Update of variants identified in the pancreatic β‐cell KATP channel genes KCNJ11 and ABCC8 in individuals with congenital hyperinsulinism and diabetes

Elisa De Franco; Cécile Saint‐Martin; Klaus Brusgaard; Amy E Knight Johnson; Lydia Aguilar‐Bryan; Pamela Bowman; Jean‐Baptiste Arnoux; Annette Rønholt Larsen; May Sanyoura; Siri Atma W Greeley; Raúl Calzada‐León; Bradley Harman; Jayne A L Houghton; Elisa Nishimura‐Meguro; Thomas W Laver; Sian Ellard; Daniela del Gaudio; Henrik Thybo Christesen; Christine Bellanné‐Chantelot; Sarah E Flanagan

doi:10.1002/humu.23995

. 2020 Feb 17;41(5):884–905. doi: 10.1002/humu.23995

Update of variants identified in the pancreatic β‐cell K_ATP channel genes KCNJ11 and ABCC8 in individuals with congenital hyperinsulinism and diabetes

Elisa De Franco ¹, Cécile Saint‐Martin ², Klaus Brusgaard ³, Amy E Knight Johnson ⁴, Lydia Aguilar‐Bryan ⁵, Pamela Bowman ¹, Jean‐Baptiste Arnoux ⁶, Annette Rønholt Larsen ⁷, May Sanyoura ⁸, Siri Atma W Greeley ⁸, Raúl Calzada‐León ⁹, Bradley Harman ¹, Jayne A L Houghton ¹⁰, Elisa Nishimura‐Meguro ¹¹, Thomas W Laver ¹, Sian Ellard ^1,¹⁰, Daniela del Gaudio ⁴, Henrik Thybo Christesen ^7,¹², Christine Bellanné‐Chantelot ², Sarah E Flanagan ^1,^✉

PMCID: PMC7187370 PMID: 32027066

Abstract

The most common genetic cause of neonatal diabetes and hyperinsulinism is pathogenic variants in ABCC8 and KCNJ11. These genes encode the subunits of the β‐cell ATP‐sensitive potassium channel, a key component of the glucose‐stimulated insulin secretion pathway. Mutations in the two genes cause dysregulated insulin secretion; inactivating mutations cause an oversecretion of insulin, leading to congenital hyperinsulinism, whereas activating mutations cause the opposing phenotype, diabetes. This review focuses on variants identified in ABCC8 and KCNJ11, the phenotypic spectrum and the treatment implications for individuals with pathogenic variants.

Keywords: ABCC8, congenital hyperinsulinism, K‐ATP channel, KCNJ11, neonatal diabetes

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1. INTRODUCTION

ATP‐sensitive potassium (K_ATP) channels were found to couple glucose metabolism to membrane electrical activity and insulin release over 30 years ago (Ashcroft, Harrison, & Ashcroft, 1984; Cook & Hales, 1984; Rorsman & Trube, 1985). This landmark discovery was fundamental to further understanding of the insulin secretion pathway whereby glucose metabolism results in a change in ratio of ADP and ATP. The binding of ATP to the channel induces channel closure, depolarization of the membrane, and activation of voltage‐dependent calcium channels, leading to calcium influx, and insulin granule exocytosis (Figure 1a).

Schematic representation of insulin secretion in the pancreatic β‐cell. (a) In a normal cell in a high plasma glucose environment. (b) In a cell with an activating K_ATP channel mutation. (c) In a cell with an inactivating mutation resulting in the absence/reduction in protein at the membrane surface d) In a cell with an inactivating mutation that impairs the stimulatory effect of MgADP (a) Glucose is metabolized after entry into the β‐cell via a GLUT transporter. This results in change in the ATP:ADP ratio, leading to channel closure and membrane depolarization and activation of voltage‐dependent calcium channels. Calcium enters the cell, which triggers insulin release. (b) An activating mutation in a K_ATP channel gene results in the membrane being maintained in a hyperpolarized state. Calcium channels remain closed and insulin is not secreted. (c) Loss‐of‐function mutations can result in an absence/reduction in protein at the membrane surface. This keeps the membrane in a depolarized state, regardless of the metabolic state ultimately leading to unregulated insulin secretion. (d) Loss‐of‐function missense mutations can produce channels that traffic to the membrane but have impaired mgADP activation

