Abstract
A lead compound obtained from a high volume human non-pancreatic secretory phospholipase A2 (hnps-PLA2) screen has been developed into a potent inhibitor using detailed structural knowledge of inhibitor binding to the enzyme active site. Four crystal structures of hnps-PLA2 complexed with a series of increasingly potent indole inhibitors were determined and used as the structural basis for both understanding this binding and providing valuable insights for further development. The application of structure-based drug design has made possible improvements in the binding of this screening lead to the enzyme by nearly three orders of magnitude. Furthermore, the optimized structure (LY311727) displayed 1,500-fold selectivity when assayed against porcine pancreatic s-PLA2.
References
- 1.Green J-L. Circulating phospholipase A2 activity associated with sepsis and septic shock is indistinguishable from that associated with rheumatoid arthritis. Inflammation. 1991;15:355–367. doi: 10.1007/BF00917352. [DOI] [PubMed] [Google Scholar]
- 2.Kramer RM. Structure & properties of a human non-pancreatic phospholipase A2. J.biol. Chem. 1989;264:5768–5775. [PubMed] [Google Scholar]
- 3.Dennis EA, Rhee SG, Billah MM, Hannun YA. Role of phospholipases in generating lipid second messengers in signal transduction. FASEB J. 1991;5:2068–2077. doi: 10.1096/fasebj.5.7.1901288. [DOI] [PubMed] [Google Scholar]
- 4.Pruzanski W, Vadas P, Browing J. Secretory non-pancreatic group II phospholipase A2: role in physiologic and inflammatory processes. J. lipid Med. 1993;8:161–167. [PubMed] [Google Scholar]
- 5.Santos AA. Are events after endotoxemia related to circulating phospholipase A2? Ann. Surg. 1994;219:183–192. doi: 10.1097/00000658-199402000-00010. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Vadas P, Pruzanski W. Induction of group II phospholipase A2 expression and pathogenesis of the sepsis syndrome. Circ. Shock. 1993;39:160–167. [PubMed] [Google Scholar]
- 7.Baldwin JJ. Thynopyran-2-sulfonamides: novel topically active carbonic anhydrase inhibitors for the treatment of glaucoma. J. med. Chem. 1989;32:2510–2513. doi: 10.1021/jm00132a003. [DOI] [PubMed] [Google Scholar]
- 8.Shoichet BK, Stroud RM, Santi DV, Kuntz ID, Perry KM. Structure-based discovery of inhibitors of thymidylate synthase. Science. 1993;259:1445–1450. doi: 10.1126/science.8451640. [DOI] [PubMed] [Google Scholar]
- 9.Erickson J. Design, activity, and 2.8 Å crystal structure of a C2 symmetric inhibitor complexed to HIV-1 protease. Science. 1990;249:527–533. doi: 10.1126/science.2200122. [DOI] [PubMed] [Google Scholar]
- 10.Lam PYS. Rational design of potent, bioavailable, nonpeptide cyclic ureas as HIV protease inhibitors. Science. 1994;263:380–384. doi: 10.1126/science.8278812. [DOI] [PubMed] [Google Scholar]
- 11.Ealick SE. Application of crystallographic and modelling methods in the design of purine nucleoside phosphorylase inhibitors. Proc. Natn. Acad. Sci U.S.A. 1991;88:11540–111544. doi: 10.1073/pnas.88.24.11540. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12.von Itzstein M. Rational design of potent sialidase-based inhibitors of influenza virus replication. Nature. 1993;363:418–423. doi: 10.1038/363418a0. [DOI] [PubMed] [Google Scholar]
- 13.Warner P, Green RC, Gomes B, Strimpler AM. Non-peptide inhibitors of human leukocyte elastase. 1. The design and synthesis of pyridone-containing inhibitors. J. med. Chem. 1994;37:3090–3099. doi: 10.1021/jm00045a014. [DOI] [PubMed] [Google Scholar]
- 14.Beaton HG. Discovery of new non-phospholipid inhibitors of the secretory phospholipases A2. J. med. Chem. 1994;37:557–559. doi: 10.1021/jm00031a001. [DOI] [PubMed] [Google Scholar]
