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. Author manuscript; available in PMC: 2021 Apr 1.
Published in final edited form as: Kidney Int. 2019 Dec 13;97(4):786–792. doi: 10.1016/j.kint.2019.11.023

Clinical features of genetically-confirmed patients with primary hyperoxaluria identified by clinical indication versus familial screening.

David J Sas 1, Felicity T Enders 2, Ramila A Mehta 2, Xiaojing Tang 3, Fang Zhao 4, Barbara M Seide 4, Dawn S Milliner 1, John C Lieske 5
PMCID: PMC7175669  NIHMSID: NIHMS1565563  PMID: 32093915

Abstract

Primary hyperoxaluria is a rare monogenic disorder characterized by excessive hepatic production of oxalate leading to recurrent nephrolithiasis, nephrocalcinosis and progressive kidney damage. Most patients with primary hyperoxaluria are diagnosed after clinical suspicion based on symptoms. Since some patients are detected by family screening following detection of an affected family member, we compared the clinical phenotype of these two groups. Patients with primary hyperoxaluria types 1, 2, and 3 enrolled in the Rare Kidney Stone Consortium Primary Hyperoxaluria Registry were retrospectively analyzed following capture of clinical and laboratory results in the Registry. Among 495 patients with primary hyperoxaluria, 47 were detected by family screening. After excluding 150 patients with end stage kidney disease at diagnosis, 300 clinical suspicion and 45 family screening individuals remained. Compared to patients with clinical suspicion, those identified by family screening had significantly fewer stones at diagnosis (mean 1.2 vs. 3.6), although initial symptoms occurred at a similar age (median age 6.1 vs. 7.6 years). Urinary oxalate did not differ between these groups. The estimated glomerular filtration rate at diagnosis and its decline over time were similar for the two groups. Altogether, five of 45 in family screening and 67 of 300 of clinical suspicion individuals developed end stage kidney disease at last follow-up. Thus, patients with primary hyperoxaluria identified through family screening have significant disease despite no outward clinical suspicion at diagnosis. Since promising novel treatments are emerging, genetic screening of family members is warranted because they are at significant risk for disease progression.

Keywords: primary hyperoxaluria, genetic testing, kidney stones

Graphical Abstract

graphic file with name nihms-1565563-f0004.jpg

INTRODUCTION:

Primary hyperoxaluria (PH) is a rare autosomal recessive monogenic disorder characterized by excessive hepatic production of oxalate leading to recurrent nephrolithiasis, nephrocalcinosis, and progressive kidney damage, often resulting in end-stage kidney disease (ESKD). Mutations in three genes have been identified that cause the three known types of PH: AGXT leading to PH type 1 (PH1), GRHPR leading to PH type 2 (PH2), and HOGA1 leading to PH type 3 (PH3).1 Other patients have clinical features consistent with a genetic cause of hyperoxaluria but lack mutations in any of these 3 genes.

Most patients are diagnosed with PH after initially presenting with clinical symptoms (kidney stones, nephrocalcinosis and/or chronic kidney disease (CKD)) and found to have markedly elevated urine and/or plasma oxalate, and lack known gastrointestinal causes of enteric hyperoxaluria. Morbidity and mortality of this autosomal recessive disorder is quite high, with PH1 generally being most severe, followed by PH2, then PH3. Therefore, once an affected proband is identified, screening of all siblings is generally advised either via staged biochemical measurement of urinary oxalate and genetic screening if hyperoxaluria is present, or immediate genetic screening for the mutation(s) identified in the proband. If an affected sibling is identified and hyperoxaluria confirmed, treatments including hyper-hydration and use of crystallization inhibitors (citrate or neutral phosphorus) could be initiated earlier, even prior to any disease manifestations, though the value of a primary prevention strategy has never been assessed in PH.

In In the current study we hypothesized that PH patients identified by familial screening (FS) might have a milder phenotype than those diagnosed due to clinical suspicion (CS). We used data in the Rare Kidney Stone Consortium PH Registry to test this hypothesis.

