand, during vertical spout movement, the pitch angle would fluctuate significantly, but the roll and yaw angles remained relatively constant (Video S3).
To understand the relationship between VTA GABA activity and continuous behavior, we compared single unit activity with a number of recorded behavioral variables including the pitch, yaw, and roll angles (Figures S1C–E). We discovered that the firing rates of many recorded neurons exhibited extremely high correlations with instantaneous head angles (Figures 2C–H and S2). Strikingly, we were able to identify three distinct classes of VTA GABA neurons corresponding to the yaw, roll, and pitch axes of rotation (Figure 2).
For each class of neurons, the firing rate varied monotonically with the head angle, and was selective for a single axis of rotation (Figures 2C–H). For example, a given neuron would increase its firing rate when the head was tilting to the left, and decrease firing when tilting to the right (Figure 2E). For each axis of rotation, we found two opponent populations based on the direction of rotation (Figure 3; Figure S3). There are thus six distinct populations of VTA GABA neurons related to instantaneous head angle. These correlations were extremely robust, and the linear relationship between firing rate and head angle was apparent even without averaging (Figure S2). A neuron that represents one axis of rotation would show weaker correlation with the other axes (Figures 4A–C). For both roll and yaw angle neurons, we found more neurons whose firing rates increased in the ipsiversive direction relative to the recording hemisphere (Figures 4I–J). Because the yaw and roll rotations co-varied when the animals were following a horizontally moving target, we compared their correlations with neural activity directly. For roll neurons, the average correlation with roll angle was significantly stronger than correlation with yaw angle (Figure 4B). This difference was also found for neurons classified as yaw neurons when compared to roll angle (Figure 4C). In order to examine whether we could predict head angle from all GABAergic neurons and not just those classified as head angle neurons, we used a machine learning algorithm (Support Vector Regression, SVR). With the SVR, we were able to decode actual head angle from all simultaneously recorded VTA neurons (Figure S4).
Next, we examined the activity of these head angle neurons at the time of reward delivery. Interestingly, the correlation between neural activity and head angle is degraded at the time of reward. Independently of their angle representation or direction preference, the neurons often show a very transient increase at the time of reward delivery (Figures 3D–F; Figures S3G–L). The response at reward delivery is similar to what was previously reported [17].
To further confirm that recorded neurons are GABAergic, we injected the fluorescent calcium indicator GCaMP7f into the VTA of Vgat-ires-Cre mice and used a miniature 1-photon microscope for chronic in vivo imaging (Figure 5A)[19–21]. This allowed us to simultaneously record calcium fluctuations (n = 158) and behavior. Consistent with our electrophysiological data, we found GABAergic neurons that were correlated with yaw, roll, and pitch (Figure 5; Figure S5). In addition, we found more yaw and roll neurons that increased their firing rates in the ipsiversive direction relative to the hemisphere being imaged (Figure S5I).
VTA GABA activity usually preceded head angle change (Figures 4D–G, Yaw: 117 ± 54 ms; Roll: 55 ± 23 ms; Pitch: 76 ± 29 ms). This suggests that these neurons send top down commands to generate movements with the specified rotational kinematics. To test this hypothesis, we used optogenetics to manipulate VTAVgat+ neurons, using ChR2 for excitation or soma-targeted Guillardia theta anion-conducting ChR2 (stGtACR2) for inhibition (Figure 6A; Vgat::ChR2VTA, n = 6; Vgat::stGtACR2VTA, n = 6; control, Vgat::eYFPVTA, n = 7). We found that both optogenetic excitation and inhibition of VTAVgat+ neurons produce opposite head rotations in all three axes (Figures 6C–D, Figures S6 and S7). During excitation, the head is lowered (pitch angle decreased relative to the longitudinal axis of the body), and the roll and yaw angles deviate towards the stimulated hemisphere (Figures 6C–D; Video S4). There is therefore a predominantly ipsiversive effect on head angle. During inhibition, the head is raised (increased pitch angle), and the roll and yaw angles deviated away from the stimulation hemisphere, showing a contraversive effect (Figures 6C–D, Video S5). These results agree with our electrophysiology and imaging results. Strikingly, parametric manipulations of pulse width quantitatively determined head angle (Figure 6C). The latency between stimulation and behavioral changes was approximately the same for each axis of rotation (Figures S6G–I, Yaw: 37 ± 5 ms; Roll: 37 ± 4 ms; Pitch: 39 ms ± 6 ms). In addition, pulse frequency manipulations with ChR2 showed a linear relationship between frequency and head angle (Figures S6D–F).
Furthermore, selective optogenetic excitation of VTAVgat+ neurons reduced reward consumption, as previously reported [6]. This appeared to be caused by an increase in the distance between their head and the spout during stimulation (Figure 7K). Using our stimulation parameters, there did not appear to be significant aversion induced by photo-stimulation. We confirmed this in a real-time place preference assay, in which entering one side of the arena results in sustained optogenetic stimulation of the VTAVgat+ neurons (Figure 7).
