Abstract
An increasing number of examples of translational regulation at the level of termination has been recently reported in eukaryotes. This paper reviews our present knowledge on this topic and proposes an understanding of these regulations by relating the study of viral gene expression to a comprehensive view of the mechanisms and components of the translational process.
Keywords: Viral gene expression; Nonsense suppression; Frameshift; suppressor tRNA; Protein synthesis termination; Translational accuracy; AIDS, acquired immunodeficiency syndrome; AlMV, alfalfa mosaic virus; BLV, bovine leukemia virus; BNYVV, beet necrotic yellow vein virus; bp, base pair; CaMV, cauliflower mosaic virus; CarMV, carnation mottle virus; FeLV, feline leukemia virus; HIV-1, human immunodeficiency virus type 1; HTLV I, human T-cell leukemia virus type I; HTLV II, human T-cell leukemia virus type II; IBV, infectious bronchitis virus; nt, nucleotide; LTSV, lucerne transient streak virus; Mo-MuLV, Moloney murine leukemia virus; MMTV, mouse mammary tumor virus; MPMV, Mason Pfizer monkey virus; ORF, open reading frame; P-Ser, phosphoserine; RaMuLV, Rauscher murine leukemia virus; RF, release factor; RSV, Rous sarcoma virus; Se-Cys, selenocysteine; TMV, tobacco mosaic virus; TRV, tobacco rattle virus; TYMV, turnip yellow mosaic virus; SBWMV, soil-borne wheat mosaic virus
Valle Rosaura P.C. and Morch Marie-Dominique(1988), Stop making sense or Regulation at the level of termination in eukaryotic protein synthesis, FEBS Letters, 235, doi: 10.1016/0014-5793(88)81225-0
The Institut Jacques Monod is an ‘Institut Mixte, CNRS‐Université Paris 7’
References
- 1. Barrell B.G., Bankier A.T., Drouin J., Nature, 282, (1979), 189– 194. [DOI] [PubMed] [Google Scholar]
- 2. Attardi G., Int. Rev. Cytol., 93, (1985), 93– 145. [DOI] [PubMed] [Google Scholar]
- 3. Horowitz S., Gorovsky M.A., Proc. Natl. Acad. Sci. USA, 82, (1985), 2452– 2455. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4. Helftenbein E., Nucleic Acids Res., 13, (1985), 415– 433. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5. Caron F., Meyer E., Nature, 314, (1985), 185– 188. [DOI] [PubMed] [Google Scholar]
- 6. Preer J.R. jr, Preer L.B., Rudman B.M., Barnett A.J., Nature, 314, (1985), 188– 190. [DOI] [PubMed] [Google Scholar]
- 7. Kuchino Y., Hanyu N., Tashiro F., Nishimura S., Proc. Natl. Acad. Sci. USA, 82, (1985), 4758– 4762. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8. Hanyu N., Kuchino Y., Nishimura S., Beier H., EMBO J., 5, (1986), 1307– 1311. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9. Steege D.A., Söll D.G., Goldberger R.F. Biological Regulation and Development 1, (1979), Plenum ; New York: 433– 485. Gene Expression [Google Scholar]
- 10. Caskey C.T., Trends Biochem. Sci., 5, (1980), 234– 237. [Google Scholar]
- 11. Beaudet A.L., Caskey C.T., Nature, 227, (1970), 38– 40. [DOI] [PubMed] [Google Scholar]
- 12. Köhli J., Grosjean H., Mol. Gen. Genet., 182, (1981), 430– 439. [DOI] [PubMed] [Google Scholar]
- 13. Murgola E.J., Hijazi K.A., Göringer H.U., Dahlberg A.E., Proc. Natl. Acad. Sci. USA, (1988), in press [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14. Celis D.G., Smith J.D., Nonsense Mutations and tRNA Suppressors (1979), Academic Press ; New York: [Google Scholar]
