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. 2020 Mar 18;10:4933. doi: 10.1038/s41598-020-61692-x

Jdp2-deficient granule cell progenitors in the cerebellum are resistant to ROS-mediated apoptosis through xCT/Slc7a11 activation

Chia-Chen Ku 1,2,#, Kenly Wuputra 1,2,#, Kohsuke Kato 3, Wen-Hsin Lin 1,2, Jia-Bin Pan 1,2, Shih-Chieh Tsai 4,16, Che-Jung Kuo 4, Kan-Hung Lee 5, Yan-Liang Lee 6, Ying-Chu Lin 7, Shigeo Saito 8,9, Michiya Noguchi 10, Yukio Nakamura 10, Hiroyuki Miyoshi 1,11, Richard Eckner 12, Kyosuke Nagata 3, Deng-Chyang Wu 2,13, Chang-Shen Lin 1,14,, Kazunari K Yokoyama 1,2,15,
PMCID: PMC7080836  PMID: 32188872

Abstract

The Jun dimerization protein 2 (Jdp2) is expressed predominantly in granule cell progenitors (GCPs) in the cerebellum, as was shown in Jdp2-promoter-Cre transgenic mice. Cerebellum of Jdp2-knockout (KO) mice contains lower number of Atoh-1 positive GCPs than WT. Primary cultures of GCPs from Jdp2-KO mice at postnatal day 5 were more resistant to apoptosis than GCPs from wild-type mice. In Jdp2-KO GCPs, the levels of both the glutamate‒cystine exchanger Sc7a11 and glutathione were increased; by contrast, the activity of reactive oxygen species (ROS) was decreased; these changes confer resistance to ROS-mediated apoptosis. In the absence of Jdp2, a complex of the cyclin-dependent kinase inhibitor 1 (p21Cip1) and Nrf2 bound to antioxidant response elements of the Slc7a11 promoter and provide redox control to block ROS-mediated apoptosis. These findings suggest that an interplay between Jdp2, Nrf2, and p21Cip1 regulates the GCP apoptosis, which is one of critical events for normal development of the cerebellum.

Subject terms: Apoptosis, Molecular neuroscience

Introduction

Reactive oxygen species (ROS) are formed mainly through the reduction of oxygen in mitochondria. ROS include oxygen radicals and some non-radical oxygen derivatives such as hydrogen peroxide (H2O2), O3, and singlet oxygen1,2. ROS are also implicated in the progression of neurological diseases, including Alzheimer’s and Parkinson’s diseases, and stroke-related dementia35. The cerebellum is the most vulnerable part of the brain to developmental abnormalities after exposure to oxidants6,7. In the cerebellum, ROS exert a wide variety of actions, which range from involvement in cell proliferation to cell death, according to the “determination rule” of cell fate1. Understanding these actions of ROS during neuron development may help provide new information about the pathogenesis of neurological diseases. Intracellular ROS activity depends on the equilibrium between ROS generation and the activities of the antioxidant systems. Intracellular glutathione (GSH) scavenges a variety of ROS and is an obligate substrate of glutathione peroxidase for detoxification of H2O28. The ratio of reduced GSH to oxidized glutathione disulfide (GSSG) is an important determinant of the intracellular redox state and redox signalling9. The biosynthesis of GSH is regulated by several genes including those encoding members of the cystine–glutamate antiporter (Xc–) system, which includes solute carrier family 7, member 11 (Slc7a11)1012 as the transporter subunit and solute carrier family 3, member 2 (Slc3a2 or CD98 or 4F2) as the binding partner13,14. The Xc– system is a sodium-independent antiporter of cystine and glutamate that traps extracellular cystine in exchange for intracellular glutamate at a 1:1 molar ratio15. CD44v16 has been reported to be a positive regulator of Slc7a11 by recruiting OTUB1, an ovarian tumour family deubiquitinase17, which decreases the sensitivity of cancer cells to oxidative stress and ferroptosis18. Intracellular cystine is taken up by the Xc–system and reduced to cysteine, which is consumed during protein synthesis and finally to produce GSH, an important factor in redox balance10.

The nuclear factor erythroid 2-related factor 2 (Nrf2), which is a transcription factor in the basic leucine zipper family, controls redox homeostasis and facilitates neuronal adaptation to hostile oxidative environments19. Under basal conditions, Nrf2 is sequestered in the cytoplasm by the Kelch-like ECH-associated protein 1 (Keap-1). Upon stimulation by oxidants, Nrf2 is released from Keap-1 and binds to antioxidant response elements (AREs) in the nucleus, where it upregulates NAD(P)H quinone dehydrogenase 1 (NQO-1) and the genes involved in GSH production1921. Slc7a11 is induced by Nrf2 in human cancers. Slc7a11 facilitates oncogenic RAS transformation by preserving the intracellular redox balance22. By contrast, inhibition of Slc7a11 leads to intracellular cysteine depletion and increases ROS levels, which activate non-apoptotic forms of cell death such as ferroptosis18. The Nrf2 complex has been recently shown to contain ADP ribosylation factor Arf as a binding partner both in vitro and in vivo23,24.

Nrf2 deficiency makes neurons susceptible to oxidant-induced injury25,26. Nrf2–ARE activity is lower in forebrain neurons than in astrocytes, and this difference is required for neuronal development27,28. The phase II ligand tert-butyl hydroquinone induces the expression of the ARE-containing genes Gst1 and Nqo1 in astrocytes, but not in cortical neurons. However, astrocytes can exert neuroprotective effects in a cell-nonautonomous manner21,29. Nrf2-regulated GSH also plays a major antioxidative role in the nervous system30, where it antagonizes oxidation-mediated stress and apoptosis elicited by ethanol exposure in cerebral cortical neurons31.

GSH levels may fluctuate during brain development. A sudden increase in GSH expression in the mouse brain occurs at postnatal day 12 (P12), after which GSH remains at a high level until adulthood32. By contrast, another study reported that the GSH level increases transiently during the first postnatal week, after which it returns to the basal level and then remains low during the subsequent stages of cerebellar development33. Therefore, the level of GSH during cerebellar development is still debated.

During embryonic and postnatal development, cerebellar subtypes seem to be generated in a sequential manner from two distinct germinal centres such as the ventricular zone (VZ) and the rhombic lip (RL)34. The VZ is defined by the specific expression of transcription factors, such as Mash1, neurogenins, and Ptf1A35. The RL is characterized by the expression of Atoh1 and Pax636. During postnatal development, the VZ delaminates to bring about the secondary germinal centre, the prospective white matter37. By contrast, the RL progenitor migrates tangentially above the subapical surface to give rise to the external granular layer38. The VZ progenitors also generate all GABAergic neurons and cerebellar glial cells, whereas the RL progenitors produce all glutamatergic neurons39.

