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PLOS ONE logoLink to PLOS ONE
. 2020 Feb 27;15(2):e0229689. doi: 10.1371/journal.pone.0229689

Population dynamics and biological feasibility of sustainable harvesting as a conservation strategy for tropical and temperate freshwater turtles

Angga Rachmansah 1,¤, Darren Norris 2,3,*, James P Gibbs 1
Editor: Masami Fujiwara4
PMCID: PMC7046234  PMID: 32106260

Abstract

Background

Conservation strategies are urgently needed for tropical turtles that are increasingly threatened by unsustainable exploitation. Studies conducted exclusively in temperate zones have revealed that typical turtle life history traits (including delayed sexual maturity and high adult survivorship) make sustainable harvest programs an unviable strategy for turtle conservation. However, most turtles are tropical in distribution and the tropics have higher, more constant and more extended ambient temperature regimes that, in general, are more favorable for population growth.

Methods

To estimate the capacity of temperate and tropical turtles to sustain harvest, we synthesized life-history traits from 165 predominantly freshwater turtle species in 12 families (Carettochelydae, Chelidae, Chelydridae, Dermatemydidae, Emydidae, Geoemydidae, Kinosternidae, Pelomedusidae, Platysternidae, Podocnemididae, Staurotypidae and Trionychidae). The influence of climate variables and latitude on turtle life-history traits (clutch size, clutch frequency, age at sexual maturity, and annual adult survival) were examined using Generalized Additive Models. The biological feasibility of sustainable harvest in temperate and tropical species was evaluated using a sensitivity analysis of population growth rates obtained from stage-structured matrix population models.

Results

Turtles at low latitudes (tropical zones) exhibit smaller clutch sizes, higher clutch frequency, and earlier age at sexual maturity than those at high latitudes (temperate zones). Adult survival increased weakly with latitude and declined significantly with increasing bioclimatic temperature (mean temperature of warmest quarter). A modeling synthesis of these data indicates that the interplay of life-history traits does not create higher harvest opportunity in adults of tropical species. Yet, we found potential for sustainable exploitation of eggs in tropical species.

Conclusions

Sustainable harvest as a conservation strategy for tropical turtles appears to be as biologically problematic as in temperature zones and likely only possible if the focus is on limited harvest of eggs. Further studies are urgently needed to understand how the predicted population surplus in early life stages can be most effectively incorporated into conservation programs for tropical turtles.

Introduction

Vertebrate animals are important for human welfare and wellbeing [13], particularly as food, medicine, and cultural uses by rural and aboriginal communities [36]. Freshwater turtles are a good example—they are frequently targeted for both subsistence and commercial harvest, primarily by local communities that live in the vicinity of river and wetlands [79]. High biomass [10, 11], ease of capture, and extended survival with minimal care in captivity make freshwater turtles a focus for harvest [79].

Unsustainable harvesting is recognized as one of the major factors driving global freshwater turtle decline [1215]. Over 40% of turtle species are endangered as a result of overexploitation [13, 15, 16]. Although turtles are harvested for various purposes (e.g. pets, medicine, and curios), the most heavy use of turtles is for food [7, 16, 17]. Large adult turtles [1821] and eggs [18] are usually the primary target of harvesting, because these life stages are the most valuable for food [7, 8, 16] and the easiest life stages to encounter. The greatest harvesting pressure occurs in tropical areas [7, 8], where the most freshwater turtles occur [22, 23]. For many local people in these areas, turtle meat and eggs are not only important as sources of protein and lipid, but also support them economically [7, 16, 24]. Yet, unsustainable exploitation in tropical areas can also lead to regional population collapse and as a consequence create pressures in other regions of the world [25].

Sustainable harvesting programs have been widely promoted as a strategy for wildlife conservation [26, 27]. Moreover, active involvement of local people in these sustainable harvest programs generally creates better outcomes for conserving wildlife [27, 28]. However, this conservation strategy is assumed not viable for turtle conservation [7, 29]. A corpus of research on the topic has revealed that turtles are poor candidates for any sustainable use program [3032]. In general, turtles exhibit delayed sexual maturity, high adult survivorship, low fecundity, and long life span [3035]. This combination of life-history traits limits their ability to compensate for additive adult mortality from harvesting [9, 29, 33, 35, 36].

It is notable, however, that virtually all research on sustainability of harvest as a conservation strategy for turtles has been conducted in temperate zones. Variation in life-history traits occurs within and between turtle species that inhabit different environments [33, 3741]. Variation in clutch size [37, 42], clutch frequency [34], growth rate, and age at sexual maturity [37] in relation to latitude have been observed in turtles. The interplay of these different life-history traits has been suggested to create more opportunity to harvest turtles sustainably, at least in one tropical freshwater species in Northern Australia [19, 43]. Earlier age at sexual maturity, higher fecundity, and faster growth rates in this tropical freshwater turtle compared to other turtles [43] may allow their populations to be harvested at 20% annual harvest rate [19]. This elevated harvest rate challenges the generality of the widely held assumption that sustainable harvest programs are biological infeasible for freshwater turtles. Indeed, considering that sustainable harvest research is based almost entirely on temperate zone species, the biological feasibility of sustainable harvest should be reassessed given the challenges of conserving turtles in rapidly developing tropical regions where most turtle diversity occurs [9, 13].

In this study, we investigated global patterns of life-history traits (clutch size, clutch frequency, age at sexual maturity, and adult survival) in freshwater turtles using published data and contrasted them between freshwater turtle species from temperate and tropical regions. We then developed a population projection model to estimate the capacity of freshwater turtle species from temperate and tropical regions to sustain harvest. The primary goal of this study was to evaluate the hypothesis that freshwater turtle species from tropical and temperate regions have the same, widely speculated incapacity to absorb additive mortality caused by population harvest [30, 31, 36].

Materials and methods

Data collection

Life-history traits of freshwater turtle species were quantified along with locality of each report (latitude and longitude) from the published literature. We used keywords “life history”, “clutch size”, “clutch frequency”, “reproduction”, “age at sexual maturity”, “survival”, “growth”, “natural history”, and “turtle” to explore the published literature as indexed in the databases of EBSCO, Google Scholar, and Web of Science. Marine turtles (Cheloniidae and Dermochelyidae) and tortoises (Testudinidae) were excluded from the results. Although some families (e.g. Emydidae) include a few predominantly terrestrial turtle species (e.g. Terrapene carolina), as our analysis is general across taxonomic families, hereafter we refer to all as “freshwater turtles” to distinguish them from marine turtles or tortoises. The mean, median, or range (midpoint calculated and used in < 1% of cases) values of reproductive parameters (clutch size, clutch frequency), demographic parameters (age at sexual maturity, annual adult survival rate), and morphological characters (carapace length) were extracted from each report acquired. Annual adult survival values were also checked and confirmed against those available for 15 freshwater turtle species in an online demographic database COMADRE [44] (version 3.0.0, accessed 2 September 2019 http://www.comadre-db.org/Data/Comadre).

When the exact coordinates of locality were not described, we estimated location from the nearest locality described in a given report. The coordinates of each turtle life-history report were also combined with Global Biodiversity Information Facility (GBIF) records (accessed via GBIF.org on 2019-01-13) and published data [39] to establish species distribution across four latitudinal classes: Temperate (species with latitudinal median and range within temperate zone), Temperate-tropical (“Temp-trop”, species with latitudinal median within temperate and range overlapping tropical zone/s), Tropical-temperate (“Trop-temp”, species with latitudinal median within tropical and range overlapping temperate zone/s), Tropical (species with latitudinal median and range within tropical zone). The tropics of Capricorn and Cancer (latitude -23.5°, 23.5°, respectively) were used to define geographic limits of temperate and tropical zones.

Two bioclimatic variables relevant to freshwater turtle biology, Mean Temperature of Warmest Quarter (bio10, °C) and Precipitation of Driest Quarter (bio17, mm) were obtained from WorldClim—Global Climate Data (5-arc ≈ 10 km resolution, www.worldclim.org, [45]) and matched to the coordinates of each turtle life-history report using functions available in the R [46] package raster [47]. These bioclimatic variables were selected as proxies to represent the metabolic, physiological and behavioral differences that freshwater turtles have developed to survive in regions that are not ideal for these temperature and water dependent species [10, 22, 33, 34, 3942, 48]. Both bioclimatic variables were only weakly correlated with latitude (Spearmans correlation 0.40 and 0.04 for bio10 and bio17 respectively) and were therefore included to represent temperature and rainfall patterns distinct to those most strongly associated with latitudinal gradients.

Statistical analysis

We used Generalized Additive Models (GAMs, [49, 50]) to examine the influence of climate variables and latitude on freshwater turtle life-history traits (clutch size, clutch frequency, age at sexual maturity, and annual adult survival). We treated each freshwater turtle species as a replicate in this analysis (obtaining median life-history values within species for species with n > 1 reports) to avoid the pitfalls of pseudoreplication associated with treating individual reports as replicates. Because comparative life-history studies are not independent from phylogenetic relationships among turtles, which can lead to phylogenetic bias on inference and trait value estimation, we treated taxonomic family as a random effect (penalized smoothed regression term) [51, 52] based on the Turtles of the World Checklist (8th edition, [53]). In addition, we used carapace length (ln-transformed) as a parametric term to control for its well-established influence on life-history traits [34, 37, 39, 42].