Given the role of the K_ATP channel in insulin secretion, it is not unexpected that variants in KCNJ11, encoding the four pore‐forming inwardly rectifying Kir6.2 subunits, and ABCC8, encoding the four sulphonylurea receptor 1 (SUR1) subunits of the channel, can cause hypo‐ or hyperglycemia (Babenko et al., 2006; Gloyn, Pearson, et al., 2004; Thomas et al., 1995; Thomas, Ye, & Lightner, 1996). Identifying these mutations is important for informing prognosis, medical management, and recurrence risk.

Over recent years, the number of variants identified in these two genes has expanded tremendously. In 2006, 124 disease‐causing mutations were reported, which increased to 265 pathogenic variants 3 years later (Flanagan et al., 2009; Gloyn, Siddiqui, & Ellard, 2006). By combining published reports together with data from five international molecular genetic screening laboratories in the UK, Denmark, France, and the United States of America, we now report 953 pathogenic ABCC8 and KCNJ11 variants (Tables S1–S6) and discuss the role of these genes in congenital hyperinsulinism (CHI) and monogenic diabetes.

2. CONGENITAL HYPERINSULINISM

CHI is characterized by the inappropriate secretion of insulin despite low blood glucose, which can result in irreversible brain damage if not promptly treated (Helleskov et al., 2017). The condition has a variable phenotype usually presenting during the neonatal period or infancy with seizures and/or coma and a large birth weight due to high levels of insulin acting as a growth factor in utero.

Although most cases of CHI are sporadic, rare familial forms have been well documented. Sporadic CHI has an estimated incidence of between 1 in 27,000 and 1 in 50,000 live births (Glaser, Thornton, Otonkoski, & Junien, 2000; Otonkoski et al., 1999). However, in some isolated populations or in countries with high rates of consanguineous unions, the incidence is higher (i.e., 1 in 2,675 to 1 in 3,200; Mathew et al., 1988; Otonkoski et al., 1999).

2.1. CHI due to K_ATP channel mutations

Loss‐of‐function ABCC8 mutations were first described in 1995 (Thomas et al., 1995). These mutations either prevent trafficking of the channel to the membrane surface or are associated with channels that reach the surface but are not fully responsive to MgADP activation (Figure 1; Ashcroft, 2005; Nichols et al., 1996; Taschenberger et al., 2002). The majority of ABCC8 loss‐of‐function mutations are recessively acting with a small number of dominant missense mutations reported that produce channels that traffic to the membrane but have impaired mgADP activation.

Fewer loss‐of‐function mutations have been reported in KCNJ11 in keeping with the gene being much smaller (1173 vs. 4749 bases, respectively; Thomas et al., 1996). Similar to ABCC8, both dominant and recessively acting KCNJ11 mutations have been described (Pinney et al., 2013). Mutations in these two genes together account for 36–70% of CHI cases (Kapoor et al., 2013; Snider et al., 2013).

There exist mouse models for K_ATP channel CHI; however, their inability to fully recapitulate the human phenotype means that they have a limited value for studying specific disease mechanisms. For example, mice generated with a deletion of ABCC8 or KCNJ11, or the homozygous recessive KCNJ11 mutation p.(Tyr12Ter), do not have the sustained neonatal hypoglycemia observed in humans with homozygous null mutations. Instead the blood glucose levels normalize in the mouse within a few days of birth with glucose intolerance developing in later life (Hugill, Shimomura, Ashcroft, & Cox, 2010; Miki et al., 1998; Seghers, Nakazaki, DeMayo, Aguilar‐Bryan, & Bryan, 2000). The differences in the phenotype between mice and humans are not fully understood, but they highlight the need to develop human‐specific models for studying disease mechanisms.