- 15.Jain MK. Fatty acid amides: scooting mode-based discovery of tight-binding competitive inhibitors of secreted phospholipases A2. J. med. Chem. 1992;35:3584–3586. doi: 10.1021/jm00097a018. [DOI] [PubMed] [Google Scholar]
- 16.Pisabarro MT. Rational modification of human synovial fluid phospholipase A2 inhibitors. J med. Chem. 1994;37:337–341. doi: 10.1021/jm00029a004. [DOI] [PubMed] [Google Scholar]
- 17.Wery J-P. Structure of recombinant human rheumatoid arthritic synovial fluid phopholipase A2 at 2.2 Å resolution. Nature. 1991;352:79–82. doi: 10.1038/352079a0. [DOI] [PubMed] [Google Scholar]
- 18.Scott DL. Structures of free and inhibited human secretory phospholipase A2 from inflammatory exudate. Science. 1991;254:1007–1010. doi: 10.1126/science.1948070. [DOI] [PubMed] [Google Scholar]
- 19.White SP, Scott DL, Otwinski Z, Gelb MH, Sigler PB. Crystal structure of cobra-venom phospholipase 'A2 in a complex with a transition-state analogue. Science. 1990;250:1560–1563. doi: 10.1126/science.2274787. [DOI] [PubMed] [Google Scholar]
- 20.Scott DL, Otwinowski Z, Gelb MH, Sigler PB. Crystal structure of bee venom phospholpase A2 in a complex with a transition-state analogue. Science. 1990;250:1563–1566. doi: 10.1126/science.2274788. [DOI] [PubMed] [Google Scholar]
- 21.Thunnissen MMGM. X-ray structure of phospholipase A2 complexed with a substrate-derived inhibitor. Nature. 1990;347:689–691. doi: 10.1038/347689a0. [DOI] [PubMed] [Google Scholar]
- 22.Kaplan L, Weiss J, Elsback P. Low concentrations ofindomethacin inhibit phospholipase A2 of rabbit polymorphonuclear leukocytes. Proc. natn. Acad. Sci. U.S.A. 1978;75:2955–2958. doi: 10.1073/pnas.75.6.2955. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.Lobo IB, Hoult JRS. Groups I,II and III extracellular phospholipases A2: Selective inhibition of group II enzymes by indomethacin but not other NSAIDs. Agents Actions. 1994;41:111–113. doi: 10.1007/BF01986409. [DOI] [PubMed] [Google Scholar]
- 24.Reynolds LJ, Hughes LL, Dennis EA. Analysis of human synovial fluid phospholipase A2 on short chain phosphatidylcholine-mixed micelles: development of a spectrophotomertic assay suitable for a microtiterplate reader. Analyt. Biochem. 1992;204:190–197. doi: 10.1016/0003-2697(92)90160-9. [DOI] [PubMed] [Google Scholar]
- 25.Snyder DW, Sommers CD, Bobbitt JL, Mihelich ED. Characterization of the contractile effects of human recombinant non-pancreatic secretory phopholipase A2 and other PLA2s on guinea pig lung pleural strips. J. Pharmac. exp. Ther. 1993;266:1147–1155. [PubMed] [Google Scholar]
- 26.Yu L, Dennis EA. Critical role of a hydrogen bond in the interaction of phospholipase A2 with transition-state and substrate analogues. Proc. natn. Acad. Sci. U.S.A. 1991;88:9325–9329. doi: 10.1073/pnas.88.20.9325. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Dennis EA. Diversity of group types, regulation, and function of phospholipase A2. J. biol. Chem. 1994;269:13057–13060. [PubMed] [Google Scholar]
- 28.Shibata A. Diffraction data collection with R-AXIS II, an X-ray detecting system using imaging plate. Rigaku J. 1990;7:28–32. [Google Scholar]
- 29.Brunger A. X-PLOR version 3.1 A system for crystallography and NMR. 1992. [Google Scholar]
- 30.Hendrickson WA, Konnert JH. Biomolecular Structure, Function, Conformation and Evolution. 1981. Stereochemically restrained least-squares refinement; pp. 43–57. [Google Scholar]
- 31.Jones TA. A graphics model building and refinement system for macromolecules. J. appl. Crystallogr. 1978;11:268–272. doi: 10.1107/S0021889878013308. [DOI] [Google Scholar]