RESULTS:

Among the 495 genetically confirmed PH patients in the RKSC registry at the time of this analysis, 345 remained after 150 were excluded due to development of ESKD within 60 days of diagnosis. The entire cohort including those with ESKD was analyzed separately. Among those who did not develop ESKD within 60 days of diagnosis, 45 (13%) were identified by FS, and the remaining 300 diagnosed due to CS (Figure 1). Sensitivity analysis that compared censoring deaths vs. treating death as an event yielded similar results. Table 1 displays clinical and imaging data for the two groups. Follow-up was 10.1 and 12.0 years in the CS and FS groups, respectively (p=0.35). As expected, those identified by FS were younger at diagnosis (median age 3.9 vs. 7.5 yrs for FS and CS cases, respectively, p<0.001). However, initial symptoms occurred at a similar age for both groups (median age 3.2 vs. 4.2 yrs for FS and CS cases, p=0.18).

Figure 1:

Figure 1:

Study flowchart of subjects with primary hyperoxaluria (PH) identified either through clinical suspicion (CS) or family screening (FS).

Table 1:

Clinical, imaging, and laboratory data from all primary hyperoxaluria patients who did not develop ESKD within 60 days of diagnosis.

Diagnosis Type
Clinical Suspicion (N=300) Family Screening (N=45) Total (N=345) P-value
PH type, n (%) 0.271
 PH 1 210 (70.0%) 32 (71.1%) 242 (70.1%)
 PH 2 34 (11.3%) 8 (17.8%) 42 (12.2%)
 PH 3 56 (18.7%) 5 (11.1%) 61 (17.7%)
Gender, n (%) 0.201
 Male 177 (59.0%) 22 (48.9%) 199 (57.7%)
 Female 123 (41.0%) 23 (51.1%) 146 (42.3%)
Follow-up duration (years) 0.351
 N 300 45 345
 Mean (SD) 10.1 (12.01) 12.0 (12.94) 10.4 (12.13)
 Median 5.5 6.6 5.7
 Range 0.0, 64.1 0.0, 46.7 0.0, 64.1
Age at first symptoms (years) 0.182
 N 263 26 289
 Mean (SD) 7.6 (8.72) 6.1 (8.59) 7.5 (8.71)
 Median 4.2 3.2 4.1
 Range 0.1, 41.5 0.1, 39.9 0.1, 41.5
Age at diagnosis (years) <0.0012
 N 300 45 345
 Mean (SD) 14.8 (16.39) 8.0 (9.70) 13.9 (15.84)
 Median 7.5 3.9 6.9
 Range 0.0, 70.7 0.0, 39.4 0.0, 70.7
Nephrocalcinosis present at diagnosis 0.981
 No 253 (84.3%) 38 (84.4%) 291 (84.3%)
 Yes 47 (15.7%) 7 (15.6%) 54 (15.7%)
Nephrocalcinosis prior to ESKD, n (%) 0.561
 No 219 (73.0%) 31 (68.9%) 250 (72.5%)
 Yes 81 (27.0%) 14 (31.1%) 95 (27.5%)
Stones passed prior to diagnosis, n (%) <.0011
 No 162 (54.0%) 39 (86.7%) 201 (58.3%)
 Yes 138 (46.0%) 6 (13.3%) 144 (41.7%)
Number of stone passage episodes 0.792
 N 95 10 105
 Mean (SD) 2.4 (2.09) 1.7 (0.82) 2.3 (2.01)
 Median 1 1.5 1
 Range 1.0, 11.0 1.0, 3.0 1.0, 11.0
Total # stones imaged at diagnosis 0.0052
 N 142 13 155
 Mean (SD) 3.6 (4.01) 1.2 (1.64) 3.9 (8.58)
 Median 2.5 0 2
 Range 0.0, 21.0 0.0, 4.0 0.0, 100.0
Number of urological procedures for stones 0.422
 N 83 7 90
 Mean (SD) 3.9 (4.50) 2.3 (1.80) 3.8 (4.37)
 Median 2 2 2
 Range 1.0, 29.0 1.0, 6.0 1.0, 33.0
eGFR at diagnosis (mL/min/1.73m2) 0.662
 N 181 22 203
 Mean (SD) 75.6 (31.16) 83.1 (47.00) 85.2 (124.93)
 Median 69.6 73.6 70.1
 Range 17.0, 260.6 28.9, 251.1 17.0, 1790.3
eGFR slope (mL/min/year) 0.862
 N 187 31 218
 Mean (SD) −1.2 (11.67) −5.8 (22.81) −1.9 (13.83)
 Median −0.3 −0.4 −0.4
 Range −84.8, 46.7 −94.4, 30.8 −94.4, 46.7
End-stage kidney disease, n (%) 0.171
 No 233 (77.7%) 39 (86.7%) 272 (78.8%)
 Yes 67 (22.3%) 6 (13.3%) 73 (21.2%)
Plasma oxalate at diagnosis (mcmol/L) 0.012
 N 39 4 43
 Mean (SD) 9.0 (11.67) 27.3 (17.50) 10.7 (13.19)
 Median 5.8 25.4 8.1
 Range 0.0, 68.0 10.3, 48.0 0.0, 68.0
24-hour oxalate excretion (mmol/BSA/24 hours) at diagnosis 0.122
 N 162 15 177
 Mean (SD) 2.0 (1.30) 2.8 (2.82) 2.0 (1.50)
 Median 1.7 2.4 1.7
 Range 0.3, 7.7 0.5, 12.5 0.3, 12.5
Average 24-hour oxalate excretion (mmol/BSA/24 hours) prior to ESKD 0.712
 N 233 34 267
 Mean (SD) 1.6 (1.01) 1.8 (1.13) 1.7 (1.03)
 Median 1.4 1.4 1.4
 Range 0.2, 7.6 0.3, 5.7 0.2, 7.6
24-hour calcium excretion (mg/kg/24 hours) at diagnosis 0.892
 N 140 6 146
 Mean (SD) 1.7 (1.49) 1.7 (1.26) 1.7 (1.48)
 Median 1.2 1.8 1.2
 Range 0.1, 9.5 0.1, 3.2 0.1, 9.5
24-hour citrate excretion (mg/BSA/24 hours) at diagnosis 0.582
 N 118 5 123
 Mean (SD) 523.1 (423.79) 590.4 (814.87) 525.8 (440.67)
 Median 432.4 281.9 423
 Range 10.5, 1912.8 51.6, 2035.8 10.5, 2035.8
24-hour urine volume (mL/BSA/24 hours) at diagnosis 0.522
 N 145 12 157
 Mean (SD) 2477.6 (1209.36) 2201.2 (913.26) 2456.5 (1189.24)
 Median 2240.8 1821.5 2213.9
 Range 645.4, 7007.0 1193.2, 3576.6 645.4, 7007.0
1