Discussion
Collectively, our results show for the first time that VTA GABA neurons represent rotational kinematics of the head, and shed light on the computational role of these neurons. The major advantage of our approach is the lack of head restraint, so that the relationship between neural activity and free behavior is revealed for the first time. We found three distinct classes: the instantaneous firing rate of each preferentially represents a separate angle (yaw, roll, and pitch). Furthermore, each class can be further divided into populations that increase firing in a given head tilt direction. It appears that each population is primarily responsible for tilt in a single direction. In order to achieve bi-directional control within the system, opponent populations are needed to increase or decrease head angle about a particular axis of rotation. Moreover, our findings show that VTA GABA neurons not only represent head angles, but also generate desired angles during continuous behavior. This is possible if their output, acting as reference signals, quantitatively dictate the sensory states to be reached by lower level control systems [22, 23].
While our results demonstrate the role of VTA GABA neurons in control of head orientation, it does not follow that this is their sole function. Much like their neighboring dopamine neurons, GABA neurons receive a diverse set of inputs and have wide-ranging connections to many different brain regions, suggesting that they could be functionally heterogeneous [7, 24].
Given the popular view that the VTA is crucial for motivated behaviors, one obvious question is how the present findings could be related to the previous literature. A few studies have examined the role of the VTA GABA neurons in behavior using cell-type specific manipulations. However, because they either relied on head-fixed preparations, or used behavioral measures such as place preference, average speed, or distance traveled, they were not able to show the coordination of head rotation kinematics we demonstrate here [5, 6].
Previous studies found that stimulation of VTA GABA neurons interrupted reward consumption. This is not surprising given our finding that optogenetic manipulation of these neurons predictably resulted in head deviation. Even in head-fixed mice, it is possible that such deviations are sufficient to interrupt reward consumption. We also found that consumption was reduced during optogenetic stimulation, primarily due to stimulation-induced head rotation, which increases distance from the reward spout (Figure 7K).
A popular hypothesis used to explain the role of VTA dopamine neurons is the reward prediction error hypothesis based on the reinforcement learning paradigm [25]. According to this hypothesis, phasic dopamine activity reflects the difference between actual and predicted rewards. Previous work also suggests that, by inhibiting DA neurons, VTA GABA neurons could perform a subtraction needed for calculation of prediction errors [1]. While our results do not rule out this role, they show for the first time that these neurons directly command the actual behavior in a spatially precise manner (Figure 6). Our task design allowed us to disassociate reward prediction error from head rotation. There is no conditioned stimulus that predicted reward delivery; rather the mice received rewards continuously as long as they were pursuing the target. Their expectation of reward was thus identical regardless of the direction of pursuit.
In addition, several features of our results are incompatible with the reward prediction error hypothesis. First, the three principal axes of rotation are independent of reward prediction. Second, for each axis of rotation, VTA GABA neurons displayed clear direction selectivity, and opponent signaling: for example, we found two opponent populations of yaw neurons, one increasing firing with leftward tilt and the other increasing firing with rightward tilt (Figure 3C). This is consistent with what has previously been found in the substantia nigra [26–28]. Finally, we found that the effective zero (no rotation or neutral position) for the rotation-related neurons is found close to the middle of the range of firing rates (Figure 3C), which explains the tonic firing rate of VTA GABA neurons. Increases and decreases from this zero value represent the signals related to rotation about a particular axis[15, 28]. No version of the reward prediction error hypothesis predicts these features. Reinforcement learning in general does not attempt to address how behavior is actually generated. The behavioral policies in such models are all-ornone (action or no action), rather than continuous (degree of tilt in a given direction along a given axis) and spatially defined. It should also be noted that, given the strong connections between GABAergic and dopaminergic neurons in the VTA, it is possible that the dopaminergic neurons would also play a role in controlling head orientation. Previous work demonstrated that dopaminergic neurons in the neighboring substantia nigra pars compacta can signal movement velocity in a direction-specific manner [29], but the role of VTA dopaminergic neurons in movement remains poorly defined. Future studies will be needed to understand the interaction between different cell types in the VTA and their coordinated contributions to behavior.
Our results also suggest that a separate process related to the consummatory phase of behavior may take over and command VTA neurons at the time of reward. This may explain why activity at the time of reward delivery is often seen in these neurons, and why the correlations with head angle seem to be degraded at the time of reward receipt (Figures 3D–F and S3G–L). The mechanisms underlying the appetitive and consummatory phases of motivated behaviors must be precisely coordinated and overlap in time to achieve smooth control.
While head rotation control is essential for most motivated behaviors, it has largely been neglected in previous studies. Brain systems for precise orienting and steering are necessary for nearly all aversive and appetitive behaviors, whether seeking reward or avoiding harm. For example, in consummatory behavior such as eating, the mouse must make continuous and subtle adjustments of the head. Furthermore, all escape behaviors require rapid orienting movements in order to successfully evade threatening stimuli. Thus, conflicting previous findings on the contribution of the VTA to appetitive and aversive processes are consistent with a more general role in orientation and steering, as suggested by our findings. Our results could also explain why others have found that optogenetic excitation of VTA GABA neurons is aversive[5]. Excessive vestibular disturbance, for example, can be highly aversive and can result in disorientation and nausea. Indeed, during our optogenetic experiments, the mice sometimes showed urination and defecation in addition to the head angle changes. However, it is unclear that activation of VTA GABA neurons within their physiological firing rates produces aversion. Neurons that we classified as GABAergic had an average firing rate of 20.3 ± 1.04 Hz, consistent with what has previously been reported[17]. Our stimulation parameters therefore were more physiological (10–40 Hz) than those used in previous work (constant stimulation), which could also explain the lack of a clear aversive effect here [5]. Furthermore, it has also recently been discovered that constant light stimulation over several seconds can produce inhibition in neurons without opsins due to excessive heat[30]. As a result, constant stimulation used in previous work could introduce a significant confound of other VTA neuronal populations being inhibited.
