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. 2004;26(3):179–183. doi: 10.1023/B:BILE.0000013708.65032.f1

One-Tube Nested RT-PCR Enabled by Using a Plastic Film and its Application for the Rapid Detection of SARS-Virus

Sheng-Ce Tao 1,2, Di Jiang 3, Hong-Li Lu 3, Wan-Li Xing 1,3, Yu-Xiang Zhou 1,2,3, Jing Cheng 2,3,
PMCID: PMC7087936  PMID: 15049359

Abstract

A general strategy based on the use of a plastic film that allows reverse transcription and nested-PCR in a single closed-tube has been developed. The reaction mixture for the second PCR amplification is quarantined in the cap of the reaction tube during the first round amplification by a piece of plastic film, and later introduced into the PCR amplicons from the first round reaction by centrifugation without opening the reaction tube. The main advantages of our method are its high sensitivity, specificity, simplicity, cost effectiveness, low risk of contamination and the ease in establishment of conditions for nested-PCR. The method has been successfully applied to the detection of the genomic RNA from SARS-CoV, the detection limit of this method is comparable to that of the conventional two-tube nested PCR system. This method could be easily adapted to the detection of other targets.

Keywords: one-tube nested PCR, plastic film, SRAS-virus

References

  1. Abath FG, Melo FL, Werkhauser RP, Montenegro L, Montenegro R, Schindler HC. Single-tube nested PCR using immobilized internal primers. Biotechniques. 2002;33:1210–1212. doi: 10.2144/02336bm05. [DOI] [PubMed] [Google Scholar]
  2. Dupin N, Buffet M, Marcelin AG, Lamotte C, Gorin I, Ait-Arkoub Z, Treluyer JM, Bui P, Calvez V, Peytavin G. HIV and antiretroviral drug distribution in plasma and fat tissue of HIVinfected patients with lipodystrophy. AIDS. 2002;16:2419–2424. doi: 10.1097/00002030-200212060-00006. [DOI] [PubMed] [Google Scholar]
  3. Garson JA, Tuke PW, Makris M, Briggs M, Machin SJ, Preston FE, Tedder RS. Demonstration of viraemia patterns in haemophiliacs treated with hepatitis-C-virus-contaminated factor VIII concentrates. Lancet. 1990;336:1022–1025. doi: 10.1016/0140-6736(90)92487-3. [DOI] [PubMed] [Google Scholar]
  4. Llop P, Bonaterra A, Penalver J, Lopez MM. Development of a highly sensitive nested-PCR procedure using a single closed tube for detection of Erwinia amylovora in asymptomatic plant material. Appl. Environ. Microbiol. 2000;66:2071–2078. doi: 10.1128/aem.66.5.2071-2078.2000. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Mathis A, Weber R, Kuster H, Speich R. Simplified sample processing combined with a sensitive one-tube nested PCR assay for detection of Pneumocystis carinii in respiratory specimens. J. Clin. Microbiol. 1997;35:1691–1695. doi: 10.1128/jcm.35.7.1691-1695.1997. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Olmos A, Cambra M, Esteban O, Gorris MT, Terrada E. New device and method for capture, reverse transcription and nested PCR in a single closed-tube. Nucl. Acids Res. 1997;27:1564–1565. doi: 10.1093/nar/27.6.1564. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Pignon JM, Henni T, Amselem S, Vidaud M, Duquesnoy P, Vernant JP, Kuentz M, Cordonnier C, Rochant H, Goossens M. Frequent detection of minimal residual disease by use of the polymerase chain reaction in long-term survivors after bone marrow transplantation for chronic myeloid leukemia. Leukemia. 1990;4:83–86. [PubMed] [Google Scholar]
  8. Porter-Jordan K, Rosenberg EI, Keiser JF, Gross JD, Ross AM, Nasim S, Garrett CT. Nested polymerase chain reaction assay for the detection of cytomegalovirus overcomes false positives caused by contamination with fragmented DNA. J. Med. Virol. 1990;30:85–91. doi: 10.1002/jmv.1890300202. [DOI] [PubMed] [Google Scholar]
  9. Tanji Y, Mizoguchi K, Akitsu T, Morita M, Hori K, Unno H. Fate of coliphage in waste water treatment process and detection of phages carrying the Shiga toxin type 2 gene. Water Sci. Technol. 2002;46:285–289. [PubMed] [Google Scholar]
  10. Wolff C, Hornschemeyer D, Wolff D, Kleesiek K. Single-tube nested PCR with room-temperature-stable reagents. PCR Meth. Appl. 1995;4:376–379. doi: 10.1101/gr.4.6.376. [DOI] [PubMed] [Google Scholar]

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