Chi-Square

2

Kruskal Wallis

Urinary biochemical parameters did not differ between the 2 groups (Table 1). Mean 24-hour oxalate excretion at diagnosis was similar (2.0 for CS vs. 2.8 mmol/1.73m2/24 hours for FS, p=0.12; Figure 2). Although plasma oxalate concentration was higher in the FS group, only 4 subjects had a plasma oxalate result at the time of diagnosis. Those identified by FS had fewer stones by imaging at diagnosis (mean 1.2 vs. 3.6, p=0.005). Similarly, the FS group had a lower percentage of subjects who had passed stones prior to diagnosis (13.3% vs. 46.0%, p<0.001). The percentage of subjects with nephrocalcinosis did not differ between the two groups (27.0% in CS vs. 31.1% in FS, p=0.56).

Figure 2: 24-hour urinary oxalate excretion between CS and FS.

Figure 2:

Median daily oxalate excretion was similar between the two groups (p=0.12).

eGFR at the time of diagnosis and loss of kidney function over time (eGFR slope) were similar between the two groups. Altogether, 13.3% (6/45) of FS patients and 22.3% (67/300) of CS developed ESKD at last follow-up (p=0.17) (Figure 3).

Figure 3: Kaplan-Meier curve for risk of ESKD between CS and FS.

Figure 3:

Risk of progression to ESKD was similar between the two (p=0.56)

The entire cohort (n=495) included 150 subjects who developed ESKD within 60 days of diagnosis was also subjected to a sensitivity analysis (Table 2). In this larger group, 47 (10%) were identified by FS. As expected, the mean eGFR at the time of diagnosis was significantly lower in the CS subgroup (55.0 vs. 76.9 mL/min/1.73m2, p=0.02). Otherwise, differences in clinical values between the CS and FS groups paralleled those present in the smaller cohort without ESKD within 60 days of diagnosis.

Table 2:

Clinical, imaging, and laboratory data from all primary hyperoxaluria patients.

