Abstract
The nucleotide sequence of the gene that encodes for the structural viral protein VP1 of bovine rotavirus (RF strain) has been determined. The sequence data indicate that segment 1 contains 3302 by and is A+T rich (65.3%). The positive strand of segment 1 contains a single open reading frame that extends 1088 codons and possesses 5′- and 3′-terminal untranslated regions of 18 and 20 bp, respectively. The first AUG conforms to the Kozak consensus sequence and if utilized, would yield a protein having a calculated molecular weight of 124–847, very close to the apparent molecular weight of VP1 (M.W. 125,000). The deduced amino acid sequence presents significant similarities with RNA-dependent RNA polymerase of several RNA viruses. VP1 was also synthesized in baculovirus using two transfer vecors: pAC461 and pVL941. Following infection of Sf9 cells with a recombinant baculovirus, a full-length nonfusion protein was synthesised which shares properties with authentic VP1 made in monkey kidney cells. The level of VP1 synthesis was about 10-fold higher when the baculovirus recombinant was derived from the pVL941 transfer vector. In that case, VP1 was expressed in yields approximately equivalent to 10% of the cellular protein. The recombinant protein was immunoprecipitated by hyperimmune serum raised against purified rotavirus. It also was immunogenic; a hyperimmune serum made in guinea pigs reacted with VP1 using immunoprecipitation and Western blot. This serum did not possess neutralization activity.
Footnotes
Sequence Data from this article have been deposited with the EMBL/GenBank Data Libraries under Accession No. J04346.
References
- Bican P., Cohen J., Charpilienne A., Scherrer R. Purification and characterization of bovine rotavirus cores. J. Virol. 1982;10:1113–1117. doi: 10.1128/jvi.43.3.1113-1117.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Both G.W., Bellamy A.R., Siegman L.J. A general strategy for cloning double-stranded RNA: Nucleotide sequence of the simian-11 rotavirus gene 8. Nucleic Acids Res. 1982;10:7075–7088. doi: 10.1093/nar/10.22.7075. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Both G.W., Mattick J.S., Bellamy A.R. Vol. 80. 1983. Serotype-specific glycoprotein of simian 11 rotavirus: Coding assignment and gene sequence; pp. 3091–3095. (Proc. Natl. Acad. Sci. USA). [DOI] [PMC free article] [PubMed] [Google Scholar]
- Both G.W., Siegman L.J., Bellamy A.R., Atkinson P.H. Coding assignment and nucleotide sequence of simian rotavirus SA11 gene segment 10: Location of glycosylation sites suggest that the signal peptide is not cleaved. J. Virol. 1983;48:335–359. doi: 10.1128/jvi.48.2.335-339.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Both G.W., Bellamy A.R., Siegman L.J. Nucleotide sequence of the dsRNA genomic segment 7 of simian 11 rotavirus. Nucleic Acids Res. 1984;12:1621–1626. doi: 10.1093/nar/12.3.1621. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Boursnell M.E.G., Brown T.D.K., Foulds I.J., Green P.F., Tomley F.M., Binns M.M. Completion of the sequence of the genome of the coronavirus avian infectious bronchitis virus. J. Gen. Virol. 1987;68:57–77. doi: 10.1099/0022-1317-68-1-57. [DOI] [PubMed] [Google Scholar]
- Boyle J.F., Holmes K.V. RNA-binding proteins of bovine rotavirus. J. Virol. 1986;58:561–568. doi: 10.1128/jvi.58.2.561-568.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bremont M., Charpilienne A., Chabanne D., Cohen J. Nucleotide sequence and expression in Escherichia coli of the gene encoding the nonstructural protein NCVP2 of bovine rotavirus. Virology. 1987;161:138–144. doi: 10.1016/0042-6822(87)90179-6. [DOI] [PubMed] [Google Scholar]
- Cohen I., Lefevre F., Estes M.K., Bremont M. Cloning of bovine rotavirus (RF strain): Nucleotide sequence of the gene coding for the major capsid protein. Virology. 1984;138:178–182. doi: 10.1016/0042-6822(84)90159-4. [DOI] [PubMed] [Google Scholar]
- Dobos P., Hill B.J., Hallett R., Kells D.T.C., Becht H., Teninges D. Biophysical and biochemical characterization of five animal viruses with bisegmented double-stranded RNA genomes. J. Virol. 1979;32:593–605. doi: 10.1128/jvi.32.2.593-605.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ericson B.L., Graham D.Y., Mason B.B., Hanssen H.H., Estes M.K. Two types of glycoprotein precursors are produced by the simian rotavirus SA11. Virology. 1983;127:320–332. doi: 10.1016/0042-6822(83)90147-2. [DOI] [PubMed] [Google Scholar]
