Abstract
Of the three classes of biopolymers—nucleic acids, proteins and glycoconjugates, nucleic acids and proteins have seen the most breakthroughs in understanding their biological role, in part due to their ready availability. The automation of oligonucleotide and peptide synthesis has been fruitful in providing biologists and biochemists with pure, well-defined structures. This work reviews the recent developments in the automated synthesis of oligosaccharides, the third class of biopolymers. Both glycosyl phosphates and glycosyl trichloroacetimidates have been used successfully in the automated assembly of oligosaccharides employing an octenediol-functionalized polystyrene resin. The product was cleaved either by methanolysis of an ester bond or by olefin cross metathesis. Several biologically important carbohydrates have been synthesized by automation, in a fraction of the time needed to synthesize them by traditional methods. For example, the tumor associated antigens Lewis Y, Ley-Lex, were synthesized by automation. A Leishmania cap tetrasaccharide and a malaria toxin vaccine candidate were also assembled.
Keywords: Automation, Carbohydrate synthesis, Oligosaccharides, Solid-phase
Contributor Information
Stefan Bräse, Email: braese@ioc.uka.de.
Peter H. Seeberger, Email: seeberger@org.chem.ethz.ch
References
- 1.Varki A, Cummins R, Esko J, Freeze H, Hart G, Marth J. Essentials of Glycobiology. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press; 1999. [PubMed] [Google Scholar]
- 2.Rudd PM, Guile GR, Küster B, Harvey DG, Oppendaker G, Dwek RA. Nature. 1997;388:205. doi: 10.1038/40677. [DOI] [PubMed] [Google Scholar]
- 3.Caruthers MH. Science. 1985;230:281. doi: 10.1126/science.3863253. [DOI] [PubMed] [Google Scholar]
- 4.Merrifield RB. Angew Chem Int Ed Engl. 1985;24:799. doi: 10.1002/anie.198507993. [DOI] [Google Scholar]
- 5.Khan SH, O'Neill RA. Modern Methods in Carbohydrate Synthesis. Amsterdam: Harwood Academic; 1996. [Google Scholar]
- 6.Tanaka H, Matoba N, Tsukamoto H, Takimoto H, Yamada H, Takahashi T. Synlett. 2005;2005:824. [Google Scholar]
- 7.Zhang Z, Ollmann IR, Ye XS, Wischnat R, Baasov T, Wong CH. J Am Chem Soc. 1999;121:734. doi: 10.1021/ja982232s. [DOI] [Google Scholar]
- 8.Sears P, Wong CH. Science. 2001;291:2344. doi: 10.1126/science.1058899. [DOI] [PubMed] [Google Scholar]
- 9.Miura T, Goto K, Hosaka D, Inazu T. Angew Chem Int Ed. 2003;42:2047. doi: 10.1002/anie.200250531. [DOI] [PubMed] [Google Scholar]
- 10.Ko KS, Jaipuri FA, Pohl NL. J Am Chem Soc. 2005;127:13162. doi: 10.1021/ja054811k. [DOI] [PubMed] [Google Scholar]
- 11.Mazoni L, Castelli R. Org Lett. 2004;6:4195. doi: 10.1021/ol048474g. [DOI] [PubMed] [Google Scholar]
- 12.Fumoto M, Hinou H, Ohta T, Ito T, Yamada K, Takimoto A, Kondo H, Shimizu H, Inazu T, Nakahara Y, Nishimura SI. J Am Chem Soc. 2005;127:11804. doi: 10.1021/ja052521y. [DOI] [PubMed] [Google Scholar]