- 15. Söll D.G., Abelson J., Schimmel P.R., Transfer RNA: Biological Aspects (1980), Cold Spring Harbor Laboratory ; Cold Spring Harbor, NY: [Google Scholar]
- 16. Hatfield D.L., Trends Biochem. Sci., 10, (1985), 201– 204. [Google Scholar]
- 17. Morch M.D., Valle R.P.C., Haenni A.L., Perez Bercoff R. The Molecular Basis of Viral Replication (1987), Plenum ; New York: 113– 151. [Google Scholar]
- 18. Pelham H.R.B., Nature, 272, (1978), 469– 471. [DOI] [PubMed] [Google Scholar]
- 19. Goelet P., Lomonossoff G.P., Butler P.J.G., Akam M.E., Gait M.J., Karn J., Proc. Natl. Acad. Sci. USA, 79, (1982), 5818– 5822. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20. Beier H., Mundry K.W., Issinger O.-G., Intervirology, 14, (1980), 292– 299. [DOI] [PubMed] [Google Scholar]
- 21. Beier H., Barciszewska M., Krupp G., Mitnacht R., Gross H.J., EMBO J., 3, (1984), 351– 356. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22. Bienz M., Kübli E., Nature, 294, (1981), 188– 190. [DOI] [PubMed] [Google Scholar]
- 23. Beier H., Barciszewska M., Sickinger H.-D., EMBO J., 3, (1984), 1091– 1096. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24. Barciszewski J., Barciszewska M., Suter B., Kübli E., Plant Sci., 40, (1985), 193– 196. [Google Scholar]
- 25. Yokohama S., Miyazawa T., Iitaka Y., Yamaizumi Z., Kasai H., Nishimura S., Nature, 282, (1979), 107– 109. [DOI] [PubMed] [Google Scholar]
- 26. Hunter W.N., Brown T., Anand N.N., Kennard O., Nature, 320, (1986), 552– 555. [DOI] [PubMed] [Google Scholar]
- 27. Privé G.G., Heinemann H., Chandrasegaran S., Kan L.S., Kopka M.L., Dickerson R.E., Science, 238, (1987), 498– 504. [DOI] [PubMed] [Google Scholar]
- 28. Björk G.R., Ericson J.U., Gustafsson C.E.D., Hagervall T.G., Jönsson Y.H., Wikström P.M., Annu. Rev. Biochem., 56, (1987), 263– 287. [DOI] [PubMed] [Google Scholar]
- 29. Valle R.P.C., Morch M.-D., Haenni A.-L., EMBO J., 6, (1987), 3049– 3055. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30. Buckingham R.H., Grosjean H., Kirkwood T.B.L. Accuracy in Molecular Processes: its Control and Relevance to Living Systems (1987), Chapman and Hall ; London: 83– 126. [Google Scholar]
- 31. Kuchino Y., Beier H., Akita N., Nishimura S., Proc. Natl. Acad. Sci. USA, 84, (1987), 2668– 2672. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32. Yoshinaka Y., Katoh I., Copeland T.D., Oroszlan S., Proc. Natl. Acad. Sci. USA, 82, (1985), 1618– 1622. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33. Pure G.A., Robinson G.W., Naumovski L., Friedberg E.C., J. Mol. Biol., 183, (1985), 31– 42. [DOI] [PubMed] [Google Scholar]
- 34. Weiss W.A., Friedberg E.C., J. Mol. Biol., 192, (1986), 725– 735. [DOI] [PubMed] [Google Scholar]
- 35. Stewart T.S., Sharp S., Methods Enzymol., 106, (1984), 157– 161. [DOI] [PubMed] [Google Scholar]
- 36. Chambers I., Frampton J., Godfarb P., Affara N., McBain W., Harrison P.R., EMBO J., 5, (1986), 1221– 1227. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37. Ishida K., Morino T., Takagi K., Sukenaga Y., Nucleic Acids Res., 15, (1987), 10051– [DOI] [PMC free article] [PubMed] [Google Scholar]