The Jun dimerization protein 2 (Jdp2) is a member of the activator protein 1 (AP-1)–activating transcription factor (ATF) family. Jdp2 is involved in transcriptional repression via multiple mechanisms, including DNA binding and competition with other AP-1–ATF family members, inhibition of heterodimer formation with other transcription factors, recruitment of histone deacetylase-3 (HDAC3), and inhibition of histone acetylation and histone chaperone4042. Jdp2 is also a cofactor of the Nrf2‒MafK complex, which is involved in the regulation of AREs and ROS production in mouse embryonic fibroblasts (MEFs)43. Jdp2 binds directly to the core sequence of AREs, where it associates with Nrf2 and MafK. Binding of Jdp2 to AREs promotes the transcription of genes encoding antioxidant and detoxification enzymes43, through which Jdp2 suppresses ROS production and confers a more reduced intracellular environment in MEFs.

The proper type, location, and number of neurons are determined by the critical interplay between transcription factors and signalling, which ensures the adequate development of the cerebellum37,38,44. However, the role of Jdp2 in the development and cell death of cerebellar neurons remains largely unknown. In the study reported here, we found that the Jdp2 promoter is activated predominantly in the mouse cerebellum. Jdp2 deficiency caused less apoptosis via the dysregulation of antioxidation activity in granule cell progenitors (GCPs) from the cerebellum in knockout (KO) mice than in those from wild-type (WT) mice. These effects were associated with abnormal cerebellar development in the Jdp2-KO mice.

Results

Predominant activation of the Jdp2 promoter in the cerebellum

Jdp2 promoter-Cre transgenic mice were obtained and crossed with ROSA26R45 and Z/EG reporter mice46. Sibling breeding of double-transgenic mice of the Jpd2 promoter-Cre/ZEG or Jdp2 promoter-Cre/ROSA26R strains was confirmed by LacZ (β-Gal) staining, green fluorescent protein (GFP) signal detection, and polymerase chain reaction (PCR) genotyping. Previously we reported that Jdp2 promoter-Cre/ZEG mice expressed GFP signals in the brain at postnatal day 24 (P24), predominantly in the cerebellum47. The β-Gal staining showed that signals are also present in the cerebellum of Jdp2 promoter-Cre/ROSA26R mice at P6 (Fig. 1a). The expression of Jdp2-specific transcripts was also detected in the brain, as reported previously48, which confirms that the β-Gal or GFP activities observed in the cerebellum are derived from the Jdp2 promoter. These data suggest that the Jdp2 promoter is activated in the cerebellum, particularly in the region rich in granule cells.

Figure 1.

Figure 1

No loss or surplus of cerebellar lobes was observed in granule cells from Jdp2-KO mice, where lower expression of Atoh-1 was detected in these cells. (a) β-Gal staining at P6 in Jdp2-Cre/ROS26R mice showed signals in the regions rich in cerebellar granule cells (magnification 20×) (GCPs; right panel; magnification 100×). (b) Haematoxylin and eosin staining of the cerebellum from WT 129-C57/BL6J and Jdp2-KO 129-C57/BL6J mice. (c) GCPs were prepared from WT and Jdp2-KO mice and stained for Atoh-1. Atoh-1-stained cells were quantified according to the calculation presented in Materials and Methods. *p < 0.05. (d) Western blot analysis showed that the expression of Atoh-1 was about 87% lower in GCPs from Jdp2-KO mice than in those from WT mice.

No loss or surplus of lobes in the cerebellum of Jdp2-KO mice

Next, we compared the cerebellar morphology between WT and Jdp2-KO mice49. There was no significant loss or surplus of lobes between WT and Jdp2-KO cerebella (Fig. 1b). In the early development of the cerebellum, granule cell progenitors (GCPs) with Atoh-1 expression represent >80% of the cell population of the external germinal layer49. Immunofluorescent staining and western blot demonstrated that both the Atoh-1 positive cells (Fig. 1c) and Atoh-1 expression level (Fig. 1d) were decreased in Jdp2-KO GCPs as compared with those in WT primary GCPs. Furthermore, the results of RNA sequencing and RT-PCR showed that the expression of some cerebellar (e.g., Zic1, Zic2, Ntrk3, NGF, and BDNF) and neuronal (e.g., Gabra1, Gabra 2, and Glra2) genes were deregulated (Supplementary Fig. 1a,b). These observations suggest that Jdp2 plays a role in the maturation and differentiation of GCPs, which is critical for lobe development in the cerebellum.

GCP resistance to apoptosis via Jdp2 deficiency

To examine the role of Jdp2 in GCP homeostasis, which is important for normal cerebellum development, the apoptosis of GCPs was examined. The immunostaining with anti-activated Caspase 3 antibody showed that the cerebellum section from WT mice exhibited the higher percentage of stained granule cells than those from Jdp2-KO mice at postnatal day 6 (Fig. 2a). The data pertaining to the staining using antibodies against caspase 3 and cleaved caspase 3 also showed a 1.5‒2-fold percentage of granule cells with staining in WT cerebella compared with the Jdp2-KO counterparts. However, the cells that were stained with isotypic control IgG showed almost no staining. To confirm this result in vivo, TUNEL assay also showed that the percentage of apoptotic cells in WT and Jdp2-KO GCPs was 22% and 11%, respectively (Fig. 2b,c). Annexin V assays confirmed a decrease in apoptosis in Jdp2-KO GCPs (Fig. 2d). Compared with WT GCPs, Jdp2-KO GCPs showed a 20% reduction in the activities of caspase 3 and 7 (Fig. 2e) and decreased protein levels of caspase 3, cleaved caspase 3, Bad, Bax, and cytochrome C (Fig. 2f). The co-staining with anti-Atoh1 (Alexa-488) and anti-cleaved caspase 3 (Alexa-594) were also detected (data not shown). These findings suggest that Jdp2-KO GCPs undergo less apoptosis than do WT GCPs in vivo and in vitro.

Figure 2.