- 13.Seeberger PH, Haase WC. Chem Rev. 2000;100:4349. doi: 10.1021/cr9903104. [DOI] [PubMed] [Google Scholar]
- 14.Fréchet JMJ, Schuerch C. J Am Chem Soc. 1971;93:492. doi: 10.1021/ja00731a031. [DOI] [Google Scholar]
- 15.Plante OJ, Palmacci ER, Seeberger PH. Science. 2001;291:1523. doi: 10.1126/science.1057324. [DOI] [PubMed] [Google Scholar]
- 16.Bayer E. Angew Chem, Int Ed Engl. 1991;30:113. doi: 10.1002/anie.199101133. [DOI] [Google Scholar]
- 17.Seneci P. Solid-Phase Synthesis and Combinatorial Technologies. New York: Wiley; 2002. [Google Scholar]
- 18.Andrade RB, Plante OJ, Melean LG, Seeberger PH. Org Lett. 1999;1:1811. doi: 10.1021/ol991071+. [DOI] [PubMed] [Google Scholar]
- 19.Love KR, Seeberger PH. Angew Chem Int Ed. 2004;43:602. doi: 10.1002/anie.200352539. [DOI] [PubMed] [Google Scholar]
- 20.Fraser-Reid B, Udodong UE, Wu Z, Ottosson H, Merritt JR, Rao CS, Roberts C, Madsen R. Synlett. 1992;1992:927. doi: 10.1055/s-1992-21543. [DOI] [Google Scholar]
- 21.Buskas T, Soderberg E, Konradsson P, Fraser-Reid B. J Org Chem. 2000;65:958. doi: 10.1021/jo9909554. [DOI] [PubMed] [Google Scholar]
- 22.Pon RT. Preparation od Solid Phase Supports. In: Agrawal S, editor. Methods in Molecular Biology 20: Protocols for Oligonucleotides and Analogues. Totowa: Humana Press; 1993. p. 467. [Google Scholar]
- 23.Werz DB, Castagner B, Seeberger PH. J Am Chem Soc. 2007;129:2770–2771. doi: 10.1021/ja069218x. [DOI] [PubMed] [Google Scholar]
- 24.Nicolaou KC, Pastor J, Winssinger N, Murphy F. J Am Chem Soc. 1998;120:5132. doi: 10.1021/ja980675q. [DOI] [PubMed] [Google Scholar]
- 25.Lütteke T, Bohne-Lang A, Loss A, Goetz T, Frank M, von der Lieth CW. Glycobiol. 2006;16:71R. doi: 10.1093/glycob/cwj049. [DOI] [PubMed] [Google Scholar]
- 26. Hashimoto S, Honda T, Ikegami S (1989) J Chem Soc Chem Comm 685
- 27.Boger DL, Honda T. J Am Chem Soc. 1994;116:5647. doi: 10.1021/ja00092a014. [DOI] [Google Scholar]
- 28.Duynstee HI, Wijsam ER, van deer Marel GA, van Boom JH. Synlett. 1996;1996:313. doi: 10.1055/s-1996-5401. [DOI] [Google Scholar]
- 29.Bohm G, Waldmann H. Liebigs Ann Chem. 1996;1996:613. [Google Scholar]
- 30.Plante OJ, Andrade RB, Seeberger PH. Org Lett. 1999;1:211. doi: 10.1021/ol9905452. [DOI] [PubMed] [Google Scholar]
- 31.Plante OJ, Palmacci ER, Andrade RB, Seeberger PH. J Am Chem Soc. 1999;123:9545. doi: 10.1021/ja016227r. [DOI] [PubMed] [Google Scholar]
- 32.Melean LG, Love KR, Seeberger PH. Carbohydr Res. 2002;337:1893. doi: 10.1016/S0008-6215(02)00299-9. [DOI] [PubMed] [Google Scholar]
- 33.Halcomb RL, Danishefsky SJ. J Am Chem Soc. 1989;111:6661. doi: 10.1021/ja00199a028. [DOI] [Google Scholar]
- 34.Ravidà A, Liu X, Kovacs L, Seeberger PH. Org Lett. 2006;8:1815. doi: 10.1021/ol0603155. [DOI] [PubMed] [Google Scholar]