2.2. Clinical management of K_ATP channel CHI

In 2015, the Pediatric Endocrine Society published recommendations for the evaluation and management of persistent hypoglycemia in neonates, infants, and children (Thornton et al., 2015). The main treatment for CHI is the K_ATP channel‐opener diazoxide; however, patients with ABCC8/KCNJ11 mutations that prevent trafficking to the membrane do not respond to the drug as diazoxide targets the SUR1 subunit of the K_ATP channel. For approximately 50% of patients with mutations that do not prevent the channel from reaching the membrane, diazoxide is an effective treatment (Boodhansingh et al., 2019). For patients with diazoxide‐unresponsive CHI, second‐line treatment with somatostatin analogs may be helpful to control hypoglycemia; however, adverse effects on somatostatin analogs, and likewise diazoxide, have been reported (Demirbilek et al., 2014; Herrera et al., 2018).

The mode of inheritance of the K_ATP channel mutation determines the pancreatic histological subtype (de Lonlay et al., 1997; de Lonlay et al., 2002; Jack, Walker, Thomsett, Cotterill, & Bell, 2000; Rahier et al., 1984). Inheritance of two recessively acting or one dominant ABCC8/KCNJ11 mutation results in diffuse disease affecting the entire pancreas. Focal disease is caused by somatic loss of the maternal chromosome 11p15.5 region by uniparental disomy that unmasks a paternally inherited K_ATP channel mutation at 11p15.1. These focal lesions often appear histologically as small regions of islet adenomatosis that develop as a result of the imbalanced expression of maternally imprinted tumor suppressor genes H19 and p57^Kip2, and the increased expression of the paternally derived insulin‐like growth factor II gene (Craigie et al., 2018; Damaj et al., 2008; de Lonlay et al., 1997). Rarely, giant focal lesions have been described where virtually the whole of the pancreas is affected (Ismail et al., 2012). Atypical mosaic disease has also been reported in a small number of cases (Han et al., 2017; Houghton et al., 2019; Hussain et al., 2008; Sempoux et al., 2011).

The identification of a single recessively acting K_ATP channel mutation in an individual with CHI predicts focal disease with 84–97% sensitivity, with a positive predictive value up to 94% (Mohnike et al., 2014; Snider et al., 2013). ¹⁸F‐DOPA PET/CT scanning can identify and localize a focal lesion before surgery (Otonkoski et al., 2006). Intraoperative ultrasound may further aid the surgeon to perform tissue‐sparing pancreatic resection in focal CHI, which is potentially curative (Bendix et al., 2018).

3. DIABETES MELLITUS

Diabetes is the opposing disorder to CHI and results from hyper‐ rather than hypoglycemia. Current estimates suggest that approximately 0.4% of all diabetes (and up to 3.5% of those diagnosed under 30 years of age) has a monogenic cause (Shepherd et al., 2016; Shields et al., 2017). Individuals diagnosed with monogenic diabetes outside of infancy are generally classified as having maturity onset diabetes of the young, whereas neonatal diabetes (NDM) describes congenital diabetes. In individuals with NDM, impaired insulin secretion results in a low birth weight and hyperglycemia diagnosed before the age of 6 months (Hattersley & Ashcroft, 2005). The minimal incidence of NDM has been calculated to be between 1 in 89,000 and 1 in 160,949 live births (Grulich‐Henn et al., 2010; Wiedemann et al., 2010).