Diagnosis Type
Clinical Suspicion (N=448) Family Screening (N=47) Total (N=495) P-value
PH type, n (%) 0.281
 PH 1 349 (77.9%) 34 (72.3%) 383 (77.4%)
 PH 2 43 (9.6%) 8 (17.0%) 51 (10.3%)
 PH 3 56 (12.5%) 5 (10.6%) 61 (12.3%)
Gender, n (%) 0.241
 Male 250 (55.8%) 22 (46.8%) 272 (54.9%)
 Female 198 (44.2%) 25 (53.2%) 223 (45.1%)
Follow-up duration (years) 0.031
 N 448 47 495
 Mean (SD) 8.4 (10.80) 11.9 (12.69) 8.7 (11.02)
 Median 4.6 6.6 4.7
 Range 0.0, 64.1 0.0, 46.7 0.0, 64.1
Age at first symptoms (years) 0.122
 N 394 27 421
 Mean (SD) 9.4 (10.92) 6.5 (8.63) 9.2 (10.80)
 Median 4.9 3.7 4.8
 Range 0.1, 53.0 0.1, 39.9 0.1, 53.0
Age at diagnosis (years) <.0012
 N 448 47 495
 Mean (SD) 18.0 (18.08) 8.6 (10.03) 17.1 (17.69)
 Median 10.6 4 9.6
 Range 0.0, 74.0 0.0, 39.4 0.0, 74.0
Nephrocalcinosis present at diagnosis 0.492
 Yes 363 (81.0%) 40 (85.1%) 403 (81.4%)
 No 85 (19.0%) 7 (14.9%) 92 (18.6%)
Stones passed prior to diagnosis, n (%) <0.0011
 No 264 (58.9%) 40 (85.1%) 304 (61.4%)
 Yes 184 (41.1%) 7 (14.9%) 191 (38.6%)
Number of stone passage episodes 0.892
 N 106 10 116
 Mean (SD) 2.3 (2.09) 1.7 (0.82) 2.3 (2.07)
 Median 1 1.5 1
 Range 1.0, 11.0 1.0, 3.0 1.0, 11.0
Total # stones imaged at diagnosis 0.021
 N 185 14 199
 Mean (SD) 3.8 (7.90) 1.4 (1.74) 3.6 (7.65)
 Median 2 0.5 2
 Range 0.0, 100.0 0.0, 4.0 0.0, 100.0
Number of urological procedures for stones 0.562
 N 89 7 96
 Mean (SD) 3.7 (4.40) 2.3 (1.80) 3.6 (4.28)
 Median 2 2 2
 Range 1.0, 29.0 1.0, 6.0 1.0, 33.0
eGFR at diagnosis (mL/min/1.73m2) 0.022
 N 282 24 307
 Mean (SD) 55.0 (43.27) 76.9 (49.49) 56.7 (44.10)
 Median 53.9 71.2 55.8
 Range 1.9, 324.7 5.8, 251.1 1.9, 324.7
eGFR slope (mL/minute/year) 0.921
 N 195 31 226
 Mean (SD) −1.3 (11.49) −5.8 (22.81) −1.9 (13.62)
 Median −0.3 −0.4 −0.4
 Range −84.8, 46.7 −94.4, 30.8 −94.4, 46.7
End-stage renal failure, n (%) 0.0011
 No 241 (53.8%) 39 (83.0%) 280 (56.6%)
 Yes 207 (46.2%) 8 (17.0%) 215 (43.4%)
End-stage renal failure 60 Days after dx, n (%) <.0011
 No 300 (67.0%) 45 (95.7%) 345 (69.7%)
 Yes 148 (33.0%) 2 (4.3%) 150 (30.3%)
Plasma oxalate at diagnosis (mcmol/L) 0.921
 N 88 6 94
 Mean (SD) 53.7 (54.63) 36.1 (21.75) 52.6 (53.25)
 Median 30 36.6 33.1
 Range 0.0, 200.0 10.3, 69.7 0.0, 200.0
Plasma oxalate average prior to ESKD (mcmol/L) 0.051
 N 146 26 172
 Mean (SD) 18.1 (30.55) 8.5 (10.65) 16.6 (28.63)
 Median 7.1 3.1 6.3
 Range 0.0, 160.5 0.9, 48.0 0.0, 160.5
24-hour oxalate excretion (mmol/BSA/24 hours) at diagnosis 0.342
 N 187 17 204
 Mean (SD) 1.9 (1.30) 2.6 (2.76) 2.0 (1.48)
 Median 1.6 2 1.6
 Range 0.1, 7.7 0.1, 12.5 0.1, 12.5
24-hour calcium excretion (mg/kg/24 hours) at diagnosis 0.752
 N 158 6 164
 Mean (SD) 1.6 (1.45) 1.7 (1.26) 1.6 (1.44)
 Median 1 1.8 1.1
 Range 0.1, 9.5 0.1, 3.2 0.1, 9.5
24-hour citrate excretion (mg/BSA/24 hours) at diagnosis 0.692
 N 132 5 137
 Mean (SD) 494.2 (417.27) 590.4 (814.87) 497.7 (433.09)
 Median 407.7 281.9 397
 Range 10.5, 1912.8 51.6, 2035.8 10.5, 2035.8
24-hour urine volume (mL/BSA/24 hours) at diagnosis 0.322
 N 169 13 182
 Mean (SD) 2447.9 (1240.17) 2054.0 (1022.72) 2419.8 (1227.70)
 Median 2260.2 1670.2 2241.3
 Range 74.3, 7007.0 288.4, 3576.6 74.3, 7007.0
1