Figure 2

Decreased apoptosis in Jdp2-KO GCPs. (a) Cerebellum sections from WT and Jdp2-KO mice were stained with anti-caspase 3 and anti-cleaved caspase 3 antibodies and with control IgG, as described in Materials and Methods. The red arrows indicate the granule cells stained by the anti-cleaved caspase 3 antibody. (b) GCPs from WT and Jdp2-KO mice were incubated with or without TCDD (10 nM) for 24 h, and the cells were stained for TUNEL assays as described in Materials and Methods. (c) Quantification of apoptotic cells from the images of panel (b). Each value represents the mean ± SEM (n = 3); *p < 0.05. (d) Annexin V staining of WT and Jdp2-KO GCPs was performed as described in Materials and Methods. Each value represents the mean ± SEM (n = 3); *p < 0.05. (e) Caspase 3/7 activities were measured in 3 × 105 WT and Jdp2-KO GCPs in 96-well plates. Each value represents the mean ± SEM (n = 3); *p < 0.05. (f) Comparative expression of apoptosis-related proteins in WT and Jdp2-KO GCPs (n = 5). The right lane indicates the apparent molecular weight. The relative intensity of each band was calculated relative to β-actin. (g) Quantification of apoptotic cells in TCDD (50 nM)-treated WT and Jdp2-KO GCPs. Each value represents the mean ± SEM (n = 3); *p < 0.05. (h) Cell viability of WT and Jdp2-KO GCPs with increasing doses of TCDD (1.0‒50 nM). Each value represents the mean ± SEM (n = 3); *p < 0.05.

It is reported that TCDD exposure to the developing brain causes cognitive disability and motor dysfunction50. Here, we found that TCDD treatment (50 nM) increased the number of apoptotic cells to a greater extent in WT (57%) vs. Jdp2-KO (23%) GCPs (Fig. 2g). A trypan blue dye-exclusion cell viability assay also showed that Jdp2-KO GCPs were more resistant to TCDD treatment (1.0–50 nM) than were WT GCPs (Fig. 2h). These results indicate that Jdp2-KO GCPs have higher capacity in tolerate TCDD-induced stress when compared with WT GCPs.

Increased antioxidation activity in Jdp2-KO GCPs

It is known that TCDD induces neurotoxicity through induction of oxidative stress5153. Therefore, we examined the levels of ROS and GSH/GSSG in WT and Jdp2-KO GCPs. We found that ROS level was 50% lower in Jdp2-KO GCPs than it was in WT GCPs (Fig. 3a). The levels of TCDD-induced ROS were also lower in Jdp2-KO than they were in WT GCPs (Supplementary Fig. 3a). By contrast, both the GSH level (Fig. 3b, Supplementary Fig. 2b) and GSH/GSSG ratio (Fig. 3c) were higher in Jdp2-KO GCPs than WT GCPs, which might contribute to the reduced oxidative stress, in Jdp2-KO GCPs.

Figure 3.

Figure 3

Reduced oxidative stress in Jdp2-KO GCPs. (a) ROS levels in WT and Jdp2-KO GCPs were measured using the ROS-Glo H2O2 assay described in Materials and Methods. The intracellular GSH level (b) and GSH/GSSG ratio (c) were measured and calculated as described in Materials and Methods. (d) ROS levels in WT and Jdp2-KO GCPs in the presence or absence of H2O2 (100 μM) for 2 h before harvesting cells for 24 h. (e) Levels of 8-oxo-dGuo in WT and Jdp2-KO GCPs in the presence or absence of H2O2 (100 μM) for 2 h before harvesting cells for 24 h. (f) MDA levels in the presence or absence of H2O2 (100 µM) for 2 h before the cultivation of cells for 24 h. (g) GSH/GSSG ratio in the presence or absence of H2O2 (100 μM) for 2 h before the cultivation of cells for 24 h. Data are presented as the mean ± SEM (n = 3); *p < 0.05.

To confirm this notion, H2O2-induced oxidative responses, such as the induction of ROS and DNA/lipid oxidation and the consumption of GSH, were compared between WT and Jdp2-KO GCPs. In the presence of 100 μM H2O2, both the basal and H2O2-induced ROS activities were lower in Jdp2-KO than they were in WT GCPs (Fig. 3d). Moreover, both the basal and H2O2-induced 8-oxo-dGuo (an indicator of DNA oxidation; Fig. 3e) and MDA (an indicator of lipid peroxidation; Fig. 3f) levels were consistently lower in Jdp2-KO GCPs than in WT GCPs. By contrast, the ratio of GSH/GSSG was still higher in Jdp2-KO than it was in WT GCPs after H2O2 treatment (Fig. 3g). However, the possibility that the N-acetyl cysteine in the culture medium to avoid the cell damages could enhance the antioxidation response and increase the level of GSH is also possible. Thus, we measured the comparative expression of antioxidation-related transcription factors and enzymes in the presence or absence of NAC. We found that this influence by NAC is not significant and then our condition is better to obtain the better cell survival (Supplementary Fig. 3).

To clarify the mechanism underlying the increased in GSH level in Jdp2-KO GCPs, we examined the expression of the genes involved in GSH biogenesis (Supplementary Fig. 4)8,9. Both RT–PCR and western blot analyses showed that the expression of Slc7a11 and Cd44v was increased in Jdp2-KO GCPs (Fig. 4a,b), which were consistent with the elevation of cystine uptake rate (Fig. 4c) and intracellular cysteine level (Fig. 4d) in Jdp2-KO GCPs. Moreover, the mRNAs of glutathione reductase (Gsr), 6-phosphogluconate dehydrogenase (Pgd), hexokinase 2 (Hk2), and phosphoglycerate dehydrogenase (Phgdh) were upregulated in Jdp2-KO GCPs, this might provide additional NADPH and serine/glycine for GSH anabolism (Supplementary Fig. 4 and Fig. 4a). The levels of expression of Nrf2, Ho1, and Nqo1 proteins were increased by more than twofold, whereas the expression of small Maf proteins (G, F, and K) and Keap-1 were reduced in Jdp2-KO GCPs (Fig. 4b). These results suggest that Jdp2-KO GCPs exhibit an enhanced antioxidative activity.

Figure 4.

