Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Software, algorithm | CAZy database | doi: 10.1093/nar/gkt1178 | CAZy- Carbohydrate Active Enzyme, RRID:SCR_012909 | |
| Software, algorithm | mapgaps | doi: 10.1093/bioinformatics/btp342 | ||
| Software, algorithm | omcBPPS | doi: 10.1089/cmb.2013.0099 | ||
| Software, algorithm | GT-A family classification and sequences | This paper | doi:10.5061/dryad.v15dv41sh | |
| Software, algorithm | MAFFT v7.3 | doi: 10.1093/molbev/mst010 | MAFFT, RRID:SCR_011811 | |
| Software, algorithm | Expresso from the t-coffee suite | doi: 10.1093/nar/gkl092 | T-Coffee, RRID:SCR_011818 | |
| Software, algorithm | IQTree v1.6.1 | doi: 10.1093/molbev/msu300 | ||
| Software, algorithm | PyMOL v2.0.6 | Schrödinger | PyMOL, RRID:SCR_000305 | |
| Software, algorithm | Python v3 with package scikitlearn | Pedregosa, 2011 | scikit-learn, RRID:SCR_002577 | |
| Software, algorithm | R package ‘randomForest’ | Liaw and Wiener, 2002 | RandomForest Package in R, RRID:SCR_015718 | |
| Software, algorithm | WEKA version 3.8.3 | Witten et al., 2016 | Weka, RRID:SCR_001214 |