A total of four models were developed for each life-history trait: latitude as a continuous variable included as a parametric term, latitude as a categorical variable with four classes (Temperate, Temp-Trop, Trop-Temp and Tropical), and two bioclimatic variables (Mean Temperature of Warmest Quarter and Precipitation of Driest Quarter) included as parametric terms. All four model variables were only weakly correlated with carapace length (all pairwise Pearson correlations < 0.25, S1 File) so could be reliably included in the GAM analysis [50]. All life-history trait estimates were ln-transformed, except for adult survival (arcsine transformed). The mgcv package [49] was used to perform the GAM analysis in R (www.r-project.org, [46]). Akaike Information Criterion corrected for small sample sizes (AICc) that measures fit versus complexity of a model was used to select “best” models based on lowest AICc [54, 55].

Modelling synthesis

To evaluate whether freshwater turtles from tropical and temperate zones have comparable capacities to absorb additive mortality caused by population harvest, we implemented a density-independent, stage structured “Lefkovitch” matrix population model [35, 56, 57]. We chose to retain this relatively simple model, without including nonlinear effects (e.g. density-dependence, environmental stochasticity) as although some turtles are very well-studied, the majority of species typically have many demographic and life-history parameters that are unknown or highly uncertain. The sparsity of original data available for both turtle demography and human impacts better support a stage-based approach [58]. We therefore consider a stage-structured parameterization as most appropriate for our objective to compare population dynamics of tropical and temperate turtles. The stage-structured model is also commonly used in turtle population dynamics modelling, as age in most turtle species (typically long-lived, iteroparous and mobile) is often difficult to determine [19, 35]. The model consisted of egg, juvenile, and adult stages (Fig 1) projected with a stable-stage distribution (with an initial population of 1000, allocated in proportions of 0.544, 0.401, 0.055 to egg, juvenile and adult stages respectively).

Fig 1. Conceptual diagram of population dynamics of freshwater turtles used for construction of a stage structure matrix model to estimate capacity for sustainable harvest in freshwater turtles.

Fig 1

The discrete stage based lifecycle (Fig 1) can be presented as a population projection matrix “A” as follows:

A=[00FG1P100G2P2]

where P is the annual probability of surviving and remaining in the same stage, G is the annual probability of surviving and growing into next stage, and F is the annual fecundity. These parameters were estimated using the following equations [58]:

P=(1-pidi-1)(1-pidi)pi (1)
G=pidi(1-pi)1-pidi (2)

where pi is the annual survival probability of i stage and di is the duration of i stage. These equations assume asymptotic growth rate equals 1, and have been referred to as “stationary age-within-stage structure” models [59]. Annual fecundity (F) was estimated by multiplying clutch size with clutch frequency. The model was based on female fraction only; thus half of all eggs produced was assumed to be female [30, 31]. The stable distributions of individuals amongst stage classes and intrinsic rate of population growth (r) were determined with functions available in the R [46] packages “popdemo” [60] and “popbio” [61].

Median values of clutch size, clutch frequency, age at sexual maturity and adult survival derived from the GAM predictions was used as input for this stage-structured model. Due to the sparsity of records for some traits (e.g. adult survival) predictions were aggregated across two latitudinal classes (temperate and tropical) to compare the intrinsic rate of population growth (r) between stages and latitude. Predictions for each trait were obtained from a final GAM model that included all variables in a 95% confidence subset of models [54]. This confidence set was obtained by summing the Akaike weights of the set of all candidate models ordered by Akaike weight from largest to smallest until a sum of ≥0.95 was obtained ([54] pp. 169, 176–177). We estimated the annual survival probability of juvenile stage as 13% less than the annual survival probability of adult stage [62]. Due to lack of available nest / hatchling survival data the annual survival probability of egg stage for all turtle species was set at 0.2 [30, 31, 33].

Elasticity analysis was used to identify stages that should be the focus of management effort and that contribute most to fitness [35, 63, 64]. Elasticities (proportional change) differ from sensitivities (absolute change) given a change in the matrix parameter [35, 64]. By calculating elasticities it is therefore possible to compare i) the relative effects of proportional change in one or more life-history stages and ii) proportional changes in values (e.g. fecundity and survival) which are on different scales [35, 56]. Elasticities were compared from the stage structured matrix population models parameterized using both the median observed and median predicted values.

To simulate the impact of harvest on populations of our generalized tropical and temperate freshwater turtles, we performed a sensitivity analysis by varying each demographic parameter systematically while holding all other parameters constant [30, 31]. In addition, we performed Jackknife randomizations [65] drawing deviates (n = 500 iterations) for each model parameter from the distribution (95% value range) of species level values observed in the literature (S1 Table) for these variables to estimate confidence intervals around the estimated intrinsic rates of growth of temperate and tropical species in sensitivity analysis.

Results

A total of 461 reports of life-history traits were obtained from 165 species (63% of living freshwater turtle species) among 12 taxonomic families (Fig 2, S1 Table). The data once aggregated (Table 1) represent: 84 species from 7 families in the temperate zone (Temperate and Temperate-Tropical classes) and 81 species from 12 families in the tropical zone (Tropical-Temperate and Tropical classes). Sixty percent of these studies were from temperate areas, with most of these (73%) from North America (Fig 2). Forty percent of these data were from tropical areas, with most of these (36%) from Asia. Only 12 of these life-history trait reports (including 5 tropical and 3 temperate species) were from captive breeding situations while the remainder were from wild populations.

Fig 2. Distribution of freshwater turtle studies.

Fig 2

Geographic distribution of data on freshwater turtle life-history traits obtained from the literature (S1 Table) to estimate capacity for sustainable harvest in freshwater turtles. Color of study locations represent the distribution of the study species across four latitudinal classes: Temperate (species with latitudinal median and range within temperate zone), “Temp-Trop” (species with latitudinal median within temperate and range overlapping tropical zone/s), “Trop-Temp” (species with latitudinal median within tropical and range overlapping temperate zone/s), Tropical (species with latitudinal median and range within tropical zone). Dashed horizontal lines show Tropic of Cancer and Tropic of Capricorn (latitude -23.5°, 23.5°, respectively). The background map was obtained from the 1:110m Natural Earth country and geographic lines maps (http://www.naturalearthdata.com).

Table 1. Demographic parameters in freshwater turtles.

Demographic parameters used in population modelling to estimate capacity for sustainable harvest in freshwater turtles. Estimates are median values derived from the scientific literature (S1 Table) and summarized based on the species distributions across four latitudinal classes. Values in parentheses are the number of species with data available and used to calculate medians.

Distributiona Families Species Latb Carapace Length Clutch Size Clutch Frequency Age at sexual maturity Fecundity
Temperate 6 41 34.0 181.0 (41) 8.4 (41) 2.0 (35) 8.7 (34) 7.8 (35)
Temp-Trop 6 43 29.1 221.7 (43) 11.2 (43) 1.7 (28) 8.3 (18) 6.6 (28)
Trop-Temp 10 37 18.3 197.3 (37) 6.1 (37) 2.5 (20) 6.5 (12) 6.0 (20)
Tropical 10 44 9.6 231.5 (44) 7.3 (44) 2.0 (19) 9.0 (11) 3.5 (19)
Overall 12 165 23.1 208.0 (165) 8.0 (165) 2.0 (102) 8.3 (75) 6.3 (102)

a Distribution of freshwater turtles in four latitudinal classes: Temperate (species latitudinal median and range within temperate zone), Temp-trop (species latitudinal median within temperate and range overlapping tropical zone/s), Trop-temp (species latitudinal median within tropical and range overlapping temperate zone/s), Tropical (species latitudinal median and range within tropical zone). This classification is unique for each species i.e. a species is only included in one class.

b Median latitude from species locations within each distribution class.

Latitude as continuous variable significantly influenced all life-history traits, except adult survival (Fig 3, Table 2, Table 3). Indeed, latitude was the most informative variable for clutch size, clutch frequency and age at sexual maturity (Table 3). Natural logarithm of clutch size (β = 0.13; P < 0.001) and age at sexual maturity (β = 0.06; P < 0.01) were positively related to latitude, whereas natural logarithm of clutch frequency (β = -0.09; P < 0.05) exhibited a negative relationship with latitude (Fig 3, Table 2). When latitude was treated as categorical variable, only the natural logarithm of clutch size was significantly related to latitudinal zones, such that Tropical (β = -0.21; P < 0.001) and Tropical-Temperate (β = -0.13; P < 0.05) species had reduced clutch size relative to temperate species (Table 2).

Fig 3. Relationships between latitude and (A) clutch size, (B) clutch frequency, (C) age at sexual maturity, and (D) adult survival rate of freshwater turtles.

Fig 3

Points are the median species values obtained from the literature (S1 Table), colored representing ln carapace length values. Solid black line is the GAM prediction. Grey shaded polygons show 95% confidence bands around the prediction.

Table 2. Influence of climate variables and latitude on freshwater turtle life-history traits.

Generalized Additive Models were used to predict responses of four freshwater turtle life-history traits: clutch size, clutch frequency, age at sexual maturity and adult survival.