Figure 4

Activation of GSH anabolism genes with increased cystine uptake and intracellular cysteine level in Jdp2-KO GCPs. (a) Comparative mRNA expression of GSH production-related genes. Gene expression in WT GCPs was set as 1.0. Gsr; glutathione reductase, Pgd; 6-phosphoglycero dehydrogenase, Hk2; hexokinase 2, Phgdh; phosphoglycerate dehydrogenase, Gclm; glutamate–cysteine ligase complex modifier subunit, Gclc; glutamate–cysteine ligase complex catalytic subunit, G6p; glucose-6-phosphate, Gpx4; glutathione peroxidase 4; 3-Pg; 3-phosphoglycerol; GSH; glutathione-SH. Each value represents the mean ± SEM (n = 3); *p < 0.05. (b) Representative protein expression in the pathways for oxidative stress and antioxidative responses. Aliquots of WT and Jdp2-KO GCPs proteins were examined by western blotting (n = 3; n means three independent samples) after cultivation of these cells for 24 h. The right lane indicates the apparent molecular weight. The relative intensity was calculated relative to β-actin. Cystine uptake (c) and intracellular content of cysteine (d) in WT and Jdp2-KO GCPs proteins were measured as described in Materials and Methods. Each value represents the mean ± SEM (n = 3); *p < 0.05.

Differential regulation of Slc7a11 promoter and ARE activity by Jdp2

To investigate the role of Jdp2 on the expression of Slc7a11 gene, which contains an ARE on the promoter region (Fig. 5a), pGL3-4.7 (Slc7a11 promoter-luciferase reporter plasmid) was transfected into WT and Jdp2-KO GCPs. The results showed that Slac7a11 promoter activity was higher in Jdp2-KO GCPs (Fig. 5b), suggesting that Jdp2 might negatively regulate Slc7a11 promoter activity. Previously, we reported that Jdp2 interacts physically with Nrf2 and MafK to regulate the expression of Ho1 and Nqo1 through AREs in MEFs43. The p21Cip1 can also interact with Nrf2 to increase antioxidative activity54. Therefore, chromatin immunoprecipitation (ChIP)–qPCR experiments were conducted to investigate the recruitment of Nrf2, MafK, p21Cip1, and Jdp2 to the ARE site of Slc7a11 promoter. We found that the binding of Nrf2 and p21Cip1 was increased in Jdp2-KO GCPs (Fig. 5c, left panel). Moreover, the recruitment of the histone acetyltransferase CBP was also increased. By contrast, the binding of Jdp2, MafK, and of the histone deacetylase HDAC3 was enhanced in WT GCPs (Fig. 5c, left panel). The recruitment of these factors to a nonspecific sequence of Slc7a11 promoter was not observed or was indistinguishable between the WT and Jdp2-KO GCPs (Fig. 5c, right panel). Furthermore, reconstituting Jdp2 expression in Jdp2-KO GCPs suppressed ARE activity in a dose-dependent manner (Fig. 5d) and overexpression of p21Cip1 increased ARE activity (Fig. 5e). These results indicate that Nrf2 and p21Cip1 positively but Jdp2 negatively regulate Slc7a11 promoter activity through ARE. Protein expressions of Nrf2, p21Cip1, Cd44v and Slc7a11 were also increased in Jdp2-KO GCPs, compared with those of WT GCPs (Fig. 4b)

Figure 5.

Figure 5

Differential regulation of Slc7a11 promoter activity in WT and Jdp2-KO GCPs by Jdp2, Nrf2, and p21Cip1 through the ARE. (a) Schematic representation of the mouse Slc7a11 promoter and the positions of qPCR primers for the ChIP assay. ARE, antioxidative responsive element, NS, non-specific sequence motifs (as a negative control). (b) Slc7a11 promoter–luciferase activity (pGL3-4.7); mouse xCT–luciferase (ref. 10) was elevated in Jdp2-KO GCPs. Each value represents the mean ± SEM (n = 3); *p < 0.05. (c) ChIP–qPCR analyses were performed on chromatin extracts from WT and Jdp2-KO GCPs using the indicated antibodies and normal IgG (as a negative control) as described in Materials and Methods. Each value represents the mean ± SEM (n = 5); *p < 0.05. (d) and (e) Effects of Jdp2 and p21Cip1 on ARE–luciferase activity. pGL-hQR25-luciferase (100 ng) plus 0–400 ng of pcDNA-Jdp2 (d) or pcDNA-p21Cip1 (e) were transfected into Jdp2-KO GCPs. One day after transfection, cells were collected, and luciferase activity was measured as described in Materials and Methods. Values represent the mean ± SEM. (n = 3). *p < 0.05.

Essential role of p21Cip1 in reducing ROS generation and apoptosis in GCPs

Because Nrf2-p21Cip1 physical interaction can enhance Nrf2-regulated ARE activity54, therefore, we performed reciprocal immunoprecipitation and western blotting experiments to examine the interaction between Nrf2 and p21Cip1 in GCPs. The results showed that the binding between Nrf2 and p21Cip1 was enhanced in Jdp2-KO GCPs (Fig. 6a). The role of the Nrf2–p21Cip1 complex in the enhanced antioxidation capacity of Jdp2-KO GCPs was validated by knockdown experiments. p21Cip1-specific, but not scrambled, siRNAs reduced the expression of p21Cip1 (Supplementary Fig. 5a), the activities of ARE (Fig. 6c) and Slc7a11 promoter (Fig. 6b), cystine uptake (Fig. 6d), and GSH levels (Fig. 6e). The expression of Slc7a11 mRNA was also downregulated by p21Cip1 siRNA (Supplementary Fig. 5b). As a result, the levels of ROS (Fig. 6f) and apoptosis (Fig. 6g) were increased by p21Cip1 knockdown in Jdp2-KO GCPs.

Figure 6.

Figure 6

Role of p21Cip1 in the antioxidative response, which decreases ROS generation and apoptosis in Jdp2- KO GCPs. (a) Increased protein interaction between endogenous p21Cip1 and Nrf2 in Jdp2-KO GCPs. Cell lysates (120 μg) from WT and Jdp2-KO GCPs were immunoprecipitated with anti-p21Cip1 (left panel) or anti-Nrf2 (right panel) antibodies, and the bound proteins were blotted with anti-Nrf2 (left panel) or anti-p21Cip1 (right panel) antibodies as described in Materials and Methods. IgG was used as a negative control. The relative intensity was calculated relative to β-actin. (bg) Effects of siRNA against p21Cip1on the Slc7a11 promoter (b) and ARE (c) activities, cystine uptake (d), intracellular level of GSH (e), ROS production (f) and apoptosis (g). WT and Jdp2-KO GCPs were transfected with 30 pmol of p21Cip1 siRNA (siRNA 1 or 3), Slc7a11 siRNA (#1, #2, and #3), or control scrambled siRNA for 24 h, and the cells were harvested and analyzed as described in Materials and Methods. Values represent the mean ± SEM (n = 3). *p < 0.05. (h) A schematic representation of the interactions between Jdp2, sMaf, Nrf2, and p21Cip1 on the ARE of the Scl7a11 promoter in WT and Jdp2-KO GCPs, which regulates ROS-induced apoptosis of GCPs. In the absence of Jdp2, the endogenous interactions between Nrf2 and p21Cip1 at the ARE of Slc7a11 promoter increased, which increased cystine uptake, intracellular cysteine level, and the GSH/GSSG ratio and led to decreases in ROS and apoptosis in GCPs.