Implementing fine control of the head, given the multiple degrees of freedom involved, presents a significant computational challenge. Our results suggest that the brain solves this control problem using a similar strategy found in airplanes or ships, using independent control of three orthogonal axes of rotation. Distinct neuronal populations in the VTA are responsible for independent control of rotation along pitch, yaw, and roll. The observation that activity in these cells generally leads the kinematic variable suggests that VTA neurons do not simply provide perceptual representations of head angle. The signals are not predictions of future perceptual signals, but commands that dictate the perceptions to be reached, as demonstrated by our optogenetic stimulation results[23]. The amount of stimulation quantitatively determines the head angle achieved (Figures 6 and S6). In normal movements, presumably all the populations are engaged, though to different extents depending on the degree of rotation along each axis.
Interestingly, the VTA is directly connected to key nuclei in the head direction circuit[31, 32]. Angular head velocity cells have been reported in the dorsal tegmental nucleus, superior colliculus, and the lateral habenula, which are all connected to the VTA[9, 32–34]. Thus, VTA neurons are in a position to integrate signals representing angular head velocity and generate head angle representations. The interactions between the VTA and the other components of the head steering circuit remain to be investigated.
While our results shed light on the computational role of VTA GABAergic neurons, it is important to note that there are important methodological limitations in our task design. For example, the animal’s head movements were restricted to a relatively small degree of head rotation relative to their natural capabilities. In addition, many behavioral variables, such as whisker deflection or visual input, could potentially introduce confounds, and thus need to be further investigated in future work.
STAR Methods
Lead Contact and Materials Availability
Further information and requests for resources should be directed to the Lead Contact, Dr. Henry Yin (hy43@duke.edu). This study did not generate new unique reagents.
Experimental Model and Subject Details
All experimental procedures were approved by the Animal Care and Use Committee at Duke University. Both male and female C57BL/6J and Vgat-ires-Cre mice (3–8 months) acquired from Jackson Laboratory were used. Mice were maintained on a 12:12 light cycle and tested during the light phase. Mice used for in vivo electrophysiology and calcium imaging experiments were singly housed. All other mice were group housed. During behavioral experiments, mice were placed on water restriction. After training sessions, mice had free access to water for approximately 2 hours and were maintained at approximately 85–90% of their initial weights.
Method Details
Viral Constructs
rAAV5.EF1α.DIO.hChR2(H134R).eYFP and rAAV5.EF1α.DIO.eYFP were obtained from the Duke University Vector Core. pAAV-hSyn1-SIO-stGtACR2-FusionRed (Mahn et al., 2018) and pGP-AAV-syn-jGCaMP7f-WPRE (Dana et al., 2018) were obtained from Addgene. pGP-AAV-syn-jGCaMP7f-WPRE was from Douglas Kim (Addgene viral prep # 104488-AAV1; http://n2t.net/addgene:104488; RRID:Addgene_104488). pAAV_hSyn1-SIO-stGtACR2-FusionRed was from Ofer Yizhar (Addgene viral prep # 105677-AAV1; http://n2t.net/addgene:105677; RRID:Addgene_105677).
Surgery
Mice were anesthetized with 2.0 to 3.0% isoflurane mixed with 0.60 L/min of oxygen for surgical procedures and placed into a stereotactic frame (David Kopf Instruments, Tujunga, CA). Meloxicam (2 mg/kg) and topical bupivacaine (0.20 mL) were administered prior to incision. C57BL/6J mice (n = 26; 14 males, 12 females) were used for electrophysiology experiments. 16 channel electrode arrays (4×4 fixed or drivable) were lowered into the VTA (AP: 3.2 – 3.4 relative to bregma, ML: 0.4 – 0.6 relative to bregma, DV: 4.0 – 4.4 relative to brain surface) at a rate of 300 μm/min and grounded to a cranial crew. For optrode experiments, 200 nL of DIO-ChR2 was unilaterally injected into the VTA (AP: 3.2 – 3.4 relative to bregma, ML: 0.4 – 0.6 relative to bregma, DV: 4.0 – 4.4 relative to brain surface) of Vgat-ires-Cre mice using a microinjector (Nanoject 3000, Drummond Scientific) at a rate of 1 nL/s. The pipette was left to sit for 10 minutes at the injection site to allow absorption of the virus and prevent leakage. Optrodes were 4×4 microwire arrays (Neurophysiology Instruments) with a custom-made optic fiber positioned at an angle on the long side of the connector to maximize the number of neurons stimulated under the electrode array (Sparta et al., 2012). For optogenetic stimulation experiments, 200–300 nL of either AAV-DIO-ChR2 for excitation or AAV-SIO-stGtACR2 for inhibition was bilaterally injected into the VTA of Vgat-ires-Cre mice (n = 23; 11 males, 12 females) using the coordinates previously described. Custom-made optic fibers (5 – 6 mm length below ferrule, >80% transmittance, 105 μm core diameter) were then implanted directly above the VTA at an angle (AP: 3.2 – 3.4 with respect to bregma, ML: 1.6 with respect to bregma, DV: 3.8 from the brain surface; 15°). Fibers and electrodes were secured in place with dental acrylic adhered to skull screws. For calcium imaging experiments, Vgat-ires-Cre mice (n = 7; 3 males, 4 females) were unilaterally injected with 400 nL of AAV1-syn-jGCaMP7f-WPRE into the VTA at the coordinates and injection parameters previously described. A gradient-index (GRIN) lens (Inscopix, 0.6mm × 7.1mm) was then slowly implanted above the VTA (AP: −3.2 – 3.5 with respect to bregma, ML: 0.4 – 0.8 with respect to bregma, DV: 4.0 from the brain surface) over the course of an hour. The lens was secured to implanted cranial screws with dental cement and covered with Kwik-Sil silicone elastomer (World Precision Instruments) to protect the surface of the lens. All mice were fitted with a headbar that holds infrared markers for motion capture. Both heterozygous and homozygous Vgat-ires-Cre mice were used. Mice were allowed to recover for two weeks after surgery before experimentation.