Model ln clutch size (n = 165) ln clutch frequency (n = 102) ln age at sexual maturity (n = 75) arcsine adult survival (n = 37)
Continuous latitude Est. a SE p Est. a SE p Est. a SE p Est. a SE p
Intercept 0.78 0.05 *** 0.12 0.05 * 0.75 0.02 *** 0.12 0.03 ***
Log carapace length 0.29 0.02 *** 0.01 0.03 0.09 0.02 *** 0.01 0.03
Latitude 0.13 0.00 *** -0.09 0.04 * 0.06 0.02 ** 0.04 0.03
Smooth Edf/ref F p Edf/ref F p Edf/ref F p Edf/ref F p
Family 8.1/11 6.48 *** 5.0 / 11 1.2 * 0.0 / 10 0.0 0.0 / 7 0.0
R2 ajust / Dev. Exp b 0.78 / 77.6% 0.12 / 17.9% 0.19 / 20.2 0.01 / 6.7
Categorical latitude Est. a SE p Est. a SE p Est. a SE p Est. a SE p
Intercept 0.85 0.06 *** 0.12 0.06 . 0.76 0.05 *** 0.10 0.06
Log carapace length 0.29 0.02 *** 0.01 0.03 0.06 0.03 * -0.01 0.04
Latitude temp-trop 0.04 0.05 -0.06 0.08 0.02 0.05 0.08 0.06
trop-temp -0.13 0.05 * 0.06 0.09 -0.11 0.07 0.07 0.09
tropical -0.21 0.05 *** 0.04 0.09 -0.02 0.08 -0.05 0.12
Smooth Edf/ref F p Edf/ref F p Edf/ref F p Edf/ref F p
Family 7.9/11 6.27 *** 2.7 / 11 0.4 4.7 / 10 0.9 . 2.5 / 7 0.6
R2 ajust / Dev. Exp b 0.76 / 75.8% 0.03 / 9.3% 0.24 / 32.2% 0.07 / 23.8%
Bioclimate - temp Est. a SE p Est. a SE p Est. a SE p Est. a SE p
Intercept 0.76 0.05 *** 0.12 0.04 ** 0.72 0.04 *** 0.11 0.03 **
Log carapace length 0.27 0.02 *** 0.01 0.03 0.07 0.03 ** 0.02 0.03
Temp. warm quarter (bio10) -0.01 0.02 0.03 0.03 -0.06 0.02 ** -0.08 0.03 *
Smooth Edf/ref F p Edf/ref F p Edf/ref F p Edf/ref F p
Family 7.0 / 11 4.39 *** 3.4 / 11 0.6 . 5.4 / 10 1.2 * 0.0 / 7 0.0
R2 ajust / Dev. Exp b 0.72 / 69.8% 0.05 / 9.9% 0.31 / 37.7% 0.12 / 16.7%
Bioclimate - rain Est. a SE p Est. a SE p Est. a SE p Est. a SE p
Intercept 0.76 0.05 *** 0.12 0.04 ** 0.73 0.05 *** 0.15 0.03 ***
Log carapace length 0.27 0.02 *** 0.01 0.03 0.06 0.03 * -0.01 0.03
Rain dry quarter (bio17) -0.03 0.02 . 0.02 0.03 0.00 0.02 0.02 0.04
Smooth Edf/ref F p Edf/ref F p Edf/ref F p Edf/ref F p
Family 7.4/11 5.71 *** 2.5 / 11 0.3 5.7 / 10 1.5 * 0.0 / 7 0.0
R2 ajust / Dev. Exp b 0.72 / 70.5% 0.02 / 7.0% 0.24 / 31.6% -0.04 / 1.4%

Each model contained Family as a random effect (smooth GAM term specified with “re” basis) and body size (ln transformed carapace length) as a parametric term; Asterisks indicate significant level of estimated parameters (*** P < 0.001; ** P < 0.01; * P < 0.05; ‘.’ P < 0.1).

a Standardized regression coefficient (obtained by dividing the centered response values by their standard deviations) and associated standard error (SE).

b Model adjusted r-squared and deviance explained (%)

Table 3. Freshwater turtle life-history model comparisons.

Comparisons of the Generalized Additive Models created for each life-history trait to estimate capacity for sustainable harvest in freshwater turtles. Models for each trait ordered by decreasing AICc (Akaike information criterion corrected for small sample sizes) values.

Life-history trait Modela Dev. Exp Loglik BIC AICc Δ AICc Wi AICcb
Clutch size
Continuous latitude 77.6 -69.35 207.05 168.09 0.00 1.00
Categorical latitude 75.8 -80.04 237.57 193.80 25.71 0.00
Bioclimate - rain 69.8 -95.48 256.12 218.85 50.77 0.00
Bioclimate - temp 70.5 -98.96 261.27 224.98 56.90 0.00
Clutch frequency
Continuous latitude 17.9 -14.42 81.83 54.94 0.00 0.93
Bioclimate - temp 9.9 -19.25 85.31 61.22 6.28 0.04
Bioclimate - rain 7.0 -21.01 83.69 62.00 9.79 0.03
Categorical latitude 9.3 -19.61 91.34 64.84 12.62 0.01
Age at sexual maturity
Continuous latitude 20.2 -28.82 79.24 68.52 0.00 0.57
Bioclimate - temp 37.7 -19.46 92.49 69.13 0.62 0.42
Bioclimate - rain 31.6 -22.86 99.50 76.08 7.56 0.01
Categorical latitude 32.2 -22.62 104.54 79.42 10.91 0.00
Adult survival
Bioclimate - temp 16.7 14.16 -10.39 -16.31 0.00 0.85
Continuous latitude 6.7 12.09 -6.27 -12.19 4.12 0.11
Bioclimate - rain 1.4 11.09 -4.26 -10.18 6.13 0.04
Categorical latitude 23.8 15.77 7.28 0.73 17.04 0.00

a Models used to predict natural history traits. Each model contained Family as a random effect (smooth term with “re” basis) and body size (log transformed carapace length) as a parametric (not smooth) effect. Continuous latitude included median latitude from all records (S1 Table). Categorical latitude included four latitudinal classes: Temperate (species with latitudinal median and range within temperate zone), “Temp-Trop” (species with latitudinal median within temperate and range overlapping tropical zone/s), “Trop-Temp” (species with latitudinal median within tropical and range overlapping temperate zone/s), Tropical (species with latitudinal median and range within tropical zone). Bioclimate—temp included Mean Temperature of Warmest Quarter (WorldClim: bio10). Bioclimate—rain included Precipitation of Driest Quarter (WorldClim: bio17). Coefficients for individual variables in all models are presented in Table 2.

b Akaike weights (Wi) from largest to smallest. Predictions for each trait were obtained using variables from the 95% confidence subset of models, obtained by first ordering all models in the set by decreasing Akaike weight (Wi), and then sequentially summing the model Wi's in rank order.

Of the two bioclimatic variables assessed, only bioclimatic temperature (Mean Temperature of Warmest Quarter) was a contributor to life-history variation (Table 2) and was also the most informative variable for adult survival (Table 3). The bioclimatic temperature models were included in the 95% confidence set for all life-history traits, except clutch size (Table 3). Natural logarithm of age at sexual maturity (β = -0.06; P < 0.01) and arcsine adult survival (β = -0.08; P < 0.05) were both negatively related to Mean Temperature of Warmest Quarter (Fig 4).

Fig 4. Relationships between bioclimatic temperature (Mean Temperature of Warmest Quarter) and (A) clutch size, (B) clutch frequency, (C) age at sexual maturity, and (D) adult survival rate of freshwater turtles.

Fig 4

Points are the median species values obtained from the literature (S1 Table), colored representing ln carapace length values. Solid black line is the GAM prediction. Grey shaded polygons show 95% confidence bands around the prediction.

Elasticity analysis revealed that the survival of adult females was by far (on average at least 2 times) more important than juvenile stages. In contrast, egg survival had the weakest effect on population multiplication rate. The trends in elasticities between stages were similar for both temperate and tropical species. Yet, on average both egg and juvenile survival tended to be relatively more important in tropical compared with temperate species (Table 4). The sensitivity analysis performed to examine the impact of harvest on freshwater turtle populations revealed that adult and juvenile survival rates had dramatically more impact on intrinsic rate of population growth than egg survival rate and fecundity (Fig 5). Tropical freshwater turtle species exhibited a moderately higher intrinsic rate of growth than temperate freshwater turtle species (Fig 5). Although, fecundity tended to be less in tropical species (Table 1, Table 5), comparing the minimum values necessary to result in positive population growth with GAM predictions showed that fecundity could be reduced by 28% in tropical compared with only 12% in temperate species (Table 5). Survival rates were estimated to be reducible by 35% in eggs, 24% in juveniles, and 5% in adults for tropical species, and 15%, 16%, and 7%, respectively for temperate species, without causing negative population growth (Table 5). However, overlap in estimations of population growth in relation to survival rates was very broad between tropical and temperate turtle species (Fig 5, Table 5).

Table 4. Elasticity values.

Elasticity values calculated from stage structured matrix population models for demographic parameters in temperate (Temp.) and tropical (Trop.) freshwater turtles. Observed elasticities were derived from median values from the scientific literature (S1 Table) and predicted values are from the 95% confidence set of GAM models (Table 3).

Parameter Observed Predicted
Temp. Trop. Temp. Trop.
Egg survival 0.090 0.110 0.076 0.082
Juvenile Pia 0.183 0.252 0.208 0.216
Juvenile Gib 0.090 0.110 0.076 0.082
Adult survival 0.546 0.419 0.564 0.537
Annual fecundityc 0.090 0.110 0.076 0.082

a Juvenile Pi = probability of a juvenile surviving and remaining in the juvenile stage.

b Juvenile Gi = probability of a juvenile surviving and “graduating” to the adult stage.

c Clutch size X number of clutches X breeding frequency

Fig 5. Relationships between intrinsic rate of growth (r) and survival rates of (A) egg, (B) juvenile, and (C) adult, and (D) fecundity in freshwater turtles of tropical and temperate zones.