Chi-Square

2

Kruskal Wallis

The sample size was insufficient to allow subgroup analysis of the different forms of PH detected by CS vs FS.

DISCUSSION:

The current study compared the clinical course of PH patients genetically diagnosed because of CS versus those detected by FS after a proband had been diagnosed. The results indicate that those identified via FS were younger with fewer stones at the time of diagnosis compared to those with clinical indications for testing. Nevertheless, the presence of NC at initial evaluation and ultimate clinical course after diagnosis of both groups appeared similar, including the rate of GFR loss over time. Thus, severity of urinary stone disease (USD) and symptoms at the time of diagnosis does not imply a more benign long-term prognosis.

It was interesting to note that some of the FS group were entirely asymptomatic when diagnosed, while others had experienced symptomatic USD prior to their diagnosis, and PH had not previously been considered. Potential reasons for this include an incomplete work-up for USD, lower index of suspicion for the possibility of PH until the proband was diagnosed, and initial unwillingness of the patient to have genetic testing.

PH is a rare autosomal recessive monogenic disorder characterized by marked hyperoxaluria, often with a severe phenotype. Patients frequently experience kidney stones, nephrocalcinosis, and ESKD. While it is extraordinarily rare for patients with PH3 to reach ESKD, 57% of PH1 patients reach ESKD by age 40 and 14-25% of PH2 patients have reached ESKD.2,3 Current evidence suggests that the degree of hyperoxaluria at diagnosis as well as presence of nephrocalcinosis increase ESKD risk, while kidney stone risk may be less dependent on degree of hyperoxaluria in this patient population.4,5 Current treatments include maintaining a dilute urine by increased fluid intake, as well as liberal use of crystallization inhibitors, including potassium citrate or neutral phosphorus.6,7 Other treatment strategies require an individualized approach based on patient-specific risk factors. Pyridoxine is a cofactor for alanine:glyoxylate aminotransferase, the aberrant enzyme in PH1, and pharmacological doses of pyridoxine can significantly reduce urinary oxalate excretion in a subset of PH1 patients with specific mutations.8 Despite these measures, the risk of ESKD is high, especially in PH type 1.

Because of the severe phenotype associated with PH, once a proband has been identified it is recommended that all siblings should be screened for the disorder. It has previously been assumed that probands are identified first because they have a more severe phenotype than unaffected siblings, despite a shared genotype. Causes of an earlier presentation and more severe phenotype could include environmental cofactors or genetic modifiers. In the current study, patients who underwent genetic testing because of CS were older and had more stones at the time of diagnosis than the FS group, as might be expected. However, biochemical characteristics of those patients identified by FS were very similar to those identified because of CS, suggesting that the underlying mutation is the most important determinant of these features. In addition, subsequent loss of GFR was similar between the 2 groups.