3.1. Later‐onset diabetes due to K_ATP channel mutations

Dominantly acting mutations in the K_ATP channel genes have been rarely described in individuals with later‐onset diabetes in the absence of documented hyper‐ or hypoglycemia in the neonatal period (Bowman et al., 2012; Hartemann‐Heurtier et al., 2009; Huopio et al., 2003; Koufakis et al., 2019; Tarasov et al., 2008). The mechanism(s) leading to this variable penetrance are not fully understood and may differ according to whether the mutation is causing a gain or loss of channel function. Interestingly, in one study, the generation of a mouse model harboring a homozygous dominantly acting loss‐of‐function ABCC8 mutation p.(Glu1507Lys) recapitulated the biphasic phenotype with the mice having increased insulin secretion in early life and reduced insulin secretion later on. This was shown to be resulting from a reduction in insulin content rather than a reduction of islet number and/or size. Heterozygosity for the mutation did, however, not result in a phenotype in the mouse, further highlighting differences between the mouse models and human disease (Shimomura et al., 2013).

3.2. Neonatal diabetes due to K_ATP channel mutations

Strong support for the role of gain‐of‐function K_ATP channel mutations in the etiology of diabetes came from the observation that mice overexpressing a mutant K_ATP channel with reduced ATP sensitivity developed diabetes within 2 days (Koster, Marshall, Ensor, Corbett, & Nichols, 2000). In 2004, the first heterozygous activating KCNJ11 mutations causing NDM were described in humans with activating ABCC8 mutations reported 2 years later (Babenko et al., 2006; Gloyn, Pearson, et al., 2004; Proks et al., 2006). Mutations in these two genes together have now been shown to account for approximately 40% of NDM cases (De Franco et al., 2015; Stoy et al., 2008).

Both dominant and recessive activating mutations are frequently identified in ABCC8. Conversely for KCNJ11, all, but one of the mutations reported so far, p.(Gly324Arg), have been dominantly acting. The majority (~60%) of dominant mutations arise “de novo,” so there is often no family history of diabetes; however, germline mosaicism has been observed in some families (Edghill et al., 2007; Gloyn, Cummings, et al., 2004).

There is added complexity associated with ABCC8 mutations, as compound heterozygosity for both an activating and an inactivating mutation can cause diabetes (Ellard et al., 2007). Furthermore, a recessively inherited ABCC8 nonsense variant has been reported in two cases with NDM, which leads to the deletion of the in‐frame exon 17 likely resulting in enhanced sensitivity of the channel to intracellular MgADP/ATP (Flanagan et al., 2017).

The specific K_ATP channel mutation identified determines whether the diabetes will cause permanent or transient NDM (Gloyn, Reimann, et al., 2005; Patch, Flanagan, Boustred, Hattersley, & Ellard, 2007). Variable penetrance within families with mutations leading to transient diabetes is observed with some individuals being diagnosed with diabetes at birth, yet others developing diabetes for the first time in adulthood (see previous section on adult‐onset diabetes; Flanagan, Edghill, Gloyn, Ellard, & Hattersley, 2006).

3.3. Spectrum of central nervous system features in K_ATP channel NDM

Central nervous system (CNS) features are frequently reported in individuals with K_ATP channel NDM due to the Kir6.2 and SUR1 proteins being expressed in the brain (Karschin, Ecke, Ashcroft, & Karschin, 1997; Liss, Bruns, & Roeper, 1999; Sakura, Ammala, Smith, Gribble, & Ashcroft, 1995; Schmahmann & Sherman, 1998). The most severe neurological phenotype is termed as developmental delay, epilepsy and neonatal diabetes (DEND) syndrome, which includes muscle weakness and hypotonia (Hattersley & Ashcroft, 2005). Intermediate DEND (iDEND) syndrome is diagnosed when epilepsy is absent or presents after the age of 12 months (Gloyn, Diatloff, et al. 2006). Clinical studies have reported CNS features in approximately 20–30% of individuals with K_ATP channel permanent NDM (De Franco et al., 2015; Massa et al., 2005; Sagen et al., 2004).