Fig 5

Population growth curves (orange and blue lines for temperate and tropical species respectively) were obtained by varying each demographic parameter with all other population parameters held constant. Confidence and prediction intervals were obtained via jackknife randomizations. White shaded polygons show 95% confidence bands. Colored polygons show 95% prediction bands (i.e. include 95% of randomized r values).

Table 5. Demographic parameters used in population modelling to estimate capacity for sustainable harvest in freshwater turtles.

Observed are median values derived from the scientific literature (S1 Table) and predicted values are from the 95% confidence set of GAM models (Table 3). “r min” are the minimum values necessary to obtain positive intrinsic rate of growth (r) as determined via sensitivity analysis (Fig 5).

Parameter Observed Predicted r min
Temp. Trop. Temp. Trop. Temp. Trop.
Annual egg survival rate 0.200 a 0.200 a 0.200 a 0.200 a 0.170 0.130
Annual juvenile survival rate 0.766b 0.767b 0.746b 0.694b 0.630 0.530
Annual adult survival rate 0.880 0.882 0.857 0.798 0.800 0.760
Clutch size 8.8 7.0 7.3 5.2
Clutch frequency 2.0 2.3 2.0 2.3
Age at sexual maturity 8.3 7.8 8.6 7.3
Fecundity 7.3 6.0 7.3 6.0 6.4 4.3

a Values derived from previous syntheses [33].

b Estimated as 13% less than the annual adult survival rates [62].

Discussion

The capacity of any species to cope with additive mortality is determined by the interplay of its life-history traits [63, 66, 67]. Turtles are often declared to share integrated life-history traits [68] that make compensation for additive mortality associated with harvest infeasible [29]. Life-history traits of many organisms are related to variation in environment [69, 70], climate [71] and their ecological interactions [63, 66, 67, 72, 73] and this study revealed that turtle life-history is strongly related to latitude and ambient temperature. Yet although these trends might suggest an increase in capacity of tropical freshwater turtles to absorb additional mortality due to anthropogenic sources than in temperate zone species, once integrated in a synthetic population model tropical species appear to be as unable to absorb additive mortality as are temperate zone species.

The positive relationship we observed between clutch size and latitude is consistent with earlier studies [37, 42]. Turtles that inhabit higher (temperate) latitudes, have larger clutch size than turtles that inhabit low (tropical) latitudes. Similar patterns have been observed in mammals [71] and birds [72, 74]. Tokolyi, Schmidt (71) and McNamara, Barta (72) suggest this pattern is related to climate variability. Iverson, Balgooyen (42) concluded that higher juvenile competition due to shorter time period for development along with higher egg mortality associated with winter and climate uncertainty that creates temporary periods of low competition may make it more advantageous for temperate turtle species to produce more offspring (“more eggs in one basket” [34]) as a “bet hedging” strategy to exploit temporary resources. In addition, temperate turtle species typically have small egg size to speed development as an adaptation to short incubation times in temperate zone [17, 42]. As such, our findings support the suggestion that temperature zone turtles may have evolved to produce smaller egg size with larger clutch size than tropical species [34].

Larger clutch size in temperate turtle species may also act as a mechanism to compensate for low nesting frequency [34, 42]. We found that clutch frequency was negatively related to latitude. The general model of the interaction of environmental factors and reproductive output in turtles [34] suggests that high latitudes yield short reproductive seasons for turtles, resulting in lower clutch frequency. In addition, timing of nesting in turtles is correlated with temperature [37, 75]. Because tropical zones have a more stable warmer temperature all year long, more opportunities are available for turtles to lay eggs than in the temperate zone. Additionally, clutch mass (number of eggs x egg size) and reproductive output (often estimated as relative clutch mass) can also vary with latitude [34, 42]. Further studies are necessary to examine how reproductive output correlates to differences in population growth rates, especially as egg size and reproductive output have been shown to be important predictors of age at sexual maturity [33, 34].

The relationship between age at sexual maturity and latitude observed in this study is also in agreement with the earlier studies [7678]. Turtles that inhabit high latitudes reach maturity at a later age than those inhabit low latitudes. This result is likely due to more stable and more productive climate conditions at low latitudes. As growth rate in turtles depends on temperature and food availability [79, 80], thus stable warm temperature and continuous food availability in low latitudes will generate faster growth rate to reach size at sexual maturity [34]. This conclusion is also supported by the inverse relationship between Mean Temperature of Warmest Quarter and age at sexual maturity. Although it has been suggested that turtles tend to have larger body size at higher latitudes [81] a recent review (compilation of 245 species) failed to uncover clear latitudinal trends in turtle body size [39]. These differences between studies (for example [81] evaluated variation within species from a sample of 23 species of mainly northern hemisphere and temperate turtles) seem to support the hypothesis that body size latitude relationships (e.g. Bergmann’s rule) maybe stronger for temperate turtle species. Large body size is thought to provide evolutionary advantages for temperate turtle species to cope with unfavorable environments e.g. via a relative increase in fasting endurance [37, 80]. As a result, temperate turtle species require longer time to reach size at sexual maturity, but increased size may provide for increased adult survivorship [33].

Adult survival and latitude were not strongly related. This was perhaps because all turtles share in common a unique morphological feature: a rigid shell [29, 82, 83]. Turtle shells not only provide physical protection from predators [29], but also important physiological functions [8284]. The optimum benefits from the shell are achieved when a turtle has reached adult size [29] such that different environmental conditions at low and high latitudes may have little effect on adult survival rate because the shell ensures high survival regardless of ecological context.

It is important to note, however, that our failure to identify differences in survival rates may result from a lack of statistical power [55, 85]. Relatively few reports were available for survival rates of turtles at low (tropical) latitudes thereby possibly limiting the ability to detect differences might they exist. Clearly more long-term studies of turtle population biology in tropical regions are needed and would inform this analysis. This said, differences that may exist but are currently obscured by sampling variation would likely be modest and unlikely to change the overall conclusions of this study.

The distinct life-history traits of turtles at low latitudes (tropical zone) would seem to translate into greater opportunity for sustainable harvest of early stages than those at high latitudes (temperate zone, Fig 5, Table 5). However, our estimated annual sustainable harvest rate (5%) of adult turtles is considerably lower than typical thresholds for sustainable harvest rates (20%) estimated for long-lived animals [19, 86, 87]. In addition, similar to previous studies [30, 31, 35, 77, 8891], high adult survival rates are estimated to be critical to maintain population stability due to their relatively greater contribution to population recruitment than other life stages [35]. Considering these results, harvesting wild adults would appear to present a high risk of causing population declines whether in the temperate or tropical regions, reinforcing the need to develop appropriately enforced alternate management options such as farming of captive reared turtles for meat [92].

Although adult harvest is clearly risky [9, 29, 91] there does appear to be some potential for sustainable exploitation of early stages of tropical freshwater turtle species. Indeed, egg harvest may be more feasible, because it has relatively low risk of causing population declines (Fig 5). Gibbs and Amato (29) suggest that significant additive mortality in the egg stage may not threaten population persistence and, Thorbjarnarson, Lagueux (8) identified that harvesting of eggs is the most promising strategy in the development of sustainable use programs for turtles. Sustainable use programs must of course be developed considering relevant species specific life-history traits. In the case of nest harvesting, focusing on species with sufficient reproductive output (clutch frequency, clutch size and egg mass) and ease of finding nests to be both sustainably harvested and economically viable. Integrating the conservation and harvest of eggs (for consumption, sale and/or rearing of hatchlings for the pet trade) has generated promising results for the conservation of some threatened tropical turtles e.g. Podocnemis unifilis in Peru [93, 94] and our analysis supports the idea that such actions could be feasible in other tropical turtle species.

We found that tropical populations could continue to grow if egg survival was reduced by up to 35%. We suggest that this surplus of eggs can be applied for both sustainable exploitation and conservation. A focus on management and sustainable exploitation of early life stages (e.g. consumption, pet trade) would also complement conservation actions that generally protect the most sensitive adult stages [9, 29]. We found that the margins for additive mortality are so tight (<10% on average in both tropical and temperate species) that the sustainable harvest of adult turtles will likely fail unless additional management actions are incorporated into conservation programs [9].

Integrated management that explicitly considers survival of all life stages is likely to generate more robust and timely increases in exploited turtle populations. Although egg survival produces a relatively small overall effect on population growth rates when compared to adult survival [29, 35], demographic simulations show that increasing survival of eggs and hatchlings can compensate for decreases in adult survival in at least one species of tropical turtle [95]. Additionally, increasing survival of early stages via community-based protection of turtle nesting beaches has been shown to provide conservation success for local communities [94], target species [9497] and also non-target vertebrate and invertebrate taxa [96]. Whilst promising, these results come from species of the South American Podocnemididae (P. expansa and P.unifilis) that remain widely distributed and nest in areas that are both relatively accessible and easy to find for humans [98] i.e. multiple females will lay nests in the same area [9497]. Further examples are needed to understand how the predicted surplus in early life stages can be most effectively exploited in other tropical species, especially small sized and secretive species (e.g. kinosternids in the Americas or geomydids in southeastern Asia). This understanding is required, so that populations can still increase to replace adult turtles, which remain widely targeted and threatened by additional anthropogenic impacts across tropical regions including climate change, forest loss and pollution [1, 9, 12, 18, 19].