We also used siRNA against the xCT/Slc7a11 transporter gene to repress its expression. Treatment with siRNAs Slc7a11 #1, #2, and #3 reduced the expression of Slc7a11 protein, as examined using the three different antibodies, ARG 57998, bs-6883R, and CST #98051. By contrast, the scrambled siRNA did not reduce the expression of Slc7a11 protein (Supplementary Figure 5c). All three siRNAs against Slc7a11 reduced the uptake of cystine and intracellular GSH levels (Fig. 6d,e) and increased ROS production and apoptosis (Fig. 6f,g) in Jdp2-KO GCPs. These findings suggest that p21Cip1 and Slc7a11 play a key role in protecting GCPs from ROS-induced apoptosis in the absence of Jdp2.

Discussion

Our results showed the different functions of Jdp2 in GCPs in WT and Jdp2-KO mice as the Jdp2-promoter-Cre mice expressed GFP and LacZ in GCPs (Fig. 1). The primary GCPs from Jdp2-KO mice exhibited a weaker staining for Atoh-1 than did WT GCPs (GCPs; Fig. 1c,d,). The levels of some cerebellum-specific markers, such as the zinc finger protein 1 (Zic1)55 and Zic255, were lower in Jdp2-KO GCPs (Supplementary Fig. 1), suggesting that Jdp2 might be required to control these GCP-specific genes transcriptionally. Because both Zic1 and Zic2 are required for the development of the cerebellum55, their downregulation in Jdp2-KO GCPs might be consistent with a cell proliferation that may result in the decrease of Atoh-1-positive GCPs during the process of development (Fig. 1a‒d). In contrast, the levels of genes encoding neural factors, such as the neurotrophic receptor tyrosine kinase 3 (Ntrk3), the nerve growth factor (Ngf), the brain-derived neurotrophic factor (Bdnf), the GABA type A receptor alpha 1 subunit (Gabra1), the GABA type A receptor beta 2 subunit (Gabrb2), and the glycine receptor alpha 2 (Glra2) genes, were higher in Jdp2-KO GCPs compared with WT GCPs (Supplementary Fig. 1). Together, these findings suggest that Jdp2 is a cerebellar granule cell marker that blocks the neural differentiation of GCPs at the P5‒P6 stage. Here, we showed that Jdp2 contributes to programmed cell death and is crucial for proper cerebellar development (Fig. 6f–h)56.

In the absence of Jdp2, p21Cip1 enhances ARE activity in a dose-dependent manner coupled to Nrf2, to increase the anti-oxidation response (Fig. 5e). In contrast, the Nrf2–p21Cip1 axis-mediated ARE activity is suppressed in the presence of Jdp2 (Figs. 5d and 6c). The negative role of Jdp2 in ARE activation is illustrated by the decreased promoter activity and expression of Slc7a11 observed in WT GCPs (Figs. 4b and 6b), which is consistent with the increased recruitment of HDAC3 to the ARE of the Slc7a11 promoter (Fig. 5c). In contrast, CBP is recruited to the ARE in the absence of Jdp2 (Fig. 5c), which might contribute to promoter activation and expression of Slc7a11 in Jdp2-KO GCPs (Figs. 4b and 5c). In the absence of Jdp2, the elevated expression of the Slc7a11-CD44v transporter could lead to increased cystine uptake, intracellular cysteine, and GSH accumulation (Fig. 3b,c; Fig. 4c,d). Our results indicate that Jdp2 is a repressor of ARE activity in GCPs, that is distinct from that of MEFs. In MEFs, Jdp2 interacts with the Nrf2–MafK complex to upregulate the ARE response, as reported previously43.

The Slc7a11 protein appears at two molecular weights, 55 kDa and 35 kDa, although no studies have reported any relationship between the two forms. Given this difference in molecular weight, we used three different commercially available antibodies in our study. The Sc7a11 protein is ubiquitinated in vitro, and this form migrates to the positions with apparent molecular weights of 55–60 kDa and >80 kDa in the human 293 cell line17. Therefore, we used an immunoprecipitation–western blot (IP‒WB) method to examine whether the upper 55 kDa form is the ubiquitinated protein. We found that the two antibodies ARG 57998 and bs-6883R, precipitated the 55 kDa protein, and that the CST #98051 antibody precipitated only the 35 kDa protein band from mouse GCPs (Supplementary Figs. 6a and 7).

In an attempt to characterize both proteins, the immunoprecipitated 55 kDa protein was first trapped by the MBS04751086 antibody. We then found that the 35 kDa protein, which was trapped by CST#98051, was included in the immunoprecipitates of anti-55 kDa ARG 57998. The antibodies against the 55 kDa protein precipitated the 35 kDa protein, but only the 55 kDa protein was ubiquitinated (Supplementary Figs. 6b and 7). In addition, the levels of both the 55 kDa and 35 kDa proteins were decreased after treatment of mouse GCPs with an siRNA against Slc7a11 (Supplementary Fig. 5c). These findings suggest that both the 55 kDa and the 35 kDa proteins are the Slc7a11 protein and that the 55 kDa protein is ubiquitinated.