- Estes M.K., Graham D.Y., Gerba C.P., Smith E.M. Simian rotavirus SA11 replication in cell cultures. J. Virol. 1979;31:810–815. doi: 10.1128/jvi.31.3.810-815.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Estes M.K., Mason B.B., Crawford S., Cohen J. Cloning and nucleotide sequence of the simian rotavirus gene 6 that codes for the major inner capsid protein. Nucleic Acids Res. 1984;12:1875–1887. doi: 10.1093/nar/12.4.1875. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Estes M.K., Crawford S.E., Penaranda M.E., Petrie B.L., Burns J.W., Chan W.K., Ericson B., Smith G.E., Summers M.D. Synthesis and immunogenicity of the rotavirus major capsid antigen using a baculovirus expression system. J. Virol. 1987;61:1488–1494. doi: 10.1128/jvi.61.5.1488-1494.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gardner R.C., Howarth A.J., Hahn P., Brown-Luedi M., Shepherd R.J., Messing J. The complete nucleotide sequence of an infectious clone of cauliflower mosaic virus by M13mp7 shotgun sequencing. Nucleic Acid Res. 1981;9:2871–2888. doi: 10.1093/nar/9.12.2871. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Garnier J., Osguthorpe D.J., Robson B. Analysis of the accuracy and implications of simple methods for predicting secondary structure of globular proteins. J. Mol. Biol. 1978;120:97–120. doi: 10.1016/0022-2836(78)90297-8. [DOI] [PubMed] [Google Scholar]
- Gombold J.L., Ramig R.F. Assignment of simian rotavirus SA11 temperature-sensitive mutant groups A, C, F, and G to genome segments. Virology. 1987;161:463–473. doi: 10.1016/0042-6822(87)90140-1. [DOI] [PubMed] [Google Scholar]
- Gorbalenya A.E., Koonin E.V. Birnavirus RNA polymerase is related to polymerases of positive strand RNA viruses. Nucleic Acids Res. 1988;16:7735. doi: 10.1093/nar/16.15.7735. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Imai M., Richardson M.A., Ikegami N., Shatkin A.J., Furuichi Y. Vol. 80. 1983. Molecular cloning of double-stranded RNA virus genomes; pp. 373–377. (Proc. Natl. Acad. Sci. USA). [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kamer G., Argos P. Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses. Nucleic Acids Res. 1984;12:7269–7282. doi: 10.1093/nar/12.18.7269. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kanehisha I. Los Alamos sequence analysis package for nucleic acids and proteins. Nucleic Acids Res. 1982;10:183–196. doi: 10.1093/nar/10.1.183. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kantharidis P., Dyall-Smith M.L., Holmes I.H. Marked sequence variation between segment 4 genes of human RV-5 and simian SA11 rotaviruses. Arch. Virol. 1987;93:111–121. doi: 10.1007/BF01313897. [DOI] [PubMed] [Google Scholar]
- Kozak M. Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs. Nucleic Acids Res. 1984;12:5233–5252. doi: 10.1093/nar/12.2.857. [DOI] [PMC free article] [PubMed] [Google Scholar]
- L'Haridon R., Scherrer R. In vitro culture of a rotavirus associated with neonatal calf scours. Ann. Rech. Vet. 1976;7:373–381. [PubMed] [Google Scholar]
- Lipman, Pearson Rapid protein sequence similarity searches. Science. 1985;227:1435–1441. doi: 10.1126/science.2983426. [DOI] [PubMed] [Google Scholar]
- Liu M., Offit P.A., Estes M.K. Identification of the simian rotavirus SA11 genome segment 3 product. Virology. 1988;163:26–32. doi: 10.1016/0042-6822(88)90230-9. [DOI] [PubMed] [Google Scholar]
- Luckow V.A., Summers M.D. Trends in the development of Baculovirus expression vectors. Bio-Technology. 1988;6:47–55. [Google Scholar]
- Luckow V.A., Summers M.D. High level expression of non-fused foreign genes with Autographa californica nuclear polyhedrosis virus expression vectors. Virology. 1988 doi: 10.1016/0042-6822(89)90348-6. in press. [DOI] [PubMed] [Google Scholar]
- Maniatis T., Fritsch E.F., Sambrook J. Cold Spring Harbor Laboratory; Cold Spring Horbor, NY: 1982. (Molecular Cloning. A Laboratory Manual). [Google Scholar]
- Matsura Y., Posses R.D., Overton H.A., Bishop D.L. Baculovirus expression vectors: The requirements for high level expression of proteins, including glycoproteins. J. Gen. Virol. 1987;68:1233–1250. doi: 10.1099/0022-1317-68-5-1233. [DOI] [PubMed] [Google Scholar]
- Morgan M.M., Macreadie I.G., Harley V.R., Hudson P.J., Azad A.A. Sequence of the small double-stranded RNA genomic segment of infectious bursal disease virus and its deduced 90-kDa product. Virology. 1988;163:240–242. doi: 10.1016/0042-6822(88)90258-9. [DOI] [PubMed] [Google Scholar]
- Patton J.T., Gallegos C.O. Structure and protein composition of the rotavirus replicase particle. Virology. 1988;166:358–365. doi: 10.1016/0042-6822(88)90506-5. [DOI] [PubMed] [Google Scholar]
- Perlman D., Halvorson O. A putative signal peptidase recognition site and sequence in eukaryotic and prokaryotic signal peptides. J. Mol. Biol. 1983;167:391–409. doi: 10.1016/s0022-2836(83)80341-6. [DOI] [PubMed] [Google Scholar]
- Pietras D.F., Diamond M.E., Bruenn J.A. Identification of a putative RNA dependent RNA polymerase encoded by a yeast double stranded RNA virus. Nucleic Acids Res. 1988;16:6225. doi: 10.1093/nar/16.13.6225. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A.R. Vol. 74. 1977. DNA sequencing with chain-terminating inhibitors; pp. 5463–5467. (Proc. Natl. Acad. Sci. USA). [DOI] [PMC free article] [PubMed] [Google Scholar]
- Summers M.D., Smith G.E. A Manual of Methods for Baculovirus Vectors and Insect Cell Culture Procedures. Texas Agricultural Experiment Station Bulletin No. 1555. 1987 [Google Scholar]
- Van der Wilk F., Van Lent I.W.M., Vlak J.M. Immunogold detection of polyhedrin, p10 and virion antigens in Autographa califomica nuclear olyhedrosis virus-infected Spodoptera frugiperda cells. J. Gen. Virol. 1987;68:2615–2623. [Google Scholar]