Behavioral Tasks and Analysis
Reward Tracking Task
Mice were placed on a custom-built platform (40 cm tall) and the platform was placed several cm away from a spout that was controlled by a stepper motor (Bipolar, 56.3 × 56.3 mm, DC 1.4A, 2.9Ω, 1.8 degree / step, Oriental motor, USA). To track movement, two infrared reflective markers (B & L Engineering) were attached to each side of a custom-made head bar attached to the dental cement skullcap of mice. A third marker was attached to either the top of the wireless electrode head stage, the top of the miniscope, or on a third bar attached to the skullcap. The reward position was tracked by placing a reflective marker approximately 20 mm away from the reward spout. Eight Raptor-H Digital infrared cameras were used to capture the movement of reflective markers during tracking. The data was then processed in Cortex (Motion Analysis, CA) and converted into Cartesian coordinates. Both reward delivery and the movement of the reward spout were controlled using custom MATLAB scripts. The program would deliver a 10% solution of condensed milk (12 μl every 500 ms) if mice tracked the moving spout (5–50 mm/sec) within a narrow window of Cartesian coordinates (X axis: 30 mm, Y axis: 20 mm, Z axis: 30 mm from the reward spout marker. During three-dimensional motion capture, the reflective markers on the head were used to compute angle changes. When the angles are zero, the animal’s head is flat and in a ‘neutral’ position. To calculate the changes in roll and yaw angles, the position coordinates for a single axis were obtained from the three-dimensional motion tracking software. The absolute distance between the markers (one on each side of the head) allowed calculation of the adjacent length of a triangle. Once all vector coordinates were obtained for one axis (e.g. x-axis), the change in marker position was computed for each time step, providing the opposite length of the triangle. As the distance between markers is the adjacent length, the arc tangent was then computed and converted into degrees for instantaneous angle changes using a custom MATLAB script. For pitch angle, the two side head bar markers and the third top marker created a triangle in three-dimensional Cartesian space. Given the midpoint between two side markers, the MATLAB function that converts Cartesian coordinates to spherical coordinates (car2sph) was used to compute the instantaneous pitch angle.
Real Time Conditioned Place Preference
Mice were placed on one side of a rectangular open field arena (45 cm L, 25 cm W, 35 cm H) that was partitioned in the middle by two 8 cm wide walls with a 9 cm opening. Videos were recorded with a camera that was placed 0.7 meters above the chamber and connected to a computer. Two-dimensional coordinates based on the center of mass of each mouse were collected at 50 f/s. An open source software program (Bonsai) using a custom script tracked movements for 30 minutes[35]. A session consisted of 3 separate, 10 min epochs: a pre-stimulation epoch with no stimulation, a stimulation epoch where unilateral stimulation occurred only if the mice were on one half of the arena, and a post-stimulation epoch of no stimulation. Stimulation was produced using a laser attached to two Arduinos: one received commands from the computer, and the other controlled the frequency output of the laser using TTL pulses. Data were analyzed using a custom Matlab script.
Wireless in Vivo Electrophysiology
For electrophysiological recordings, either 4×4 16-channel fixed electrode (n = 23) or drivable 16-channel arrays (n = 3) (Innovative Neurophysiology, Inc.) were used. Driveable electrodes were moved 50–100 μm each session. If neurons in the same channel displayed a significantly similar waveform and ISI distribution after electrodes movement, they were excluded from analysis. Fixed arrays were constructed of tungsten wires (35 μm diameter, 150 μm spacing, 5–6 mm length). Drivable electrodes were single-drive movable micro-bundles (1 × 16) with 23 μm diameter electrodes driven through a guide cannula. VTA neural recordings were performed as previously described. Briefly, a miniaturized wireless head stage (Triangle Biosystems) or a tethered headstage interfaced with a Cerebrus data acquisition system (Blackrock Microsystems) was used to record activity during freely moving behavior. Electrophysiology Data were filtered with both analog and digital bandpass filters (analog highpass 1st order Butterworth filter at 0.3 Hz, analog lowpass 3rdorder Butterworth filter at 7.5 kHz, digital highpass 4th order Butterworth filter at 250 Hz). Filtered data was then sorted using Offline Sorter (Plexon) and analyzed Neuroexplorer (Nexus). To qualify as single unit activity, the signal must have had a 3:1 signal-to-noise ratio, a refractory period of at least 800 μs and consistent waveforms throughout the session.