- 38. Zinoni F., Birkmann A., Leinfelder W., Böck A., Proc. Natl. Acad. Sci. USA, 84, (1987), 3156– 3160. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39. Hawkes W.C., Tappel A.L., Biochim. Biophys. Acta, 739, (1983), 225– 234. [DOI] [PubMed] [Google Scholar]
- 40. Sunde R.A., Evenson J.K., J. Biol. Chem., 262, (1987), 933– 937. [PubMed] [Google Scholar]
- 41. Hawkes W.C., Lyons D.E., Tappel A.L., Biochim. Biophys. Acta, 699, (1982), 183– 191. [DOI] [PubMed] [Google Scholar]
- 42. Leinfelder W., Zehelin E., Mandrand-Berthelot M.A., Böck A., Nature, 331, (1988), 723– 725. [DOI] [PubMed] [Google Scholar]
- 43. Craigen W.J., Caskey C.T., Cell, 50, (1987), 1– 2. [DOI] [PubMed] [Google Scholar]
- 44. Brierly I., Boursnell M.E.G., Binns M.M., Bilimoria B., Blok V.C., Brown T.D.K., Inglis S.C., EMBO J., 6, (1987), 3779– 3785. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45. Shinnick T.M., Lerner R.A., Sutcliffe J.G., Nature, 293, (1981), 543– 548. [DOI] [PubMed] [Google Scholar]
- 46. Schwartz D.E., Tizard R., Gilbert W., Cell, 32, (1983), 853– 869. [DOI] [PubMed] [Google Scholar]
- 47. Jacks T., Varmus H.E., Science, 230, (1985), 1237– 1242. [DOI] [PubMed] [Google Scholar]
- 48. Wain-Hobson S., Sonigo P., Danos O., Cole S., Alizon M., Cell, 40, (1985), 9– 17. [DOI] [PubMed] [Google Scholar]
- 49. Ratner L., Haseltine W., Patarca R., Livak K.J., Stacich B., Josephs S.F., Doran E.R., Rafalski J.A., Whitehorn E.A., Baumeister K., Ivanoff L., Petteway S.R. jr, Pearson M.L., Lautenberger J.A., Papas T.S., Ghrayeb J., Chang N.T., Gallo R.C., Wong-Staal F., Nature, 313, (1985), 277– 284. [DOI] [PubMed] [Google Scholar]
- 50. Sanchez-Pescador R., Power M.D., Barr P.J., Steimer K.S., Stempien M.M., Brown-Shimer S.L., Gee W.W., Renard A., Randolph A., Levy J.A., Dina D., Luciw P.A., Science, 227, (1985), 484– 492. [DOI] [PubMed] [Google Scholar]
- 51. Sonigo P., Alizon M., Staskus K., Klatzmann D., Cole S., Danos O., Retzel E., Tiollais P., Haase A., Wain-Hobson S., Cell, 42, (1986), 369– 382. [DOI] [PubMed] [Google Scholar]
- 52. Jacks T., Power M.D., Masiarz F.R., Luciw P.A., Barr P.J., Varmus H.E., Nature, 331, (1988), 280– 283. [DOI] [PubMed] [Google Scholar]
- 53. Moore R., Dixon M., Smith R., Peters G., Dickson G., J. Virol., 61, (1987), 480– 490. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 54. Jacks T., Townsley K., Varmus H.E., Majors J., Proc. Natl. Acad. Sci. USA, 84, (1987), 4298– 4302. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 55. Hizi A., Henderson L.E., Copeland T.D., Sowder R.C., Hixson C.V., Oroszlan S., Proc. Natl. Acad. Sci. USA, 84, (1987), 7041– 7045. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56. Rice N.R., Stephens R.M., Burny A., Gilden R.V., Virology, 142, (1985), 357– 377. [DOI] [PubMed] [Google Scholar]
- 57. Sagata N., Yasunaga T., Tsuzuku-Kawamura J., Ohishi K., Ogawa Y., Ikawa Y., Proc. Natl. Acad. Sci. USA, 82, (1985), 677– 681. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58. Yoshinaka Y., Katoh I., Copeland T.D., Smythers G.W., Oroszlan S., J. Virol., 57, (1986), 826– 832. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 59. Seiki M., Hattori S., Hirayama Y., Yoshida M., Proc. Natl. Acad. Sci. USA, 80, (1983), 3618– 3622. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 60. Shimotohno K., Takahashi Y., Shimizu N., Gojobori T., Golde D.W., Chen I.S.Y., Miwa M., Sugimura T., Proc. Natl. Acad. Sci. USA, 82, (1985), 3101– 3105. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 61. Sonigo P., Barker C., Hunter E., Wain-Hobson S., Cell, 45, (1986), 375– 385. [DOI] [PubMed] [Google Scholar]