An important caveat is that the population dynamics of temperate and tropical species in this study were evaluated using the same survival rate values for eggs due to lack of available published data on these parameters both in temperate and tropical species. Protection of egg and juvenile stages does not produce as large an effect on population growth as protecting adult survival [29], so our conclusions are likely to remain valid despite this untested assumption. It is impossible to obtain estimates applicable to all species, but our results from stage-based population matrices provide useful reference values to analyze the relative effects of additive mortality on different stages [99, 100]. Although our choice of model maybe considered as somewhat naïve [59], with untested assumptions, they accurately represent the described life history of turtle species [58]. Future studies are needed to develop models appropriate for species specific cases. Until data are available on typical nest and juvenile survival in temperate and tropical zones, the relative impact of harvest on populations of temperate and tropical species we estimated must remain tentative.

Together the results of our study imply that sustainable harvesting is difficult to apply as a conservation strategy, both in temperate and tropical turtle species, due to the biological limitations on turtle population growth imposed by their life-history traits. This said, Eisemberg, Rose (18) suggests that complete prohibition of harvesting as a conservation strategy in turtles will not be possible to implement in tropical areas and developing countries, where local communities have long history in using turtle meat and eggs. Conservation strategies that exclude local communities in their practices are often unsuccessful at protecting wildlife [101]. Our findings support the need for sustainable harvest programs to be considered further but cautiously in the regions that have a long history of harvesting turtles for subsistence use, particularly when the species possess density dependent mechanisms to compensate harvest, such as shown in Chelodina rugosa [19, 43]. We reject the assumption often employed in temperate-zone turtle research that “all turtles are the same”, yet also note that demographic differences we observed between temperate and tropical turtles do not translate into obviously greater opportunity for sustainable harvest of adults and juveniles in the tropics. Therefore, carefully constructed sustainable harvest programs may present greater opportunities to succeed in the tropics if based on early (egg and hatchling) stages.

Supporting information

S1 Table. The life-history traits data obtained from literature review.

(DOCX)

S1 File. Carapace length correlations.

(DOCX)

Acknowledgments

We thank N. E. Karraker, B. Underwood, and P. R. Sievert for discussions on ideas and their comments on this draft manuscript and to Y-H. Sung for providing life-history data for the big-headed turtle. We thank Jordi Moya-Larano, Masami Fujiwara and four anonymous reviewers for their comments on earlier versions of the text.

Data Availability

All relevant data are within the paper and its Supporting Information files.

Funding Statement

This work was supported by the United States Agency for International Development (AID-OAA-A11-00012). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Decision Letter 0

Masami Fujiwara

27 Nov 2019

PONE-D-19-28843

Population Dynamics and Biological Feasibility of Sustainable Harvesting as a Conservation Strategy for Tropical and Temperate Freshwater Turtles

PLOS ONE

Dear Dr Norris,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

We received two sets of reviews. Both reviewers are relatively positive about the manuscript. One of the reviewers suggested using the phylogenetic generalized least squares (PGLS). I am not familiar with the method, but it looks promising based on my quick reading. This is an optional analysis to include if you are interested. Otherwise, it will be a potentially interesting future analysis. I also make additional comments below.

We would appreciate receiving your revised manuscript by Jan 11 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

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To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

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Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out.

We look forward to receiving your revised manuscript.

Kind regards,

Masami Fujiwara, PhD

Academic Editor

PLOS ONE

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Additional Editor Comments:

I note that the uses of equations 1 and 2 (lines 164 and 165) assume that the instantaneous population growth rate is close to 0 (finite population growth rate is close to 1). If it is substantially different from 0, the estimated population growth rate is biased. This is discussed in a recent paper by Kendall et al. (2019). I suggest briefly discussing the potential bias.

I also think the interpretations of the results in lines 258-271 should be done carefully. The main problem in the interpretation is that the comparison is done among relative changes in vital rates that populations can afford to bring r to 0 from the current population growth rate. All populations regardless of life-history strategies should have instantaneous population growth rate of 0 on average if they are sustainable. If it is greater than 0, there must be a reason for it. One possibility is that tropical species are severely depleted in the past and currently recovering.

It is more robust to compare the elements of sensitivity matrices (see Caswell 2001). These elements correspond to the slope of the curves plotted in Figure 5. Heppell (1998), for example, uses elasticity analysis. Because matrices are already built, the analysis should be very straightforward. The sensitivity or elasticity analyses still do not include a density-dependent process, which is the key to sustainable harvest. But Caswell et al. (2004) discuss how the sensitivity analysis is related to equilibrium density, and I also have a paper on this topic (Fujiwara 2012).

As minor comments, the interpretation part (e.g. “in aggregate the capacity for sustainable harvest of adults as an additive source of turtle mortality …” lines 270-271) should be moved to Discussion. Figure 5 was referred to in line 262, but it does not show “tropical freshwater turtle species exhibited a moderately higher intrinsic rate of growth than temperate freshwater turtle spices.” The figure only shows instantaneous population growth rate as a function of vital rates. Without knowing vital rates, we cannot tell which has a greater growth rate.

Caswell H, Takada T, Hunter CM. (2004). Sensitivity analysis of equilibrium in density-dependent matrix population models. Ecology Letters 7:380-387.

Fujiwara M. (2012). Demographic diversity and sustainable fisheries. Plos One 7:14.

Kendall BE, Fujiwara M, Diaz-Lopez J, Schneider S, Voigt J, Wiesner S. (2019). Persistent problems in the construction of matrix population models. Ecological Modelling 406:33-43.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

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Reviewer #1: Yes

Reviewer #2: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

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Reviewer #1: Yes

Reviewer #2: Yes

**********

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Reviewer #1: Yes

Reviewer #2: Yes

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Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: I notice this is the second leg of reviews and corrections. I carefully read and reviewed the response letter issued by the authors. The MS was improved from its previous version. Authors addressed all the main issues asked by the reviewers, generating a more concise MS, which is easy to read and to comprehend.

Besides the expressed above, I have some minor observations, which I include in the attached pdf file. I also think authors must address the following minor concerns from the discussion section:

1) Authors should acknowledge the importance of the reproductive effort (the amount of biomass invested in reproduction) rather the clutch size vs. egg size trade-off. Reproductive output (also estimated as relative clutch mass) is important because its analysis describe how reproductive output is packed along reproductive events.

2) The main conclusion of this MS is harvest could be feasible extracting eggs and hatchlings, nevertheless, authors should be limiting their conclusion to large species. It is almost impossible to harvest small size species such kinosternids, or very small clutch size such New World geoemydids, since their clutch size averaged 5 eggs and their nets are difficult to find. Authors also could support their harvest proposal with proved harvesting approaches such ranching or farming in crocodiles.

3) In some turtle lineages such podocnemidds could be feasible to harvest eggs and hatchlings, since these turtles nest massively in large nesting beaches and the process is conspicuous, however, authors should acknowledge that this lineage is reduced to tropical South America, and its nesting habits is more like sea turtles, however, the vast majority of freshwater and terrestrial turtles does not nest this way, but in a more secretive way.

4) Data from sea turtles nesting habits and behavior are also relevant to propose a sustainable harvest program for turtles, but, as I mentioned above, the freshwater turtles that nest collectively are reduce to only one lineage.

Reviewer #2: Major Comments

1. Why not use a PGLS to control for phylogenetic signal? Or conduct both your GAM and PGLS?

2. There are several species used in the analyses that are actually terrestrial. For example, T. carolina, T. ornata, C. mouhotti (see Bonin et al. 2006), C. flavomarginata (see Chen & Lue 1999), V. silvatica (Das 1991), M. tricarinata (Das 1991), G. spengleri (Bonin et al. 2006), H. spinosa (Das 1995; Lim et al. 1995), and G. japonica (Goris 2004) are terrestrial. Either remove these species or rephrase "freshwater" to something that reflect the dataset (e.g., predominately freshwater families).

3. How does the GAM handle highly correlated variables like body size and latitude? It appears you tested for correlations among the bioclimatic variables, so I am assuming it is important. I think you should test for correlation between body size and latitude.

Minor Comments

Abstract

Line 20 and throughout: Please replace “life history trait” with “life-history trait” throughout the manuscript.

Line 25: comma after “harvest”

Line 33: change to “stage-structured matrix”

Line 39: comma after “Yet”

Introduction

Line 60: comma after [7,8]

Line 60: Is there a more up-to-date citation for where freshwater species occur?

Methods

Line 101: How did you treat ranges if the median and mean were not given in an article for a species? In other words, what value did you extract from the range to use in the model?

Line 110: Spell out GBIF

Lines 118-121: How did you extract these variables? Did you use GIS software or google earth?

Everywhere: Figure captions were all over the place. I am assuming this wasn’t the authors’ fault.

Results

Lines 213-214: How were these 12 reports distributed between the tropics and temperate?

Fig 5 – can you include confidence intervals on these figures?

Table 2 – The font of the text is different among the columns.

Discussion

Line 316: Authors use “life-history features”, “life-history characteristics”, and “life-history traits” in this manuscript. Is there a difference among these? If not, be consist and choose one.

All other comments are embedded within the manuscript.

**********

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Reviewer #1: No

Reviewer #2: No

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Attachment

Submitted filename: PONE-D-19-28843_reviewer.pdf

Attachment

Submitted filename: PONE-D-19-28843_reviewer.pdf

PLoS One. 2020 Feb 27;15(2):e0229689. doi: 10.1371/journal.pone.0229689.r003

Author response to Decision Letter 0


28 Jan 2020

Below I provide our replies inline to the original email content.