There are several possible explanations for the opposite function observed for Jdp2 in GCPs and MEFs. First, the brain is more susceptible to oxidative stress than are other organs, and the cerebellar cell layers are particularly vulnerable to oxidative stress57. Thus, anti-oxidation molecules that control ROS homeostasis, including Jdp2, might be dysfunctional or reversed detecting during cerebellar development. Second, Nrf2-regulated GSH might be a major source of the anti-oxidation response detected during cerebellar development. However, GSH is increased in the brain at P12, but not at P532,33. Thus, WT GCPs at P5 might exhibit lower Nrf2-mediated anti-oxidation activity. Third, the expression of Nrf2 was higher in Jdp2-KO GCPs than it was in WT GCPs; this is not the case in MEFs (see Fig. 4b, ref. 43). Fourth, the expression of small Mafs, including MafK, is higher in WT GCPs vs. Jdp2-KO GCPs, which is reversed in MEFs43. According to the results of ChIP and immunoprecipitation-western blotting assays performed in WT GCPs, Jdp2 is associated with Nrf2 or with MafK to reduce the occupancy of the Nrf2‒MafK activation complex on ARE; however, in the case of Jdp2-KO GCP2, only Nrf2 is associated with p21Cip1 to enhance ARE activity. It might be different in terms of function between p21Cip1 and MafK, which can couple with the same Nrf2, in GCPs and MEFs. Fifth, Jdp2 acts as a negative repressor of the ARE response in WT GCPs, whereas it functions as an activator in WT-MEFs because of its interaction with Nrf2‒MafK vs. Nrf2‒p21Cip1. Finally, ARE is mainly produced by the activation of Slc7a11 in GCPs, to regulate GSH levels; however, in MEFs, the activation of Ho1, Nqo1, GSH is also detected. Although we do not know exactly why Jdp2 acts differently in GCPs and MEFs, ROS balance or Redox balance might act as a threshold factor. Here, we presented evidence that Jdp2 differs between these cell types. Therefore, different cell types, in this case GCPs and MEFs, may have different anti-oxidation mechanisms to regulate ROS homeostasis using Jdp2 as a modulator.

The interaction between Nrf2 and p21Cip1 might have provided maximal anti-oxidation ARE activity in Jdp2-KO GCPs because the formation of the Nrf2‒p21Cip1 complex was decreased in WT GCPs (Fig. 6a). Chen et al. reported that Nrf2 and p21Cip1 interact with each other, leading to the exclusion of the binding of Keap-1 to Nrf2 and an increase in Nrf2 protein stability and anti-oxidative responses54. Our sequential immunoprecipitation and western blotting experiments confirmed that the endogenous interaction between Nrf2 and p21Cip1 was stronger in Jdp2-KO GCPs than it was in WT GCPs, suggesting that the expression of Jdp2 in WT GCPs might repress the formation of the Nrf2‒p21Cip1 complex, although p21Cip1 was still present in the WT GCPs (Fig. 6h). Furthermore, the levels of both Nrf2 and p21Cip1 were increased in the absence of Jdp2 (Fig. 4b). As a result, the endogenous ROS level was reduced in Jdp2-KO GCPs, which might have enhanced their tolerance toward oxidative-stress-induced apoptosis (Fig. 2g).

In fact, the expression of apoptotic proteins, such as cytochrome C, Bad, Bax, and the cleaved caspases 3 and 8, was reduced in Jdp2-KO GCPs. The neuroprotection mediated by the insulin-like growth factor-1 and other neurotrophic factors is associated with the downregulation of Bax and Bad and with the induction of anti-apoptotic members of the Bcl-2 family58. p21Cip1 is a negative regulator of both p53-dependent and p53-independent apoptosis59. Here, we found that p21Cip1 was required for the prevention of ROS-induced cell death. Therefore, p21Cip1 plays a critical role in the Nrf2-regulated expression of Slac7a11 and GSH production, thus preventing ROS-mediated apoptosis60. This is consistent with reports showing that the combined inhibition of GSH and Slc7a11 synergistically enhances cell death61,62. It is also possible that Nrf2 targets different sets of oxidation-responsive genes by differentially interacting with Jdp2 or p21Cip1. In this regard, we found that Gsr and Pgd were upregulated in Jdp2-KO CGPs compared with WT GCPs (Fig. 4a). Moreover, the expression of Gsr21,62 and Pgd63 is reportedly upregulated by Nrf2. Together, these results imply that increased levels of the Nrf2‒p21Cip1 complex in the absence of Jdp2 may contribute to the upregulation of Gsr and Pgd.

In summary, we have demonstrated that the Nrf2‒p21Cip1 and Nrf2‒Jdp2 complexes differentially regulate the expression of Slc7a11 to control ROS homeostasis and ROS-induced cell death in GCPs (Fig. 6h). The balance between the static amounts of Jdp2 and p21Cip1 and their interplay with Nrf2 in GCPs are critical for the ROS-induced neural cell death that occurs during cerebellar development. Further work on ROS balance mediated by Jdp2, Nrf2, and p21Cip1 in the control of other oxidative-stress-responsive genes, such as Gsr, Pdh, and Cd44v, is required to elucidate the precise developmental regulation of the cerebellum and of Purkinje cells.

Materials and Methods

Animals and cells

The animal welfare guidelines used for the care and use of laboratory animals were those published by the Animal Care Committee of the RIKEN BioResource Center (BRC) in Japan, the National Laboratory Animal Center (NLAC), and Kaohsiung Medical University in Taiwan. All animal experiments were performed in accordance with these approved guidelines. Mouse embryonic fibroblasts (MEFs) and 293 T cells were prepared as described43,47,48.

Plasmids

The pcDNA-Jdp2, and pcDNA-p21Cip1 were obtained from RIKEN BRC as described previously43,48,64, amplified by polymerase chain reaction (PCR) and cloned into a pcDNA4 or a pcDNA3 vector using the respective restriction sites.

Preparation and culture of primary GCPs

GCPs were prepared from the developing cerebellum as described previously65,66. P5‒P7 mice were decapitated, and their cerebellums were placed in cold Hanks glucose medium (Invitrogen-GIBCO, Thermo Fisher Scientific, Waltham, MA, USA) with Earle’s balanced salt solution (EBSS) containing papain (20 U/ml; Worthington, Lakewood, NJ, USA; LK003153), with 1 mM l-cysteine, 0.5 mM ethylenediaminetetraacetic acid (EDTA), and 0.05% DNase I at 37 °C for 15 min. Digestion was terminated by adding EBSS containing 0.2% ovomucoid (OM) and 0.1% bovine serum albumin (BSA). The tissues were pipetted repeatedly to obtain a suspension of single cells and then centrifuged at 200 g for 5 min. For discontinuous density-gradient centrifugation, the cell pellets were resuspended in 3 ml EBSS, 5 ml of BSA–OM inhibitor solution was added carefully onto the upper layer, and the cells were centrifuged at 70 g for 6 min65.