Optogenetic Stimulation and three-dimensional Motion Tracking
Vgat-ires-cre mice were used for optogenetic stimulation experiments. Unilateral stimulation data were taken from the same bilaterally implanted animal on separate experimental days. The output from the optic fiber tip was measured (PM120VA, ThorLabs) before each experimental session to obtain a power between 8–12 mW (i.e. ~10 mW power delivered to the stimulation site with a transmittance of ~85%). A MATLAB program interfaced to a National Instruments DAQ triggered square pulse (5 ms – 500 ms). Head movements were captured at 100 Hz in a Cartesian plane with eight Raptor-H digital infrared cameras (Motion Analysis, CA). To calculate the deviation of the head angle for pitch, roll, and yaw due to optogenetic stimulation, we first recorded the head angle during the 100 ms window prior to stimulation, and then compared it to the asymptotic level of head angle 100 ms after stimulation, or 200 ms after the end of the stimulation. For latency between stimulation and head angle changes, a 500 ms baseline was used for comparison.
In Vivo Calcium Imaging
Approximately 3 weeks after viral injection, fluorescence was checked using a custom modified UCLA miniscope designed to hold a relay lens (1.8× 4.3 mm, Edmund Optics)[19]. A baseplate was then fixed over the implanted GRIN lens using dental cement. During behavioral testing, one reflective marker was adhered to top of the miniscope, and two were adhered to the side of the head bar to obtain pitch, roll and yaw angles. For calcium imaging analysis, all videos were preprocessed using Mosaic (Inscopix) for motion correction and spatial binning, and then subsequently analyzed using a custom MATLAB Script. Data were then processed using a constrained non-negative matrix factorization (CNMF analysis) for denoising, deconvolving and demixing the data [36]. This method subtracts out background fluorescence, and accurately localizes and segregates neuronal activity (CNMF Parameters: data was captured and analyzed at 30 frames per second; minimum PNR ratio was 10% below maximum for each animal, with an average of 8; minimum correlational value was 10% below maximum for each animal, with an average of 0.85. The gSiz ranged from 10–20, with the gSig range of 3 to 10). Neuroexplorer was then used to analyze calcium activity and behavioral variables.
Histology
To confirm viral expression and optic fiber and electrode placement, mice were transcardially perfused with 0.1M phosphate buffered saline (PBS) followed by 4% paraformaldehyde (PFA). To aid placement, heads were stored in 4% PFA with 30% sucrose for 72 hrs. Brains were then post-fixed for 24 hours in 30% sucrose prior to cryostat sectioning (Leica CM1850) at 60 μm coronally. Fiber, electrodes, and lens implantation sites were verified after sections were processed for the presence of cytochrome oxidase to visualize cytoarchitecture by rinsing in 0.1M PB before incubating in a diaminobenzidine, cytochrome C, and sucrose solution for ~2 hours at room temperature. Mounted cytochrome oxidase sections were then dehydrated in 200 proof ethanol, defatted in xylene, and coverslipped with cytoseal. To confirm eYFP and FusionRed coexpression in VTA Vgat+ cells, as well as labeling in the vicinity of dopaminergic cells of Vgat-ires-Cre transgenic mice, select sections were rinsed in 0.1M PBS for 20 min before being placed in a PBS-based blocking solution containing 5% goat serum and 0.25% Triton X-100 at room temperature for 1 hr. Sections were then incubated with a primary antibody (polyclonal rabbit anti-Vgat, 1:200 dilution, ThermoFisher, catalog no. PA5–27569; polyclonal rabbit anti-Dopamine transporter, 1:200 dilution, abcam, catalog no. 18441; polyclonal rabbit anti-Tyrosine hydroxylase, 1:200 dilution, Millipore, catalog no. AB152) in blocking solution overnight at 4 °C. Sections were then rinsed in PBS for 20 min before being placed in a secondary antibody used to visualize Vgat, DAT, or TH neurons in the VTA (goat anti-rabbit Alexa Fluor 594, 1:1000 dilution, abcam, catalog no. ab150080; goat anti-rabbit Alexa Fluor 488, 1:1000 dilution, abcam, catalog no. ab150077) for 1 hr at room temperature. Sections for fluorescent microscopy were mounted and immediately coverslipped with Fluoromount G with DAPI medium (Electron Microscopy Sciences; catalog no. 17984–24). Brightfield images for placement verification were acquired and stitched using an Axio Imager.M1 upright microscope (Zeiss) and fluorescent images were acquired and stitched using a Z10 inverted microscope (Zeiss) (Figure S8).