De: "PLOS ONE" <em@editorialmanager.com>

Para: "Darren Norris" <dnorris75@gmail.com>

Enviado(s): 27/11/2019 12:14:23

Assunto: PLOS ONE Decision: Revision required [PONE-D-19-28843] - [EMID:5d5c1e670f9050e9]

PONE-D-19-28843

Population Dynamics and Biological Feasibility of Sustainable Harvesting as a Conservation Strategy for Tropical and Temperate Freshwater Turtles

PLOS ONE

Dear Dr Norris,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

We received two sets of reviews. Both reviewers are relatively positive about the manuscript. One of the reviewers suggested using the phylogenetic generalized least squares (PGLS). I am not familiar with the method, but it looks promising based on my quick reading. This is an optional analysis to include if you are interested. Otherwise, it will be a potentially interesting future analysis. I also make additional comments below.

Reply: We feel a more in depth phylogenetic/evolutionary analysis is beyond our manuscript aims. We justify this in replies below to reviewer 2.

We would appreciate receiving your revised manuscript by Jan 11 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter.

To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

Please include the following items when submitting your revised manuscript:

• A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). This letter should be uploaded as separate file and labeled 'Response to Reviewers'.

• A marked-up copy of your manuscript that highlights changes made to the original version. This file should be uploaded as separate file and labeled 'Revised Manuscript with Track Changes'.

• An unmarked version of your revised paper without tracked changes. This file should be uploaded as separate file and labeled 'Manuscript'.

Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out.

We look forward to receiving your revised manuscript.

Kind regards,

Masami Fujiwara, PhD

Academic Editor

PLOS ONE

Journal Requirements:

1. When submitting your revision, we need you to address these additional requirements.

Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information.

Reply: We have added captions and in-text citations for the Supporting Information following the plosone guidelines.

3. Please ensure that you refer to Figure 3 in your text as, if accepted, production will need this reference to link the reader to the figure.

Reply: We have added reference to Figure 3 in the Results.

4. We note you have included a table to which you do not refer in the text of your manuscript. Please ensure that you refer to Table 1 in your text; if accepted, production will need this reference to link the reader to the Table.

Reply: We have added reference to Table 1 in the Results.

Additional Editor Comments:

I note that the uses of equations 1 and 2 (lines 164 and 165) assume that the instantaneous population growth rate is close to 0 (finite population growth rate is close to 1). If it is substantially different from 0, the estimated population growth rate is biased. This is discussed in a recent paper by Kendall et al. (2019). I suggest briefly discussing the potential bias.

Reply: Thank you for sharing the reference. We have updated the text of the Methods and Discussion to include the reference and potential bias. This is a brief few sentences that we hope fairly presents the issue. We use “r” to provide a solid theoretical reference [1,2,3] to explore the potential for sustainable harvest of turtle populations. We show that early turtle life stages are most probably the best starting point for developing sustainable harvest programs in tropical turtles Although we present simulation results across the full range of possible survival values (Figure 5), our conclusions come from comparison of values within 40% of minimum positive r value (Table 4). We believe this is “close to zero” and an appropriate and robust use of “r” obtained from stable-stage population projection matrix (equations 1 and 2) that are robust and appropriate for the study group.

[1] Sibly RM, Hone J. Population growth rate and its determinants: an overview. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences. 2002 Sep 29;357(1425):1153-70.

[2] Fuller E, Brush E, Pinsky ML. The persistence of populations facing climate shifts and harvest. Ecosphere. 2015 Sep;6(9):1-6.

[3] Pauly D, Christensen V, Guénette S, Pitcher TJ, Sumaila UR, Walters CJ, Watson R, Zeller D. Towards sustainability in world fisheries. Nature. 2002 Aug;418(6898):689.

I also think the interpretations of the results in lines 258-271 should be done carefully. The main problem in the interpretation is that the comparison is done among relative changes in vital rates that populations can afford to bring r to 0 from the current population growth rate. All populations regardless of life-history strategies should have instantaneous population growth rate of 0 on average if they are sustainable. If it is greater than 0, there must be a reason for it. One possibility is that tropical species are severely depleted in the past and currently recovering.

Reply: We show that early turtle life stages are most probably the best starting point for developing sustainable harvest programs. Our revised Discussion is duly cautious regarding the conclusions from the available data. The major limitation to further analysis is data availability as we clearly state in the Discussion (P26, L464): “An important caveat is that the population dynamics of temperate and tropical species in this study were evaluated using the same survival rate values for eggs due to lack of available published data on these parameters both in temperate and tropical species.”. The quality of the data available needs to be improved before the use of more sophisticated models can be justified.

This (instantaneous growth rate of zero) is rarely the case in the real world [1,2] with effects of harvest coupled with environmental and/or demographic stochasticity generating population cycles regardless of other ecological interactions [3,4]. The values we present are averaged across species and represent a generalization to indicate most plausible direction for future actions. We use “r” to provide a solid theoretical reference [1,2,3,4] to explore the potential for sustainable harvest of global turtle populations. We focus on sustainability of harvested populations, which are by definition not at environmental carrying capacity/equilibrium [4,5,6]. We obtain empirical values from published literature to predict and parameterize values of “Lefkovitch” matrix population models for tropical and temperate species. To identify potential starting points for sustainable harvest of tropical and temperate turtles we then analyse and present these results with reference to different life stages (Figure 5). We feel this approach is clear, robust and easily interpretable to readers.

Obviously further data and analysis are required to establish additional metrics such as those necessary to evaluate optimal harvesting, critical population sizes, maximum growth rates for individual species [6,7,8]. Yet, we feel our conclusions are clearly supported by the analysis and provide a vital first step by identifying early stages as the most likely for sustainable harvest for subsequent analysis on freshwater turtle population dynamics and harvest sustainability.

[1] Lebreton JD. Dynamical and statistical models for exploited populations. Australian & New Zealand Journal of Statistics. 2005 Mar;47(1):49-63.

[2] Lande R, Engen S, Saether BE. Optimal harvesting of fluctuating populations with a risk of extinction. The American Naturalist. 1995 May 1;145(5):728-45.

[3] Fryxell JM, Packer C, McCann K, Solberg EJ, Sæther BE. Resource management cycles and the sustainability of harvested wildlife populations. Science. 2010 May 14;328(5980):903-6.

[4] Sibly RM, Hone J. Population growth rate and its determinants: an overview. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences. 2002 Sep 29;357(1425):1153-70.

[5] Fuller E, Brush E, Pinsky ML. The persistence of populations facing climate shifts and harvest. Ecosphere. 2015 Sep;6(9):1-6.

[6] Pauly D, Christensen V, Guénette S, Pitcher TJ, Sumaila UR, Walters CJ, Watson R, Zeller D. Towards sustainability in world fisheries. Nature. 2002 Aug;418(6898):689.

[7] Rose KA, Cowan JH, Winemiller KO, Myers RA, Hilborn R. Compensatory density dependence in fish populations: importance, controversy, understanding and prognosis. Fish and Fisheries. 2001 Dec 1;2(4):293-327.

[8] Schaefer MB. Some considerations of population dynamics and economics in relation to the management of the commercial marine fisheries. Journal of the Fisheries Board of Canada. 1957 May 1;14(5):669-81.

It is more robust to compare the elements of sensitivity matrices (see Caswell 2001). These elements correspond to the slope of the curves plotted in Figure 5. Heppell (1998), for example, uses elasticity analysis. Because matrices are already built, the analysis should be very straightforward. The sensitivity or elasticity analyses still do not include a density-dependent process, which is the key to sustainable harvest. But Caswell et al. (2004) discuss how the sensitivity analysis is related to equilibrium density, and I also have a paper on this topic (Fujiwara 2012).

Reply: Thank you for this suggestion. We have added additional elasticity analysis to the Methods and Results. We prefer to retain Figure 5, as we believe, considering our study objectives that this is an informative way to present the results of our modelling synthesis for the diverse readership of plosone. To improve clarity for readers we have extensively revised Figure 5 following suggestions from reviewers – e.g. adding confidence and prediction bands and adding additional detail to the legend text. We are reluctant to continue further exploring changes in r / lambda (e.g. perturbation analysis), as we feel there is not sufficient data currently available to support conclusions from additional analysis. This is clearly stated in the Discussion (P26, L464): “An important caveat is that the population dynamics of temperate and tropical species in this study were evaluated using the same survival rate values for eggs due to lack of available published data on these parameters both in temperate and tropical species.”. The quality of the data available needs to be improved before the use of more sophisticated models can be justified.

As minor comments, the interpretation part (e.g. “in aggregate the capacity for sustainable harvest of adults as an additive source of turtle mortality …” lines 270-271) should be moved to Discussion. Figure 5 was referred to in line 262, but it does not show “tropical freshwater turtle species exhibited a moderately higher intrinsic rate of growth than temperate freshwater turtle spices.” The figure only shows instantaneous population growth rate as a function of vital rates. Without knowing vital rates, we cannot tell which has a greater growth rate.

Caswell H, Takada T, Hunter CM. (2004). Sensitivity analysis of equilibrium in density-dependent matrix population models. Ecology Letters 7:380-387.

Fujiwara M. (2012). Demographic diversity and sustainable fisheries. Plos One 7:14.

Kendall BE, Fujiwara M, Diaz-Lopez J, Schneider S, Voigt J, Wiesner S. (2019). Persistent problems in the construction of matrix population models. Ecological Modelling 406:33-43.

Reply: We have excluded the interpretation from the Results. To improve clarity for readers we have extensively revised Figure 5 following suggestions from reviewers – e.g. adding confidence and prediction bands and adding additional detail to the legend text. We feel this is now clarified, but are happy to follow any additional editorial guidance.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

________________________________________

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

________________________________________

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

________________________________________

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

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Reviewer #2: Yes

________________________________________

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1:

I notice this is the second leg of reviews and corrections. I carefully read and reviewed the response letter issued by the authors. The MS was improved from its previous version. Authors addressed all the main issues asked by the reviewers, generating a more concise MS, which is easy to read and to comprehend.