- 35.Schmidt RR, Michel J. Angew Chem Int Ed Eng. 1980;19:731. doi: 10.1002/anie.198007311. [DOI] [Google Scholar]
- 36.Yu B, Tao H. Tet Lett. 2001;42:2405. doi: 10.1016/S0040-4039(01)00157-5. [DOI] [Google Scholar]
- 37.Yu B, Tao H. J Org Chem. 2002;67:9099. doi: 10.1021/jo026103c. [DOI] [PubMed] [Google Scholar]
- 38.Hewitt MC, Seeberger PH. Org Lett. 2001;3:3699. doi: 10.1021/ol016631v. [DOI] [PubMed] [Google Scholar]
- 39.McKenney D, Pouliot KL, Wang Y, Murthy V, Ulrich M, Döring G, Lee JC, Goldmann DA, Pier GB. Science. 1999;284:1523. doi: 10.1126/science.284.5419.1523. [DOI] [PubMed] [Google Scholar]
- 40.McKenney D, Pouliot KL, Wang Y, Murthy V, Ulrich M, Döring G, Lee JC, Goldmann DA, Pier GB. J Biotechnol. 2000;83:37. doi: 10.1016/S0168-1656(00)00296-0. [DOI] [PubMed] [Google Scholar]
- 41.Schofield L, Hewitt MC, Evans K, Siomos MA, Seeberger PH. Nature. 2002;418:785. doi: 10.1038/nature00937. [DOI] [PubMed] [Google Scholar]
- 42.Hewitt MC, Snyder DA, Seeberger PH. J Am Chem Soc. 2002;124:13434. doi: 10.1021/ja027538k. [DOI] [PubMed] [Google Scholar]
- 43.Feizi T. Glycobiology of AIDS. In: Ernst B, Hart GW, Sinaÿ P, editors. Carbohydrates in Chemistry and Biology, chap 52. New York: Wiley-VCH; 2000. pp. 851–863. [Google Scholar]
- 44.Lin G, Simmons G, Pohlmann S, Baribaud F, Ni HP, Leslie GJ, Haggarty B, Bates P, Weissman D, Hoxie JA, Doms RW. J Virol. 2003;77:1337. doi: 10.1128/JVI.77.2.1337-1346.2003. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45.Delmas B, Laude H. Virus Res. 1991;20:107. doi: 10.1016/0168-1702(91)90103-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 46.Wu X, Grathwohl M, Schmidt RR. Angew Chem Int Ed. 2002;41:4489. doi: 10.1002/1521-3773(20021202)41:23<4489::AID-ANIE4489>3.0.CO;2-X. [DOI] [PubMed] [Google Scholar]
- 47.Jonke S, Liu KG, Schmidt RR. Chem Eur J. 2006;12:1274. doi: 10.1002/chem.200500707. [DOI] [PubMed] [Google Scholar]
- 48.Ratner DM, Swanson ER, Seeberger PH. Org Lett. 2003;5:4717. doi: 10.1021/ol035887t. [DOI] [PubMed] [Google Scholar]
- 49.Ragupathi G, Deshpande PP, Coltart DM, Kim HM, Williams LJ, Danishefsky SJ, Livingston PO. Int J Cancer. 2002;99:207. doi: 10.1002/ijc.10305. [DOI] [PubMed] [Google Scholar]
- 50.Zheng CS, Seeberger PH, Danishefsky SJ. Angew Chem Int Ed Engl. 1998;37:786. doi: 10.1002/(SICI)1521-3773(19980403)37:6<786::AID-ANIE786>3.0.CO;2-F. [DOI] [PubMed] [Google Scholar]
- 51.Zhu T, Boons GJ. Chem Eur J. 2001;7:2382. doi: 10.1002/1521-3765(20010601)7:11<2382::AID-CHEM23820>3.0.CO;2-2. [DOI] [PubMed] [Google Scholar]
- 52.Love KR, Seeberger PH. J Org Chem. 2005;70:3168. doi: 10.1021/jo047723b. [DOI] [PubMed] [Google Scholar]
- 53.Carpino LA, Han GY. J Org Chem. 1972;37:3404. doi: 10.1021/jo00795a005. [DOI] [Google Scholar]