The cell pellets were resuspended in granule cell culture medium and incubated for 24 h in Neurobasal A medium containing 2% B-27 supplement, 100 U/ml penicillin, 100 μg/ml streptomycin, 2 mM glutamine, 5 μg/ml insulin, 100 μg/ml apotransferrin, and 16 μg/ml putrescine (all from Invitrogen-GIBCO) plus 1 mM sodium pyruvate, 100 μg/ml BSA, 30 μM N-acetyl cysteine (NAC), 62 ng/ml progesterone, 40 ng/ml sodium selenite, and 5 ng/ml epidermal growth factor (all from Merck, Darmstadt, Germany). The cells were then seeded into tissue culture dishes precoated with 50 μg/ml or 1.0 mg/ml poly-d-lysine (PDL; BD Biosciences, Billerica, MA, USA) and cultured for 1 day before the analysis. In some experiments, the cells were plated into eight-well cell culture dishes precoated with 1.0 mg/ml PDL66. Chemicals used for cell treatments, including 2,3,7,8-tertachlorodibenzo-p-dioxin (TCDD) or H2O2, were from Merck. The cells were incubated with TCDD or H2O2 for 2–24 h or 2 h, respectively, in culture medium without NAC. The viability of cells was determined using Trypan blue staining and calculated as described elsewhere48,64.

Immunohistochemistry

For immunohistochemical staining, dewaxed slides were incubated with Peroxidase Block (3% H2O2) for 20 min and heated at 95 °C for 20 min in sodium citrate buffer (pH 6.0). After washing and blocking, the slides were incubated with the indicated antibodies against LacZ, caspase 3, Slc7a11, or Atoh-1 for 2 h and then incubated with the indicated mouse/rabbit probe horseradish peroxidase (HRP)-conjugated antibodies (BioTnA, Kaohsiung, Taiwan) for 30 min. After washing, the chromogen was developed by 3,3′-diaminobenzidine staining and the samples were counterstained with haematoxylin. The slides were rinsed with H2O and covered with resin-based mounting medium (BioTnA) after dehydration. Histopathological analysis was performed by the RIKEN BRC Experimental Animal Division in Japan and the NLAC, Taiwan. Tissue HE-staining was visualized using an Olympus CKX41 microscope (Olympus, Tokyo, Japan), and images were scanned and saved using a TissueFax microscope (TissueGnostics, Vienna, Austria).

Immunocytochemistry

The tissue samples were stained with anti-LacZ, anti-caspase 3, or anti-Slc7a11 as described elsewhere67,68. GCPs were fixed in 4% formaldehyde for 10 min, washed with PBS, incubated with a blocking solution containing 10% fetal bovine serum and 0.1% Triton X-100 in PBS for 15 min to block non-specific binding sites, and incubated overnight with the anti-Atoh1 (1:400; Chemicon; AB5692), anti-LacZ antibody, or anti-Slc7a11 primary antibodies. After washing with PBS-Tween, the cells were incubated for 1.5 h with Alexa Fluor594-labeled goat anti-rabbit IgG (Life Technologies, Grand Island, NY, USA; A11037) and processed using 4′,6-diamino-2-phenylindole to visualize cell nuclei (1:3000; 5 mg/ml stock in dimethyl sulfoxide, Merck). Cells were mounted on slides using ProLong Gold Antifade Mountant (Molecular Probes, Thermo Fisher Scientific, Waltham, MA, USA; P36934), and cell immunofluorescence was visualized using an Olympus FV1000 confocal laser scanning microscope.

Immunoprecipitation and western blotting

Immunoprecipitation and western blotting assays were conducted as described previously48,64. Briefly, primary cultured GCPs were homogenized in ice-cold N-PER Neuronal Protein Extraction Reagent (Thermo Fisher Scientific; #87792) according to the manufacturer’s instruction in the presence of Halt Phosphatase Inhibitor Cocktail (Thermo Fisher Scientific; #78440). Protein lysate aliquots (20 μg) were separated in NuPAGE 4‒12% Bis-Tris protein gels in 1.5 mm, 15-well dishes (Thermo Fisher Scientific; NP0335BOX) and transferred to 0.45 μm Immobilon-P transfer polyvinylidene difluoride (PVDF) membranes (Merck; IPVH00010) for 1 h at 100 V (fixed) at 10 °C using a TE22 Hoefer transfer system. Blots were stained with Ponceau S (Merck, P17170) to monitor the transferred protein amounts. The PVDF membranes were then probed with the primary and secondary antibodies according to the manufacture’s protocol (Research Resource Identifiers (https://www.rrids.org/). Bound antibodies were detected with HRP-labelled secondary antibodies using ImmobilonTM western chemiluminescent HRP substrate (EMD Millipore Co., Billerica, MA, USA; WBKL S0050) or SuperSignalTM Western Plus, Chemiluminescent substrate (Thermo Scientific; #34579). Positive signals were analyzed using a ChemiDoc XRS_Plus instrument (Bio-Rad, Hercules, CA, USA). Immunoprecipitation was performed using antibody-coated protein-A/G beads, as described previously69. A summary of the antibodies is listed in Supplementary Table 1.

Analysis of 7,8-dihydro-8-oxo-27-deoxyguanosine (8-oxo-dGuo), GSH, malonaldehyde (MDA), and cellular ROS

The concentration of 8-oxo-dGuo was measured using liquid chromatography–mass spectrometry, as described previously70,71. Total GSH and GSSG concentrations (mmol/mg protein) were measured using a GSH assay kit (Cayman Chemical Co.; Ann Arbor, MI, USA; 703002) and normalized against the protein concentration. The malondialdehyde (MDA) level was used as an indicator of lipid peroxidation was measured using the method of Uchiyama and Mihara72. To measure the intracellular ROS level, the ROS-Glo H2O2 assay (Promega) was used. After 2 h of treatment with H2O2 before cultivation for 24 h, the harvested cells were washed twice with Hank’s balanced salt solution (GIBCO), incubated with the ROS-Glo Detection Solution for 20 min, and the luminescence was measured using a GloMax luminometer (Promega).

Cystine uptake

Following the basic protocol described by Bannai and Kitamura73, the cells were washed three times with prewarmed Na+-free PBS+G [10 mM PBS (137 mM choline chloride, 3 mM KCl), pH 7.4, containing 0.01% CaCl2, 0.01% MgCl2, and 0.1% glucose)] and then incubated in prewarmed uptake medium (0.5 ml) at 37 °C for 30 min. The uptake medium contained 20 μM cystine plus [14C]-cystine (0.2 μCi/ml) in Na+-free PBS (+) G. In some experiments, siRNA against Slc7a11, siRNA against p21Cip1, or scrambled siRNAs were added at the indicated concentration 24 h before labelling and the cells were washed three times with prewarmed buffer. Uptake was terminated by rapidly rinsing the cells three times with ice-cold PBS, and the radioactivity in the cells was counted using a liquid scintillation counter as described elsewhere73.