Besides the expressed above, I have some minor observations, which I include in the attached pdf file. I also think authors must address the following minor concerns from the discussion section:

1) Authors should acknowledge the importance of the reproductive effort (the amount of biomass invested in reproduction) rather the clutch size vs. egg size trade-off. Reproductive output (also estimated as relative clutch mass) is important because its analysis describe how reproductive output is packed along reproductive events.

Reply: We have followed the reviewers suggestion and clarified the Discussion as follows (P18 L343-348): “Additionally, clutch mass (number of eggs x egg size) and reproductive output (often estimated as relative clutch mass) can also vary with latitude [33, 41]. Further studies are necessary to examine how reproductive output correlates to differences in population growth rates, especially as egg size and reproductive output have been shown to be important predictors of age at sexual maturity [32, 33].”

2) The main conclusion of this MS is harvest could be feasible extracting eggs and hatchlings, nevertheless, authors should be limiting their conclusion to large species. It is almost impossible to harvest small size species such kinosternids, or very small clutch size such New World geoemydids, since their clutch size averaged 5 eggs and their nets are difficult to find. Authors also could support their harvest proposal with proved harvesting approaches such ranching or farming in crocodiles.

Reply: We have added the following to the Discussion (P22 L413 ): “Sustainable use programs must of course be developed considering relevant life-history traits. In the case of nest harvesting, focusing on species with sufficient reproductive output (clutch frequency, clutch size and egg mass) and ease of finding nests to be economically viable.”. We do not feel that it is necessary to add reference to crocodiles, which is likely to make the text more confusing for readers. We do include a highly relevant example for tropical freshwater turtles (Podocnemis species).

3) In some turtle lineages such podocnemidds could be feasible to harvest eggs and hatchlings, since these turtles nest massively in large nesting beaches and the process is conspicuous, however, authors should acknowledge that this lineage is reduced to tropical South America, and its nesting habits is more like sea turtles, however, the vast majority of freshwater and terrestrial turtles does not nest this way, but in a more secretive way.

Reply: Our objective is not to evaluate feasibility of myriad alternatives. Rather we identify an appropriate starting point for conservation action based on relevant biological parameters. There are many species (21 of the 165 in our study) with clutch sizes equal to or greater than P. unifilis. We hope future studies can build on the data presented to develop relevant case studies demonstrating the feasibility of different sustainable harvest options of early stages in different species. We have rephrased the Discussion as follows (P23, L436): “Whilst promising, these results come from two species of the South American Podocnemididae (P. expansa and P.unifilis) that remain widely distributed and nest in areas that are both relatively accessible and easy to find for humans e.g. multiple females will lay nests in the same area [91-94]. Further examples are needed to understand how the predicted surplus in early life stages can be most effectively exploited, so that populations can still increase to replace adults that remain widely targeted and threatened by additional anthropogenic impacts across tropical regions including climate change, forest loss and pollution [1, 9, 12, 18, 19].”

4) Data from sea turtles nesting habits and behavior are also relevant to propose a sustainable harvest program for turtles, but, as I mentioned above, the freshwater turtles that nest collectively are reduce to only one lineage.

Reply: Thank you for the suggestion. “collective nesting” is not necessary for sustainable harvest of eggs. Many turtles nest relatively close together, simply as a result of the availability of suitable nesting habitat. Podocnemididae have been intensively studied for over 40 years, which is why we are able to include them in the Discussion. The vast majority of tropical turtles do not have such a knowledge base. However, there are innumerable examples (e.g. North American and Australian species) where different females nest in in the same areas. We have rephrased the Discussion to clarify as follows (P23, L436): “Whilst promising, these results come from two species of the South American Podocnemididae (P. expansa and P.unifilis) that remain widely distributed and nest in areas that are both relatively accessible and easy to find for humans e.g. multiple females will lay nests in the same area [91-94]. Further examples are needed to understand how the predicted surplus in early life stages can be most effectively exploited, so that populations can still increase to replace adults that remain widely targeted and threatened by additional anthropogenic impacts across tropical regions including climate change, forest loss and pollution [1, 9, 12, 18, 19].”

Reviewer #1 Comments from .pdf file:

Abstract

This is a very long sentence, pelase reword.

Reply: We have rephrased as follows: “. Studies conducted exclusively in temperate zones have revealed that typical turtle life history traits (including delayed sexual maturity and high adult survivorship) make sustainable harvest programs an unviable strategy for turtle conservation.”

This conclusion should be adjusted to body size. Several tropical species have small sizes, withe very small eggs. The harvest of these small eggs should be for ranching only.

Reply: We have added the following to the Discussion (P22 L413 ): “Sustainable use programs must of course be developed considering relevant life-history traits. In the case of nest harvesting, focusing on species with sufficient reproductive output (clutch frequency, clutch size and egg mass) and ease of finding nests to be economically viable.”.

Again, I think this paragraph have very long sentences. Please reword.

Reply: We have rephrased as follows: “Further studies are urgently needed to understand how the predicted population surplus in early life stages can be most effectively incorporated into conservation programs for tropical turtles.”

Numbers in the table does not seem to alligned. Pleas check the alligment of the table columns.

Reply: We have carefully revised all tables to ensure alignment, fonts and formatting are consistent and follow plosone submission guidelines.

There is an extra tab here. Reply: corrected.

Add a period here.

Reply: We feel the sentence (P20, L369) is clear and reads well. We prefer to retain as originally submitted, but are happy to follow editorial guidance.

Change the colon for a period

Reply: We agree that this is a long sentence, yet we feel the sentence (P22, L421) is clear and reads well. We prefer to retain as originally submitted, but are happy to follow editorial guidance.

add a colon here

Reply: we believe adding a colon here (P23, L431) would be incorrect usage. We prefer to retain as originally submitted, but are happy to follow editorial guidance.

please do include the complet generic name here. It is the last sentence of the MS.

Reply: added as requested.

Reviewer #2: Major Comments

1. Why not use a PGLS to control for phylogenetic signal? Or conduct both your GAM and PGLS? Comment from .pdf file “Why not use PGLS instead of GAMs with family as a random effect?” There are plenty of turtle phylogeny out there (i.e., Pereira et al. 2017; Mol. Phylogenet Evol. 113:59-66) to collect the branch lengths. Other working with turtles (i.e., Agha et al. 2018 JEB) conducted both PGLS and GLMs and found different results.

Reply: We thank the reviewer for the interesting suggestion, but feel a more in depth phylogenetic/evolutionary analysis is beyond our manuscript aims. Looking at Table 1 and Table 2 in Agha et al. 2018 JEB (doi: 10.1111/jeb.13223) the LMM and PGLS results appear consistent. The differences reported could be attributable to other factors such as the inclusion of strongly correlated explanatory variables, i.e. Agha et. al. included both latitude and strongly correlated bioclimatic variables (e.g. mean temperature and annual precipitation) in the analysis. Table 2 is particularly revealing, as it is only the relative importance of latitude that differs in a meaningful way between LMM and PGLS results. This suggests differences could be attributable to how the different algorithms are affected by correlated variables (multicollinearity) and does not necessarily reflect any biologically meaningful difference. We have taken care to avoid collinearity between variables (all pairwise correlations <0.25). Based on these considerations, we prefer to retain our approach with Family as a random effect and believe the conclusions from our GAM analysis are robust. We hope that future studies can take advantage of the dataset we provide and explore further questions related to phylogenetic and evolutionary relationships.

2. There are several species used in the analyses that are actually terrestrial. For example, T. carolina, T. ornata, C. mouhotti (see Bonin et al. 2006), C. flavomarginata (see Chen & Lue 1999), V. silvatica (Das 1991), M. tricarinata (Das 1991), G. spengleri (Bonin et al. 2006), H. spinosa (Das 1995; Lim et al. 1995), and G. japonica (Goris 2004) are terrestrial. Either remove these species or rephrase "freshwater" to something that reflect the dataset (e.g., predominately freshwater families).

Reply: The functional traits (e.g. diet, habitat use) of different species are likely to be important for consideration in future studies. Yet, this is not a focus of our study. There is no reason to expect differences in survival between terrestrial, semi-aquatic and aquatic species. We have rephrased throughout the text and also clarified as follows in the Methods (P6, L104): “Marine turtles (Cheloniidae and Dermochelyidae) and tortoises (Testudinidae) were excluded from the results. Although some families (e.g. Emydidae) contain a mix of terrestrial (e.g. Terrapene carolina), semi-aquatic (e.g. Trachemys scripta) and aquatic (e.g. Terrapene coahuila) species, as our analysis is general across groups hereafter we refer to all as “freshwater turtles” to distinguish them from marine species or tortoises.”

3. How does the GAM handle highly correlated variables like body size and latitude? It appears you tested for correlations among the bioclimatic variables, so I am assuming it is important. I think you should test for correlation between body size and latitude.

Reply: Thank you for the interesting question. We do not agree that at the level of our study (global/species) body size is necessarily strongly correlated with latitude for our study group – freshwater turtles. We dedicated most of a paragraph to this issue (P19, L356-365), and as stated in the Discussion of our original submission (P19, L357): “Although it has been suggested that turtles tend to have larger body size at higher latitudes [77] a recent review (compilation of 245 species) failed to uncover clear latitudinal trends in turtle body size [38].” To clarify for readers we have also added the correlation test to the Methods as follows (P7, L144): “All four model variables were only weakly correlated (all pairwise correlations < 0.25) with carapace length (S1 file) so could be included in the GAM analysis [47].” We have also added Supporting information S1 file with the pairwise correlation values.