Since these initial reports, studies on larger cohorts of individuals affected with K_ATP channel NDM have characterized the neurological features in more detail. Additional features reported include autism and attention deficit hyperactivity disorder (ADHD), anxiety and sleep disorders, dyspraxia, and learning difficulties, resulting in impaired attention, memory, visuospatial abilities, and executive function (Beltrand et al., 2015; Bowman et al., 2016; Bowman et al., 2017; Bowman, Day, et al., 2018; Busiah et al., 2013; Landmeier, Lanning, Carmody, Greeley, & Msall, 2017). More important, it is now recognized that some degree of impairment can be detected on neuropsychological testing in the majority of patients with K_ATP channel mutations, even if there is no obvious CNS involvement (Busiah et al., 2013; Carmody et al., 2016).

3.4. Clinical management of neonatal diabetes and CNS features due to K_ATP channel mutations

The identification of a K_ATP channel mutation can have an impact on the medical management of patients with NDM as approximately 90% can transfer from insulin injections to high‐dose sulphonylurea tablets (Pearson et al., 2006; Zung, Glaser, Nimri, & Zadik, 2004). Sulphonylureas bind to the SUR1 subunit of the K_ATP channel and close it independently of ATP, resulting in excellent long‐term glycemic control and improved quality of life for affected patients and their families (Babenko et al., 2006; Bowman, Sulen et al., 2018; Rafiq et al., 2008). Patients who are unable to transfer to sulphonylureas tend to have a longer duration of diabetes before attempting transfer or functionally severe mutations (Babiker et al., 2016; Thurber et al., 2015). Few side effects and no episodes of severe hypoglycemia involving seizures or loss of consciousness have been reported in individuals with sulphonylurea‐treated neonatal diabetes (Bowman, Sulen, et al., 2018; Codner, Flanagan, Ellard, Garcia, & Hattersley, 2005; Kumaraguru et al., 2009; Lanning et al., 2018).

Sulphonylureas can improve the neurological features in people with K_ATP channel NDM, particularly in the first year of treatment (Beltrand et al., 2015; Fendler et al., 2013; Stoy et al., 2008). However, these features do not fully resolve after sulphonylurea therapy and persist for a long term into adulthood (Bowman, Day et al., 2018; Bowmen, Sulen, et al., 2018). Higher doses of sulphonylureas are recommended for patients with severe neurological features in an attempt to mitigate this (https://www.diabetesgenes.org/). In addition, starting sulphonylurea therapy as early as possible after a genetic diagnosis is crucial as the largest improvements appear to occur in younger patients (Beltrand et al., 2015; Shah, Spruyt, Kragie, Greeley, & Msall, 2012).

4. GENETIC VARIATION IN ABCC8 AND KCNJ11

KCNJ11 (MIM# 600937) is located 4.5Kb from ABCC8 on chromosome 11p15.1 and has a single exon encoding for the 390‐amino acid Kir6.2 protein (GenBank NM_000525.3). ABCC8 consists of 39 exons that encode for the 1,582 amino acids of SUR1 (NM_001287174.1; MIM# 600509). This gene has an alternatively spliced recognition site at the 5′ end of exon 17, which results in two different transcripts differing in length by a single amino acid (GenBank AH003589.2). This alternative splicing has led to discrepancies in the literature for nomenclature of variants present in 17–39, which differ by a single amino acid depending on the isoform used (1581 amino acids, NM_000249.3 and 1582 amino acids, NM_001287174.1). For the purpose of this review, we have described ABCC8 variants according to the longer isoform (NM_001287174.1).

4.1. Disease‐causing variants

A total of 748 ABCC8 and 205 KCNJ11 pathogenic or likely pathogenic variants have been identified in individuals with CHI or NDM (Table 1 and Table 3 and Tables S1 and S4) — please note that these tables are meant to direct to the appropriate references and laboratories. They do not provide in‐depth clinical information and variants that had been previously reported as pathogenic with a GnomAD frequency compatible with the disease frequency (as calculated by http://cardiodb.org/allelefrequencyapp/ using a biallelic mode of inheritance, a prevalence of 1/50,000, an allelic heterogeneity of 0.1, genetic heterogeneity of 0.5, and penetrance of 0.5) were not re‐assessed.