GABAergic Neuron Classification
We used a Gaussian mixture model (GMM; Python sklearn package) to perform unsupervised clustering of neurons for classification without explicitly selecting a threshold, thus reducing bias. To perform this analysis, the mean waveforms were first normalized and fit with a principal component analysis. The top 10 components, which explained over 95% of the variance, were clustered using a GMM. Classifications were then used to analyze putative GABAergic neurons that were not optically tagged.
Support Vector Regression Decoder
Roll and yaw angle were decoded from the same horizontal tracking sessions, whereas pitch was decoded from a vertical tracking task. All of the data was binned into 50 ms intervals, and fit using support vector regression. As the number of neurons and the size of the training data can affect decoding performance, we limited our analysis to sessions where we had at least 6 classified GABAergic neurons, and at least 3.5 minutes of training data. For each of these sessions the model was trained on the first 60% of the data, and performance was evaluated on a contiguous set of held-out data (15%). Prior to fitting the model, the neural data was z-scored, and the head-angles were zero-centered. Using these methods, we were able to achieve good decoding performance, considering our relatively short sessions, and limited number of neurons [37].
Quantification and Statistical Analyses
All statistical analyses were performed in MATLAB and GraphPad Prism. A power analysis was not conducted to determine sample size a priori.
Correlation Analyses for Peri-event raster plots
Data were aligned either towards the spout moving in the rightward or downward direction, and were binned in 50 ms windows and Gaussian smoothed with a filter width of 5 bins, within a total window of 5 s in Neuroexplorer using a peri-event raster. Output data were then sorted according to the minimum and maximum head angles and the corresponding neural activity and collapsed into 10 data points each. These data were then exported into GraphPad Prism, where a correlation analysis was performed. For population analyses, neural data and behavioral variables binned at 50 ms were normalized using a Z-score analysis performed using a custom MATLAB script. The normalized data from each animal were then averaged together, where a population average was obtained for both the behavioral variables and the neural data. For correlation analysis with calcium imaging data, the analysis was identical to the one described above, but data were binned at 100 ms and Gaussian smoothed with a filter width of 10 bins. To classify neurons as pitch, roll, or yaw, the highest correlational value between neural data and the relevant behavioral variable was chosen.
Correlation Analyses Across Entire Behavioral Session
For each animal, neural data and continuously monitored yaw, roll, or pitch behavioral variables for the entire recording session were constructed using 10 ms time bins in NeuroExplorer and exported to MATLAB. Behavioral variables and neural activity were sorted according to magnitude (40 bins), and a Pearson Correlation between them was performed. For selected neurons, neural activity and behavioral variable information were filtered to exclude data when the animal was not tracking the reward spout. For shuffled data, we took behavioral variables and corresponding neural activity in 10 ms bins and used the Matlab function randperm to shuffle the data before analyzing the correlation between neural activity and behavior.
Cross-Correlation Analyses
For each animal, neural data and continuously monitored roll, yaw, or pitch behavioral variables for the entire recording session were extracted as described above. Using the behavioral variables and identified yaw, roll and pitch neurons from the correlation analyses, a custom MATLAB script was then utilized to perform cross-correlation analyses between the continuously monitored behavioral variables and neural activity. Cross-correlations were performed using MATLAB’s xcorr function, using the behavioral variable as the reference time-series, and the neural data as the shifted time series. Latencies were determined by finding the lag to the maximum value of the cross-correlation for positively correlated neurons and the lag to the minimum value for anti-correlated neurons. Cross-correlations were Z-score normalized and averaged together across data sets from all animals to obtain population data.
Data and Code Availability
Raw data from the current study were not deposited into a public repository due to the large size of the data sets, but are available from the corresponding author upon request.
Supplementary Material
Key Resources Table.
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Goat polyclonal anti-Rabbit Alexa Fluor 488 | Abcam | Cat# ab150077; RRID: AB_2630356 |
Goat polyclonal anti-Rabbit Alexa Fluor 594 | Abcam | Cat# ab150080; RRID: AB_2650602 |
Rabbit polyclonal anti-Dopamine Transporter | Abcam | Cat# ab111468; RRID: AB_11155293 |
Rabbit polyclonal anti-Tyrosine Hydroxylase | Millipore | Cat# 657012; RRID: AB_566341 |
Rabbit polyclonal anti-Vesicular GABA Transporter | Millipore | Cat# AB5062P; RRID: AB_2301998 |
Bacterial and Virus Strains | ||
rAAV5-EF1α-DIO-eYFP | Duke Vector Core | N/A |
rAAV5-EF1α-DIO-hChR2(H134R)-eYFP | Duke Vector Core | N/A |
pGP-AAV1-syn-jGCaMP7f-WPRE | Addgene | Cat# 10448-AAV1 |
AAV1-hSyn-SIO-stGtACR2-FusionRed | Addgene | Cat# 105677-AAV1 |
Experimental Models: Organisms/Strains | ||
Mouse: Vgat-ires-Cre: 1tm2(cre)Lowl/J | Jackson Laboratory | Mouse Strain: 016962 |
Mouse: C57BL/6J | Jackson Laboratory | Mouse Strain: 000664 |
Oligonucleotides | ||
Primers for Vgat-ires-Cre (F: GGTCGATGCAACGAGTGATGAGG) (R: GCCAGATTACGTATATCCTGGCAG) | Integrated DNA Technologies | N/A |
Software and Algorithms | ||
MATLAB 2016b | MathWorks | https://www.mathworks.com/products/new_products/release2015b.html |
Python 2.7 | Anaconda | https://www.anaconda.com/download/?lang=en-us |
Bonsai | Open Ephys | http://www.open-ephys.org/bonsai/ |
Offline Sorter 3.0 | Plexon | https://plexon.com/products/offline-sorter/ |
NeuroExplorer 4.0 | Nex Technologies | http://www.neuroexplorer.com/downloadspage/ |
Cortex 5.0 | MotionAnalysis | http://ftp.motionanalysis.com/html/industrial/cortex.html |
GraphPad Prism 8 | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
Other | ||
LED Driver | Thorlabs | LEDD1B |
DAPI Fluoromount-G | Southern Biotech | Cat# 0100-20 |
Highlight.