The current study strongly supports family screening in PH once a proband is diagnosed, since even though these individuals are often asymptomatic at diagnosis, their ultimate clinical course is similar to those that present with symptoms. Initiation of currently-available treatments at an earlier age may have benefits. In addition, promising treatments for PH, including siRNA-based therapeutics, are now entering phase III clinical trials, while work continues to identify other innovative agents for treatment, like stiripentol.2,9 The benefit of early genetic diagnosis and treatment has been established for other pediatric disease processes,1012 and these novel treatment possibilities may offer significantly improved clinical outcomes for PH patients preemptively identified through genetic screening.

Initial screening can be conducted by measurement of urine oxalate excretion or random oxalate/creatinine and renal ultrasound with confirmation by genetic testing if hyperoxaluria, stones, or nephrocalcinosis are found. An algorithm to guide steps in diagnosis has been published.1 It is important to note that access to health care and diagnostic testing is vital for diseases like PH and unfortunately is not equally available throughout the world. It is also important to consider that genetic testing can have significant negative impacts and should be done thoughtfully. While the Genetic Information Act of 2008 prevents discrimination based on genetic testing results for employment and health insurance, it does not offer protection for other types of insurance including life, disability, or long-term care.13 Thus potential benefits must be weighed against the potential risks and fully discussed with the patient/parents to allow informed consent before performing genetic testing.

Our study has several strengths and weaknesses. This was a retrospective analysis of clinical registry data, a voluntary data set that is inherently incomplete. Screening was not performed in all siblings and it is possible that there are siblings with genetic disease who, indeed, manifest a milder phenotype for reasons yet to be explained. Nevertheless, data from a large registry of affected PH patients with genetically confirmed diagnoses was available for this study that supports the importance of familial screening. While we recognize that primary hyperoxaluria is a rare disease, the primary finding that patients with genetic disease discovered through family screening had similar disease severity as the proband may be applicable to many rare diseases.

CONCLUSION:

Patients identified through family PH screening have a similar disease severity as those identified due to CS. Although those detected by FS have fewer stones at the time of diagnosis, their biochemical and clinical characteristics including loss of kidney function over 10 years following diagnosis, appear very similar to those whose diagnosis was made due to clinical suspicion. Thus, familial screening is important to identify PH patients who are likely to benefit from early initiation of treatment.

METHODS:

Study population

This was a retrospective observational study. Clinical and laboratory information were collected from PH patients in the RKSC PH registry enrolled between 2003 and 2018.14 Demographics, clinical, and laboratory data were abstracted from the Registry. In the current study PH1 was confirmed by mutations of the AGXT gene, PH2 by mutations of GRHPR, and PH3 by mutations of HOGA1. Probands diagnosed after the onset of end stage kidney disease (ESKD) were excluded from this analysis.

All 24-hour urine values were from baseline (0-60 days after diagnosis) or during follow-up (> 60 days until last available prior to ESKD). Renal function was assessed using the Full Age Spectrum (FAS) GFR equation since the cohort spans age ranges from infancy to late adulthood.15 ESKD or renal failure was defined as an eGFR <15 ml/min/1.73m2 or start of dialysis or kidney transplantation. Episodes of stone passage and urological procedures for stones were self-reported.

Statistical Methods

Results were expressed as median (25th, 75th) for continuous variables and as percentages for categorical variables. Comparisons between groups for the categorical variables were performed with the Chi-square test for categorical variables and the Kruskal-Wallis test for continuous variables. To maximize data for analysis, the value closest to diagnosis between 3 years prior and 60 days after diagnosis was used.

The percentage of subjects free of ESKD following PH diagnosis was estimated using the Kaplan-Meier method. Factors associated with renal survival were estimated by univariate analyses using Cox’s proportional hazard model with log-rank tests and trend tests used for comparison between subgroups. ESKD was considered the event and censored on death or loss to follow-up. We further assessed the same model treating deaths as events, rather than censoring them, as a sensitivity analysis. P values < 0.05 were considered to be statistically significant. All calculations were performed using SAS (version 9.4).

Acknowledgements:

This work was funded by the Rare Kidney Stone Consortium (U54DK83908), which is part of Rare Diseases Clinical Research Network (RDCRN), an initiative of the Office of Rare Diseases Research (ORDR), National Center for Advancing Translational Sciences (NCATS). This consortium was funded through collaboration between NCATS, and the National Institute of Diabetes and Digestive and Kidney Diseases.

Footnotes

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Disclosures: All of the authors declare no competing interests.

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