Table 1.

Unpublished pathogenic variants identified in KCNJ11 (NM_000525.3)

Protein change	Nucleotide change	Mutation type	Phenotype	Zygosity	Likely dominant or recessively acting	GnomAD MAF	Reporting laboratory
p.(Arg4Cys)	c.10C>T	Missense	TNDM PNDM	Heterozygous	Dominant	0.00002150	Exeter
p.(Leu17Pro)	c.50T>C	Missense	PNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Tyr26Ter)	c.78C>A	Nonsense	HI	Homozygous	Recessive	0	Exeter
p.(Arg27Cys)	c.79C>T	Missense	HI	Heterozygous^Pat	Recessive	0.000007976	Chicago
p.(Lys38Glu)	c.112A>G	Missense	HI	Homozygous	Recessive	0	Exeter
p.(Gly40Ala)	c.119G>C	Missense	HI	Homozygous	Recessive	0	Exeter
p.(Ile49Phe)	c.145A>T	Missense	TNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Glu51Gly)	c.152A>G	Missense	PNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Arg54Cys)	c.160C>T	Missense	HI/ Later‐onset diabetes	Homozygous/ Heterozygous	Recessive/ Dominant	0.000007078	Exeter/ Paris
p.(Leu56Gly)	c.166_167delinsGG	Missense	HI	Homozygous	Recessive	0	Exeter
p.(Thr62SerfsTer68)	c.185del	Frameshift	HI	Homozygous	Recessive	0	Exeter
p.(Cys81AlafsTer49)	c.240del	Frameshift	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Asp99Tyr)	c.295G>T	Missense	HI	Heterozygous^denovo	Dominant	0	Paris
p.(Ala120CysfsTer7)	c.356dup	Frameshift	HI	Homozygous	Recessive	0	Exeter
p.(Val129Met)	c.385G>A	Missense	NDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Gly132TyrfsTer10)	c.390_393dup	Frameshift	HI	Homozygous	Recessive	0	Exeter
p.(Cys166Trp)	c.498C>G	Missense	NDM	Heterozygous	Not known	0	Chicago
p.(Met169Thr)	c.506T>C	Missense	PNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Ala178LeufsTer11)	c.532del	Frameshift	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Glu179Lys)	c.535G>A	Missense	TNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Arg206His)	c.617G>A	Missense	Later‐onset diabetes/HI	Heterozygous/ Heterozygous^denovo /Heterozygous^Pat	Not known/ Dominant/ Not known	0	Paris/Paris/ Odense
p.(Ser208Thr)	c.623G>C	Missense	HI	Heterozygous^denovo	Dominant	0	Exeter
p.(Tyr258Ter)	c.774C>A	Nonsense	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(His259MetfsTer61)	c.775del	Missense	HI	Homozygous	Recessive	0	Exeter
p.(Gln279Ter)	c.835C>T	Nonsense	HI	Homozygous	Recessive	0	Exeter
p.(Gln289Ala)	c.866G>C	Missense	HI	Heterozygous^Pat	Recessive	0	Chicago
p.(Gly295Ser)	c.883G>A	Missense	HI	Homozygous	Recessive	0	Paris
p.(Val328Met)	c.982G>A	Missense	TNDM	Heterozygous	Dominant	0	Exeter
p.(Tyr330Asn)	c.988T>A	Missense	TNDM	Heterozygous	Dominant	0	Exeter
p.(Tyr330His)	c.988T>C	Missense	Diabetes	Heterozygous	Not known	0	Chicago
p.(Ser331Pro)	c.991T>C	Missense	PNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Gly334Ser)	c.1000G>A	Missense	PNDM	Heterozygous	Dominant	0	Exeter
p.(Gly334Arg)	c.1000G>C	Missense	PNDM	Heterozygous^denovo	Dominant	0	Exeter

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Note: The phenotype column highlights a new phenotype; the reporting laboratory column indicates which laboratory has identified the variant in a patient with the new phenotype. See Supporting Information data for details of inclusion criteria for variants in this table.