3 classes of VTA GABA neurons represent pitch, yaw, and roll head angles
Two opponent neuronal populations for each axis of rotation based on direction
Optogenetic excitation and inhibition produce opposite rotational movements.
Acknowledgments
We would like to thank Dr. Fengxia Allen, Dr. Guozhong Yu, Dr. Joseph Barter, Dr. Jinyong Zhang, Lee Christensen, and Murray Wickwire for their technical assistance. We would like to thank Dr. Joseph Barter for helpful comments and discussions. We also thank Dr. Nicole Calakos and Dr. Brandon Turner for providing the gCaMP7f virus. This work was supported by NIH grants DA040701, NS094754 and MH112883 to HHY.
Footnotes
Declaration of interests: The authors report no biomedical financial interests or potential conflict of interest
Publisher's Disclaimer: This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final citable form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.
References
- 1.Eshel N, Bukwich M, Rao V, Hemmelder V, Tian J, and Uchida N (2015). Arithmetic and local circuitry underlying dopamine prediction errors. Nature 525, 243–246. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 2.Lammel S, Lim BK, and Malenka RC (2014). Reward and aversion in a heterogeneous midbrain dopamine system. Neuropharmacology 76 Pt B, 351–359. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3.Fields HL, Hjelmstad GO, Margolis EB, and Nicola SM (2007). Ventral tegmental area neurons in learned appetitive behavior and positive reinforcement. Annual review of neuroscience 30, 289–316. [DOI] [PubMed] [Google Scholar]
- 4.Nair-Roberts RG, Chatelain-Badie SD, Benson E, White-Cooper H, Bolam JP, and Ungless MA (2008). Stereological estimates of dopaminergic, GABAergic and glutamatergic neurons in the ventral tegmental area, substantia nigra and retrorubral field in the rat. Neuroscience 152, 1024–1031. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.Tan KR, Yvon C, Turiault M, Mirzabekov JJ, Doehner J, Labouebe G, Deisseroth K, Tye KM, and Luscher C (2012). GABA neurons of the VTA drive conditioned place aversion. Neuron 73, 1173–1183. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.van Zessen R, Phillips JL, Budygin EA, and Stuber GD (2012). Activation of VTA GABA neurons disrupts reward consumption. Neuron 73, 1184–1194. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7.Beier KT, Gao XJ, Xie S, DeLoach KE, Malenka RC, and Luo L (2019). Topological Organization of Ventral Tegmental Area Connectivity Revealed by ViralGenetic Dissection of Input-Output Relations. Cell reports 26, 159–167 e156. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Morales M, and Margolis EB (2017). Ventral tegmental area: cellular heterogeneity, connectivity and behaviour. Nature reviews. Neuroscience 18, 73–85. [DOI] [PubMed] [Google Scholar]
- 9.Taylor SR, Badurek S, Dileone RJ, Nashmi R, Minichiello L, and Picciotto MR (2014). GABAergic and glutamatergic efferents of the mouse ventral tegmental area. The Journal of comparative neurology 522, 3308–3334. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Zhou Z, Liu X, Chen S, Zhang Z, Liu Y, Montardy Q, Tang Y, Wei P, Liu N, Li L, et al. (2019). A VTA GABAergic Neural Circuit Mediates Visually Evoked Innate Defensive Responses. Neuron. [DOI] [PubMed] [Google Scholar]
- 11.Puryear CB, Kim MJ, and Mizumori SJ (2010). Conjunctive encoding of movement and reward by ventral tegmental area neurons in the freely navigating rodent. Behavioral neuroscience 124, 234. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12.Wang DV, and Tsien JZ (2011). Conjunctive processing of locomotor signals by the ventral tegmental area neuronal population. PloS one 6, e16528. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Fan D, Rich D, Holtzman T, Ruther P, Dalley JW, Lopez A, Rossi MA, Barter JW, Salas-Meza D, Herwik S, et al. (2011). A wireless multi-channel recording system for freely behaving mice and rats. PLoS One 6, e22033. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Bartholomew RA, Li H, Gaidis EJ, Stackmann M, Shoemaker CT, Rossi MA, and Yin HH (2016). Striatonigral control of movement velocity in mice. The European journal of neuroscience 43, 1097–1110. [DOI] [PubMed] [Google Scholar]
