Table 1.
Substrates | TBDTs | Genomes | Evidence | References |
---|---|---|---|---|
Iron-siderophore complex | FauA | Bordetella pertussis | Ex | [41] |
FecA | Escherichia coli | Ex | [42] | |
FepA | Escherichia coli | Ex | [43] | |
FhuA | Escherichia coli | Ex | [44] | |
FptA | Pseudomonas aeruginosa | Ex | [45] | |
FpvA | Pseudomonas aeruginosa | Ex | [46] | |
FrpB | Neisseria meningitidis | Ex | [47] | |
FyuA | Yersenia pestis | Ex | [48] | |
HemR | Yersenia enterocolitica | Ex | [49] | |
TbpA | Neisseria meningitidis | Ex | [47] | |
Cobalamins | BtuB | Escherichia coli | Ex | [50] |
BPSL0976 | Burkholderia pseudomallei | Pr | [51] | |
PA1271 | Pseudomonas aeruginosa | Pr | [51] | |
PA2911 | Pseudomonas aeruginosa | Pr | [51] | |
RS02718 | Ralstonia solanacearum | Pr | [51] | |
RSP_2402 | Rhodbacter sphaeroides | Pr | [51] | |
Sucrose | SuxA | Xanthomonas campestris | Ex | [8] |
Sfri_3988 | Shewanella frigidimarina | Pr | [8] | |
Maltose | MalA | Caulobacter vibrioides | Ex | [52] |
Chitin | XCC2469 | Xanthomonas campestris | Pr | [53] |
XCC2944 | Xanthomonas campestris | Pr | [53] | |
CPS_1021 | Colwellia psychrerythraea | Pr | [53] | |
Sden_2708 | Shewanella denitrificans | Pr | [53] | |
Xylan | XCC4120 | Xanthomonas campestris | Pr | [8] |
Copper | NosA | Pseudomonas stutzeri | Pr | [54,55] |
OprC | Pseudomonas aeruginosa | Pr | [54,55] | |
NosA | Pseudomonas putida | Ex | [54,55] | |
OprC | Pseudomonas putida | Ex | [54,55] | |
Nickel | FrpB4 | Helicobacter pylori | Ex | [13] |
Daro_3944 | Dechloromonas aromatica | Pr | [56] | |
BLL6948 | Bradyrhizobium diazoefficiens | Pr | [56] | |
IL54_0463 | Sphingobium sp. ba1 | Tr | [16] | |
IL54_3057 | Sphingobium sp. ba1 | Tr | [16] | |
Thiamin | BF0615 | Bacteroides fragilis | Pr | [57] |
CPS_0067 | Colwellia psychrerythraea | Pr | [57] | |
Sputw3181_2365 | Shewanella | Pr | [57] | |
GOX1347 | Gluconobacter oxydans | Pr | [57] | |
Cobalt | Daro_1684 | Dechloromonas aromatica | Pr | [56] |
Pectin | XCC0120 | Xanthomonas campestris | Pr | [8] |
Colicin | CirA | Escherichia coli | Ex | [58] |
Heme | HasR | Serratia marcescens | Ex | [49] |
ShuA | Shigella dysenteriae | Ex | [59] | |
Sulfanilic acid | BES08_08830 | Novosphingobium resinovorans SA1 | Tr | [36] |
BES08_18055 | Novosphingobium resinovorans SA1 | Tr | [36] | |
BES08_18430 | Novosphingobium resinovorans SA1 | Tr | [36] | |
BES08_18580 | Novosphingobium resinovorans SA1 | Tr | [36] | |
BES08_22625 | Novosphingobium resinovorans SA1 | Tr | [36] | |
BES08_23675 | Novosphingobium resinovorans SA1 | Tr | [36] | |
BES08_26825 | Novosphingobium resinovorans SA1 | Tr | [36] | |
Various substrates under nutrient limitation | Sala_0027 | Sphingopyxis alaskensis RB2256 | Tr | [14] |
Sala_0914 | Sphingopyxis alaskensis RB2256 | Tr | [14] | |
Sala_1228 | Sphingopyxis alaskensis RB2256 | Tr | [14] | |
Sala_1913 | Sphingopyxis alaskensis RB2256 | Tr | [38] | |
Sala_3029 | Sphingopyxis alaskensis RB2256 | Tr | [14] | |
Sala_3108 | Sphingopyxis alaskensis RB2256 | Tr | [14] | |
Saro_0168 | Novosphingobium aromaticivorans DSM 12444 | Tr | [14] | |
Saro_1603 | Novosphingobium aromaticivorans DSM 12444 | Tr | [14] | |
SKA58_00625 | Sphingomonas sp. SKA58 | Tr | [14] | |
SKA58_14617 | Sphingomonas sp. SKA58 | Tr | [14] | |
SKA58_18137 | Sphingomonas sp. SKA58 | Tr | [14] | |
Dibenzo-p-dioxin | Swit_0277 | Sphingomonas wittichii RW1 | Tr | [33] |
Swit_1066 | Sphingomonas wittichii RW1 | Tr | [33] | |
Swit_3263 | Sphingomonas wittichii RW1 | Tr | [33] | |
Swit_4088 | Sphingomonas wittichii RW1 | Tr | [33] | |
Swit_4197 | Sphingomonas wittichii RW1 | Tr | [33] | |
Dibenzofuran | Swit_0687 | Sphingomonas wittichii RW1 | Tr | [33] |
Swit_2477 | Sphingomonas wittichii RW1 | Tr | [33] | |
Swit_3189 | Sphingomonas wittichii RW1 | Tr | [33] | |
Swit_3918 | Sphingomonas wittichii RW1 | Tr | [33] | |
Swit_4025 | Sphingomonas wittichii RW1 | Tr | [33] | |
Swit_4696 | Sphingomonas wittichii RW1 | Tr | [33] | |
Swit_4781 | Sphingomonas wittichii RW1 | Tr | [33] |
Ex: experimentally validated, Pr: predicted, Tr: transcriptome and proteome analysis.