Minor Comments

Abstract

Line 20 and throughout: Please replace “life history trait” with “life-history trait” throughout the manuscript.

Reply: updated throughout the text as requested.

Line 25: comma after “harvest”. Reply: updated as requested.

Line 33: change to “stage-structured matrix”. Reply: updated as requested.

Line 39: comma after “Yet” Reply: updated as requested.

Introduction

Line 60: comma after [7,8] Reply: updated as requested.

Line 60: Is there a more up-to-date citation for where freshwater species occur?

Reply: We have also added: J. F. M. Rodrigues, M. Á. Olalla-Tárraga, J. B. Iverson, T. S. B. Akre, J. A. F. Diniz-Filho, Time and environment explain the current richness distribution of non-marine turtles worldwide. Ecography 40, 1402-1411 (2017).

Methods

Line 101: How did you treat ranges if the median and mean were not given in an article for a species? In other words, what value did you extract from the range to use in the model?

Reply: We have clarified as follows: “(midpoint calculated and used in < 1% of cases)”

Line 110: Spell out GBIF. Reply: updated as requested.

Lines 118-121: How did you extract these variables? Did you use GIS software or google earth?

Reply: we have clarified in the Methods (P7, L123) as follows: “Two bioclimatic variables relevant to freshwater turtle biology, Mean Temperature of Warmest Quarter (bio10, oC) and Precipitation of Driest Quarter (bio17, mm) were obtained from WorldClim – Global Climate Data (5-arc ≈ 10 km resolution, www.worldclim.org, [44]) and matched to the coordinates of each turtle life-history report using functions available in the raster package [45].

Everywhere: Figure captions were all over the place. I am assuming this wasn’t the authors’ fault.

Reply: We have included Figure captions following Plosone submission guidelines available at the time of submission (https://journals.plos.org/plosone/s/figures#loc-captions): “Place figure captions in the manuscript text in read order, immediately following the paragraph where the figure is first cited.”.

Results

Lines 213-214: How were these 12 reports distributed between the tropics and temperate?

Reply: We have clarified as follows: “Only 12 of these life history life-history trait reports (5 tropical and 3 temperate species) were from captive breeding situations while the remainder were from wild populations.”.

Fig 5 – can you include confidence intervals on these figures?

Reply: To improve clarity for readers we have extensively revised Figure 5 following suggestions from reviewers – e.g. adding confidence and prediction bands and adding additional detail to the legend text.

Table 2 – The font of the text is different among the columns.

Reply: We have carefully revised all tables to ensure alignment, fonts and formatting are consistent and follow plosone submission guidelines.

Discussion

Line 316: Authors use “life-history features”, “life-history characteristics”, and “life-history traits” in this manuscript. Is there a difference among these? If not, be consist and choose one.

Reply: we have corrected to life-history traits throughout the text.

All other comments are embedded within the manuscript.

Below are our replies to the additional reviewer comments from the .pdf file (majority of comments in the .pdf are duplicates of the above comments):

Does this mean you had 44 species with complete data? That is to say you had 44 species with Lat, CL, CS, CF, Age, and Fecundity? If not, how did the model handle missing data?

Reply: models were built separately for each life-history trait (Methods P8 L148) and therefore had different sample sizes (as originally presented in Table 2). We have added sample sizes to Table 1.

What GIS software did you use to create this figure?

Reply: Figure 2 was produced using R (ggplot2 and sf packages). We do not feel necessary to add this detail, as this is a purely visual representation and readers are free to reproduce using any of the myriad software/apps available. Following plosone guidelines we add details of the data sources in the figure legend and also provide geographic coordinates in the Supporting Information to enable others to reproduce our results.

What about body size?

Reply: As we mention in the Methods (P8, L143) :carapace length (ln-transformed) was included to control for its well-established influence on life-history traits. We are not evaluating species level natural history. As such we do not feel that adding additional Results (and therefore Discussion) regarding body size is necessary to enable readers to evaluate the validity or robustness of our conclusions (comparison of sustainable harvest between temperate and tropical turtles).

I don't think you need this in the manuscript. Either remove or provide in the supplemental materials.

Reply: we prefer to retain Figure 1 in the manuscript, as we feel this is relevant for the broad readership of plosone. But are happy to follow editorial guidance.

Attachment

Submitted filename: Rach_replies.docx

Decision Letter 1

Masami Fujiwara

6 Feb 2020

PONE-D-19-28843R1

Population Dynamics and Biological Feasibility of Sustainable Harvesting as a Conservation Strategy for Tropical and Temperate Freshwater Turtles

PLOS ONE

Dear Dr Norris,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

I think you have responded to all of the comments and revised the manuscript accordingly. A reviewer provided comments, and I would like to give you an opportunity to respond to them (and possibly incorporate them). Please also read the formatting and other guideline of PLoS One carefully at this stage and resubmit it.   

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We look forward to receiving your revised manuscript.

Kind regards,

Masami Fujiwara, PhD

Academic Editor

PLOS ONE

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Authors addressed all prevouis comments. I think this is a very complete and improved version of the manuscript. It is clear that your management suggestions should be consider only for large and gregarious species. The application of your results to secretive and small size/clutch species should be wait for more data on specific study systems such emydids and kinosternids in North America or geomydids in Souteastern Asia.

**********

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PLoS One. 2020 Feb 27;15(2):e0229689. doi: 10.1371/journal.pone.0229689.r005

Author response to Decision Letter 1


6 Feb 2020

PONE-D-19-28843R1

Population Dynamics and Biological Feasibility of Sustainable Harvesting as a Conservation Strategy for Tropical and Temperate Freshwater Turtles

PLOS ONE

Dear Dr Norris,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

I think you have responded to all of the comments and revised the manuscript accordingly. A reviewer provided comments, and I would like to give you an opportunity to respond to them (and possibly incorporate them). Please also read the formatting and other guideline of PLoS One carefully at this stage and resubmit it.

Reply: We are glad that the Editor and reviewer agree that we have adequately responded to the extensive and detailed suggestions that followed our initial submission. We have revised the content to ensure that we follow PLoSone guideline. Based on the reviewers minor suggestion we have added a further sentence to clarify the text for readers. We have added the phrase “species specific” at line 437 :

And extended the following sentence at line 463 to include the examples suggested by the reviewer: “Further examples are needed to understand how the predicted surplus in early life stages can be most effectively exploited in other tropical species, especially small sized and secretive species (e.g. kinosternids in the Americas or geomydids in southeastern Asia).”

We would appreciate receiving your revised manuscript by Mar 22 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter.

To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

Please include the following items when submitting your revised manuscript:

• A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). This letter should be uploaded as separate file and labeled 'Response to Reviewers'.

• A marked-up copy of your manuscript that highlights changes made to the original version. This file should be uploaded as separate file and labeled 'Revised Manuscript with Track Changes'.

• An unmarked version of your revised paper without tracked changes. This file should be uploaded as separate file and labeled 'Manuscript'.

Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out.

We look forward to receiving your revised manuscript.

Kind regards,

Masami Fujiwara, PhD

Academic Editor

PLOS ONE

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

________________________________________

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

________________________________________

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

________________________________________

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

________________________________________

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

________________________________________

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Authors addressed all prevouis comments. I think this is a very complete and improved version of the manuscript. It is clear that your management suggestions should be consider only for large and gregarious species. The application of your results to secretive and small size/clutch species should be wait for more data on specific study systems such emydids and kinosternids in North America or geomydids in Souteastern Asia.

Reply: We are glad that the Editor and reviewer agree that we have adequately responded to the extensive and detailed suggestions that followed our initial submission. We have revised the content to ensure that we follow PLOSone guideline. Based on the reviewers minor suggestion we have added a further sentence to clarify the text for readers. We have added the phrase “species specific” at line 437 :

And extended the following sentence at line 463 to include the examples suggested by the reviewer: “Further examples are needed to understand how the predicted surplus in early life stages can be most effectively exploited in other tropical species, especially small sized and secretive species (e.g. kinosternids in the Americas or geomydids in southeastern Asia).”

Attachment

Submitted filename: Rachmansah_replies02.docx

Decision Letter 2

Masami Fujiwara

12 Feb 2020

Population Dynamics and Biological Feasibility of Sustainable Harvesting as a Conservation Strategy for Tropical and Temperate Freshwater Turtles

PONE-D-19-28843R2

Dear Dr. Norris,

We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements.

Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication.

Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

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With kind regards,

Masami Fujiwara, PhD

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Acceptance letter

Masami Fujiwara

13 Feb 2020

PONE-D-19-28843R2

Population Dynamics and Biological Feasibility of Sustainable Harvesting as a Conservation Strategy for Tropical and Temperate Freshwater Turtles

Dear Dr. Norris:

I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

For any other questions or concerns, please email plosone@plos.org.

Thank you for submitting your work to PLOS ONE.

With kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Masami Fujiwara

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Table. The life-history traits data obtained from literature review.

    (DOCX)

    S1 File. Carapace length correlations.

    (DOCX)

    Attachment

    Submitted filename: Rchmansah_replies.docx

    Attachment

    Submitted filename: PONE-D-19-28843_reviewer.pdf

    Attachment

    Submitted filename: PONE-D-19-28843_reviewer.pdf

    Attachment

    Submitted filename: Rach_replies.docx

    Attachment

    Submitted filename: Rachmansah_replies02.docx

    Data Availability Statement

    All relevant data are within the paper and its Supporting Information files.


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