- 15.Kim N, Li HE, Hughes RN, Watson GDR, Gallegos D, West AE, Kim IH, and Yin HH (2019). A striatal interneuron circuit for continuous target pursuit. Nature communications 10, 2715. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Rossi MA, Fan D, Barter JW, and Yin HH (2013). Bidirectional Modulation of Substantia Nigra Activity by Motivational State. PloS one 8, e71598. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Cohen JY, Haesler S, Vong L, Lowell BB, and Uchida N (2012). Neuron-type-specific signals for reward and punishment in the ventral tegmental area. Nature 482, 85–88. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Margolis EB, Lock H, Hjelmstad GO, and Fields HL (2006). The ventral tegmental area revisited: is there an electrophysiological marker for dopaminergic neurons? J Physiol 577, 907–924. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Cai DJ, Aharoni D, Shuman T, Shobe J, Biane J, Song W, Wei B, Veshkini M, La-Vu M, Lou J, et al. (2016). A shared neural ensemble links distinct contextual memories encoded close in time. Nature 534, 115–118. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Dana H, Sun Y, Mohar B, Hulse B, Hasseman JP, Tsegaye G, Tsang A, Wong A, Patel R, Macklin JJ, et al. (2018). High-performance GFP-based calcium indicators for imaging activity in neuronal populations and microcompartments. bioRxiv, 434589. [DOI] [PubMed] [Google Scholar]
- 21.Flusberg BA, Nimmerjahn A, Cocker ED, Mukamel EA, Barretto RP, Ko TH, Burns LD, Jung JC, and Schnitzer MJ (2008). High-speed, miniaturized fluorescence microscopy in freely moving mice. Nature methods 5, 935–938. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Yin HH (2017). The Basal Ganglia in Action. Neuroscientist 23. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.Yin HH (2014). How basal ganglia outputs generate behavior. Advances in neuroscience 2014, 768313. [Google Scholar]
- 24.Yu X, Li W, Ma Y, Tossell K, Harris JJ, Harding EC, Ba W, Miracca G, Wang D, Li L, et al. (2019). GABA and glutamate neurons in the VTA regulate sleep and wakefulness. Nature neuroscience 22, 106–119. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.Schultz W (1998). Predictive reward signal of dopamine neurons. Journal of neurophysiology 80, 1–27. [DOI] [PubMed] [Google Scholar]
- 26.Fan D, Rossi MA, and Yin HH (2012). Mechanisms of action selection and timing in substantia nigra neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience 32, 5534–5548. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Barter JW, Castro S, Sukharnikova T, Rossi MA, and Yin HH (2014). The role of the substantia nigra in posture control. European Journal of Neuroscience 39 (9), 1465–1473. [DOI] [PubMed] [Google Scholar]
- 28.Barter JW, Li S, Sukharnikova T, Rossi MA, Bartholomew RA, and Yin HH (2015). Basal ganglia outputs map instantaneous position coordinates during behavior. Journal of Neuroscience 35, 2703–2716. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29.Barter J, Li S, Lu D, Rossi M, Bartholomew R, Shoemaker CT, Salas-Meza D, Gaidis E, and Yin HH (2015). Beyond reward prediction errors: the role of dopamine in movement kinematics. Frontiers in Integrative Neuroscience 9, 39. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Owen SF, Liu MH, and Kreitzer AC (2019). Thermal constraints on in vivo optogenetic manipulations. Nature neuroscience 22, 1061–1065. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31.Angelaki DE, and Yakusheva TA (2009). How vestibular neurons solve the tilt/translation ambiguity. Comparison of brainstem, cerebellum, and thalamus. Annals of the New York Academy of Sciences 1164, 19–28. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32.Taube JS (2007). The head direction signal: origins and sensory-motor integration. Annual review of neuroscience 30, 181–207. [DOI] [PubMed] [Google Scholar]
- 33.Bassett JP, and Taube JS (2001). Neural correlates for angular head velocity in the rat dorsal tegmental nucleus. The Journal of neuroscience : the official journal of the Society for Neuroscience 21, 5740–5751. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34.Faget L, Osakada F, Duan J, Ressler R, Johnson AB, Proudfoot JA, Yoo JH, Callaway EM, and Hnasko TS (2016). Afferent Inputs to Neurotransmitter-Defined Cell Types in the Ventral Tegmental Area. Cell reports 15, 2796–2808. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.Lopes G, Bonacchi N, Frazao J, Neto JP, Atallah BV, Soares S, Moreira L, Matias S, Itskov PM, Correia PA, et al. (2015). Bonsai: an event-based framework for processing and controlling data streams. Front Neuroinform 9, 7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Pnevmatikakis EA, Soudry D, Gao Y, Machado TA, Merel J, Pfau D, Reardon T, Mu Y, Lacefield C, Yang W, et al. (2016). Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data. Neuron 89, 285–299. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Glaser JI, Chowdhury RH, Perich MG, Miller LE, and Kording KP (2017). Machine learning for neural decoding. arXiv preprint arXiv:1708.00909. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
Raw data from the current study were not deposited into a public repository due to the large size of the data sets, but are available from the corresponding author upon request.