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. 2020 Mar 20;9:e54136. doi: 10.7554/eLife.54136

Table 2. Summary of interaction group 1 variants.

Tier Core SNPs Accessory genes
a-T1 520 SNPs (359 Syn, 137 NonSyn) in 21 genes of 8 blocks, 14 genes encoding lateral flagellar 66 genes in 10 blocks, 11 COG M genes, 5 T2SS genes
a-T2 121 SNPs (68 Syn, 43 NonSyn) in 18 genes of 10 blocks, 10 genes encoding lateral flagellar 22 genes in 10 blocks, 2 COG M genes, 3 T2SS genes
a-T3 190 SNPs (137 Syn, 38 NonSyn) in 44 genes of 18 blocks, 17 genes encoding lateral flagellar 46 genes in 13 blocks, 5 COG M genes, 3 COG NU genes, 4 T2SS genes
b-T1 12 SNPs (5 Syn, 2 NonSyn) lin 3 genes of 2 blocks, 2 genes encoding lateral flagellar 33 genes in 2 blocks, 12 COG M genes
b-T2 25 SNPs (15 Syn, 10 NonSyn) in 3 genes of 1 block encoding lateral flagellar 8 genes in 2 blocks, 1 COG M gene
d-T1 5 SNPs (3 syn, 2 nonsyn) in 1 gene encoding transmembrane 31 genes in 5 blocks, 23 genes (1 block) encoding T6SS
d-T2 0 SNP 14 genes in 4 blocks, 8 genes (1 block) encoding cellulose synthase
O-1 36 SNPs (28 Syn, 10 NonSyn) in 3 genes of 2 blocks, 2 genes encoding lateral flagellar, 1 TonB gene 6 genes in 4 blocks, 1 COG H gene
O-2 27 SNPs (18 Syn, 1 NonSyn) in 3 genes in 1 block, 2 genes encoding LuxR family transcriptional regulator 2 genes in 1 block, COG M and T
O-3 368 SNPs (269 Syn, 97 NonSyn) in 4 genes of 2 blocks, encoding multidrug resistance protein, lipase and long-chain fatty acid transport protein 0 gene
O-4 0 SNP 7 genes in 5 blocks, 4 genes encoding transferase
Others 236 SNPs (182 Syn, 41 NonSyn) in 48 genes, 8 genes encoding lateral flagellar 102 genes, 15 COG M genes