- 62. Laprevotte I., Hampe A., Sherr C.J., Galibert F., J. Virol., 50, (1984), 884– 894. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 63. Yoshinaka Y., Katoh I., Copeland T.D., Oroszlan S., J. Virol., 55, (1985), 870– 873. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 64. Varmus H.E., Shapiro J.A. Mobile Genetic Elements (1983), Academic Press ; New York: 411– 503. [Google Scholar]
- 65. Mellor J., Fulton S.M., Dobson M.J., Wilson W., Kingsman S.M., Kingsman A.J., Nature, 313, (1985), 243– 246. [DOI] [PubMed] [Google Scholar]
- 66. Clare J., Farabaugh P., Proc. Natl. Acad. Sci. USA, 82, (1985), 2829– 2833. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 67. Wilson W., Malim M.H., Mellor J., Kingsman A.J., Kingsman S.M., Nucleic Acids Res., 14, (1986), 7001– 7016. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 68. Saigo K., Kugimiya W., Matsuo Y., Inouye S., Yoshioka K., Yuki S., Nature, 312, (1984), 659– 661. [DOI] [PubMed] [Google Scholar]
- 69. Hull R., Covey S.N., J. Gen. Virol., 67, (1986), 1751– 1758. [DOI] [PubMed] [Google Scholar]
- 70. Penswick J., Hübler R., Hohn T., J. Virol., 62, (1988), 1460– 1463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 71. Roth J.R., Cell, 24, (1981), 601– 602. [DOI] [PubMed] [Google Scholar]
- 72. Curran J.F., Yarus M., Science, 238, (1987), 1545– 1550. [DOI] [PubMed] [Google Scholar]
- 73. Weiss R.B., Dunn D.M., Atkins J.F., Gesteland R.F., Cold Spring Harbour Symposium on Quantitative Biology, LII, (1988), 685– 693. [Google Scholar]
- 74. Huang W.M., Ao S.-Z., Casjens S., Orlandi R., Zeikus R., Weiss R., Winge D., Fang M., Science, 239, (1988), 1005– 1011. [DOI] [PubMed] [Google Scholar]
- 75. Murphy E.C. jr, Wills N., Arlinghaus R.B., J. Virol., 34, (1980), 464– 473. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 76. Strauss E.G., Rice C.M., Strauss J.H., Proc. Natl. Acad. Sci. USA, 80, (1983), 5271– 5275. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 77. Strauss E.G., Rice C.M., Strauss J.H., Virology, 133, (1984), 92– 110. [DOI] [PubMed] [Google Scholar]
- 78. Harbison S.-A., Davies J.W., Wilson T.M.A., J. Gen. Virol., 66, (1985), 2597– 2604. [Google Scholar]
- 79. Guilley J., Carrington J.C., Balazs E., Jonard G., Richards K., Morris T.J., Nucleic Acids Res., 13, (1985), 6663– 6677. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 80. Ziegler V., Richards K., Guilley H., Jonard G., Putz C., J. Gen. Virol., 66, (1985), 2079– 2087. [Google Scholar]
- 81. Bouzoubaa S., Ziegler V., Beck D., Guilley H., Richards K., Jonard G., J. Gen. Virol., 67, (1986), 1689– 1700. [Google Scholar]
- 82. Morch M.-D., Drugeon G., Benicourt C., Virology, 119, (1982), 193– 198. Morch M.-D., Boyer J.C., Haenni A.L., Nucleic Acids Res., 16, (1988), in press [DOI] [PubMed] [Google Scholar]
- 83. Pelham H.R.B., Virology, 97, (1979), 256– 265. [DOI] [PubMed] [Google Scholar]