Measurement of intracellular cysteine

We followed to the basic protocol as described by Bannai’s group73,74. Briefly, cells were washed with PBS(+)G three times,and then incubated with 8 mM monobromobimane in 50 mM N-ethylmorpholine, pH 8.0 (100 μl), and 50 mM PBS(+)G containing 0.01% CaCl2, 0.01% MgCl2 and 0.1% glucose (100 μl), in the dark at room temperature for 30 min. Then, ten μl of 100% trichloroacetic acid was added to harvest the cells. The protein precipitate was removed by centrifugation at 3000 x g for 5 min, and aliquots were analyzed for cysteine-bimane adduct using high performance liquid chromatography (HPLC). The HPLC separation was performed on a steel column (4.6 × 100 mm) packed with 3-μm octadecylsilyl silica as reversed-phase. The fluorescence at 480 nm was monitored with the excitation wavelength at 394 nm. The materials were eluted with 9% (v/v) acetonitrile in 0.25% (v/v) acetic acid, pH 3.7 for 8 min from the column, and then 75% (v/v) acetonitrile in water for 5 min was run. The flow was done at 1 ml/min throughout the process73,74.

Assays to measure apoptosis, caspase-Glo 3/7 activities, and annexin V level

The apoptotic cell population was measured using a DeadEnd Colorimetric TUNEL System (Promega) following the manufacturer’s protocol. Briefly, the cells were seeded at 5 × 105 per well in six-well chamber slides and then fixed with 4% formaldehyde. The permeabilized cells were labelled with a terminal-deoxy-transferase reaction mixture for 1 h at 37 °C, the reaction was terminated by washing with 2× SSC buffer (0.3 M NaCl, 30 mM sodium citrate), and the cells were treated with streptavidin–HRP solution for 30 min at room temperature as indicated. The brown coloration developed by the diaminobenzene chromogen (Dako-Agilent, Santa Clara, CA, USA) was visualized. The apoptotic index was calculated as the percentage of positive cells in ≥500 cells at 400× magnification. Cell death was also determined by staining with Annexin V–fluorescein isothiocyanate and propidium iodide (PI) (Abcam, Cambridge, MA, USA; 14085). The cells were treated with the binding buffer with Annexin V and PI for 5 min in the dark and fixed in formaldehyde (4%) for 10 min, and the signals were measured on a FACSCalibur flow cytometer (BD Biosciences). The activities of caspase 3 and caspase 7 were measured using Caspase-Glo 3/7 Assay kits (Promega). The relative luminescence units were measured using a GloMax Luminometer (Promega).

Statistical analysis

Quantitative variables are presented as the mean ± standard error (SEM) from triplicate experiments and additional replicates as indicated. The significance of differences was determined using Student t tests and one-way or two-way analysis of variance followed by Turkey’s test using GraphPad Prism 7.0. Differences with a p value < 0.05 were considered to be significant.

Ethical approval and consent to participate

Animal experiments were approved by the Ethical Committee of the Kaohsiung Medical University, the National Laboratory Animal Center in Taiwan, and RIKEN BioResource Center in Japan and were conducted in accordance with their guidelines.

Consent for publication

All authors have read the manuscript and agreed to its content. They are accountable for all aspects of the accuracy and integrity of the manuscript. The article is original, has not already been published in a journal, and is not currently under consideration by another journal.

Supplementary information

Acknowledgements

We thank L.C. Wang and T. Sato for the CRL-2535 mouse astrocyte cells and mouse xCT–luciferase pGL3–4.7. We also thank H.C. Huang and H.Y. Tseng of Welgene Biotech for RNA sequencing work; S. Kishikawa and K. Nakade for animals, cells, and RNA experiments; and the National Laboratory Animal Center for technical support in histology-related experiments, contract breeding, and testing services. We also thank the Center for Research Resources and Development of Kaohsiung Medical University for providing the Olympus FV1000 and TissueFAXS systems. This work was supported by grants from the Ministry of Science and Technology (MOST 106-2320-B-037-001-MY3, MOST 107-2320-B-037-026, MOST 107-2314-B-037-085, MOST 108-2320-B-037-005), the National Health Research Institutes (NHRI-EX108-10720SI), and Kaohsiung Medical University Research Center Grant (KMU-TC108A02).

Author contributions

C.C.K., K.W., W.H.L., J.B.P., K.K., C.S.L., and K.KY. performed the experiments. H.M., Y.N., S.S., D.C.W., and K.N. provided the reagents and vectors. C.C.K., K.W., W.H.L., J.B.P., M.N., S.C.T., Y.L.L. R.E., C.J.K., and K.H.L. bred and genotyped the mice. C.C.K., K.W., W.H.L., J.B.P., S.C.T., C.J.K., K.H.L., Y.C.L., M.N., S.S., D.C.W., and K.N. interpreted the data and helped draft the manuscript. C.C.K., K.W., R.E., C.S.L., and K.K.Y. designed and coordinated the study, and wrote the manuscript. All authors read and approved the final version of the manuscript.

Data availability

All relevant data are available on upon reasonable request from the authors. RNA sequencing data were deposited in the NCBI Bioproject Database (http://www.ncbi.nlm.nih.gov/bioproject) with the accession numbers SUB3541857, SUB3541902, SUB3541913, and SUB3541945. A reporting summary for this article is available as a Supplementary Information File).

Competing interests

The authors declare no competing interests.

Footnotes

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

These authors contributed equally: Chia-Chen Ku and Kenly Wuputra.

These authors jointly supervised this work: Chang-Shen Lin and Kazunari K. Yokoyama.

Hiroyuki Miyoshi is deceased

Change history

6/12/2020

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Contributor Information

Chang-Shen Lin, Email: changshen.lin@gmail.com.

Kazunari K. Yokoyama, Email: kazu@kmu.edu.tw

Supplementary information

is available for this paper at 10.1038/s41598-020-61692-x.

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Data Availability Statement

All relevant data are available on upon reasonable request from the authors. RNA sequencing data were deposited in the NCBI Bioproject Database (http://www.ncbi.nlm.nih.gov/bioproject) with the accession numbers SUB3541857, SUB3541902, SUB3541913, and SUB3541945. A reporting summary for this article is available as a Supplementary Information File).


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