- 84. Morris-Krsinich B.A.M., Forster R.L.S., Virology, 128, (1983), 176– 185. [DOI] [PubMed] [Google Scholar]
- 85. Hsu Y.H., Brakke M.K., Virology, 143, (1985), 272– 279. [DOI] [PubMed] [Google Scholar]
- 86. Joshi S., Neeleman L., Pleij C.W.A., Haenni A.-L., Chapeville F., Bosch L., Van Vloten-Doting L., Virology, 139, (1984), 231– 242. [DOI] [PubMed] [Google Scholar]
- 87. Engelberg-Kulka H., Schulaker-Schwarz R., J. Theor. Biol., 131, (1988), 477– 485. [DOI] [PubMed] [Google Scholar]
- 88. Bossi L., Roth J.R., Nature, 286, (1980), 123– 127. [DOI] [PubMed] [Google Scholar]
- 89. Miller J.H., Albertini A.M., J. Mol. Biol., 164, (1983), 59– 71. [DOI] [PubMed] [Google Scholar]
- 90. Bossi L., J. Mol. Biol., 164, (1983), 73– 87. [DOI] [PubMed] [Google Scholar]
- 91. Engelberg-Kulka H., Nucleic Acids Res., 9, (1981), 983– 991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 92. Haenni A.-L., Morch M.-D., Drugeon G., Valle R.P.C., Joshi R.L., Denial T.M., Brinton M.A. Rueckert R.R. Positive Strand RNA Viruses (1987), A.R. Liss ; New York: 149– 158. [Google Scholar]
- 93. Bienz M., Kübli E., Kohli J., De Henau S., Huez G., Marbaix G., Grosjean H., Nucleic Acids Res., 9, (1981), 3835– 3850. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 94. Sedivy J.M., Capone J.P., RajBhandary U.L., Sharp P.A., Cell, 50, (1987), 379– 389. [DOI] [PubMed] [Google Scholar]
- 95. Geller A.I., Rich A., Nature, 283, (1980), 41– 46. [DOI] [PubMed] [Google Scholar]
- 96. Hopfield J.J., Proc. Natl. Acad. Sci. USA, 71, (1974), 4135– 4139. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 97. Ninio J., Biochimie, 57, (1975), 587– 595. [DOI] [PubMed] [Google Scholar]
- 98. Ninio J., Kirkwood T.B.L. Accuracy in Molecular Processes: its Control and Relevance to Living Systems (1986), Chapman and Hill ; London: 291– 328. [Google Scholar]
- 99. Ninio J., Cold Spring Harbor Symposium on Quantitative Biology, LII, (1988), 639– 646. [Google Scholar]
- 100. Kurland C.G., Trends Biochem. Sci., 12, (1987), 169– 171. [Google Scholar]
- 101. Thompson R.C., Trends Biochem. Sci., 13, (1988), 91– 93. [DOI] [PubMed] [Google Scholar]
- 102. Wolf H., Chinali G., Parmeggiani A., Eur. J. Biochem., 75, (1971), 67– 75. [DOI] [PubMed] [Google Scholar]
- 103. Murgola E.J., Pagel F.T., Hijazi K.A., J. Mol. Biol., 175, (1984), 19– 27. [DOI] [PubMed] [Google Scholar]
- 104. Fuller W., Hodgson A., Nature, 215, (1967), 817– 820. [DOI] [PubMed] [Google Scholar]
- 105. Vijgenboom E., Vink T., Kraal B., Bosch L., EMBO J., 4, (1985), 1049– 1059. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 106. Hughes D., Atkins J.F., Thompson S., EMBO J., 6, (1987), 4235– 4239. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 107. Morch M.-D., Benicourt C., Eur. J. Biochem., 105, (1980), 445– 451. [DOI] [PubMed] [Google Scholar]
- 108. Hryniewicz M.M., Von der Haar R.A., Mol. Gen. Genet., 190, (1983), 336– 343. [DOI] [PubMed] [Google Scholar]
- 109. Kurkinen M., FEBS Lett., 124, (1981), 79– 83. [DOI] [PubMed] [Google Scholar]
- 110. Kurland C.G., Trends Biochem. Sci., 12, (1987), 210– 212. [Google Scholar]
- 111. Kurland C.G., Trends Biochem. Sci., 12, (1987), 126– 128. [Google Scholar]