Abbreviations: HI, hyperinsulinism; PNDM, permanent neonatal diabetes mellitus; Ter, termination codon; TNDM, transient neonatal diabetes mellitus.

Table 3.

Unpublished pathogenic variants identified in ABCC8 (NM_001287174.1)

Protein change	Nucleotide position	Position	Mutation type	Phenotype	Zygosity	Likely dominant or recessive	GnomAD MAF	Reporting laboratory
p.?	c.(?‐1)_(1011+1_1012–1)del	Exons 1–6	Deletion	HI	Heterozygous^Pat	Recessive	0	Exeter
p.?	c.(?‐1)_(4749+?)del	Exons 1–39	Deletion	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Gly7Cys)	c.19G>T	Exon1	Missense	HI	Compound heterozygous	Recessive	0	Paris
p.(Glu9Ter)	c.25G>T	Exon 1	Nonsense	HI	Homozygous	Recessive	0	Exeter
p.(Asn10ThrfsTer68)	c.29del	Exon 1	Frameshift	HI	Heterozygous	Not known	0	Exeter
p.(Gln19Ter)	c.55C>T	Exon 1	Nonsense	HI	Homozygous/ Homozygous	Recessive/ Recessive	0.000004209	Exeter/ Odense
p.(Gly25AlafsTer53)	c.74del	Exon 1	Frameshift	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Cys26Trp)	c.78C>G	Exon 1	Missense	HI	Heterozygous^Pat	Recessive	0	Paris
p.(Val28SerfsTer61)	c.81_82insA	Exon 1	Frameshift	HI	Heterozygous	Not known	0	Exeter
p.(Ile46Thr)	c.137T>C	Exon 1	Missense	HI	Compound heterozygous	Recessive	0	Paris
p.?	c.(148+1_149–1)_(290+1_291–1)del	Exon 2	Deletion	HI	Homozygous/ Homozygous	Recessive/ Recessive	0	Exeter/ Odense
p.(Trp65Ter)	c.195G>A	Exon 2	Nonsense	HI	Homozygous	Recessive	0	Paris
p.(Arg74Leu)	c.221G>T	Exon 2	Missense	HI	Heterozygous^Pat	Recessive	0.000003978	Odense
p.(Trp75CysfsTer12)	c.225_229del	Exon 2	Frameshift	HI	Compound heterozygous	Recessive	0	Exeter
p.?	c.(290+1_291–1)_822+1_823–1)del	Exons 3–5	Deletion	HI	Homozygous	Recessive	0	Exeter
p.(Pro133Arg)	c.398C>G	Exon 3	Missense	HI	Homozygous	Recessive	0	Seattle
p.?	c.(412+1_413–1)_(579+1_580–1)del	Exon 4	Deletion	HI	Compound heterozygous	Recessive	0	Paris
p.(Leu175AlafsTer97)	c.522dup	Exon 4	Frameshift	HI	Homozygous	Recessive	0	Exeter
p.?	c.580–2A>G	Intron 4	Aberrant splicing	HI	Homozygous/ Heterozygous^Pat	Recessive/ Recessive	0	Exeter/ Odense
p.(Pro206Leu)	c.617C>T	Exon 5	Missense	TNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Asp212Gly)	c.635A>G	Exon 5	Missense	NDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Asp212Glu)	c.636C>G	Exon 5	Missense	NDM	Heterozygous	Dominant	0	Chicago
p.(Leu225_Ser226insThrLysTer)	c.674_675insCACGAAGTAGCA	Exon 5	Nonsense	HI	Heterozygous^Pat	Recessive	0	Odense
p.(Tyr230Cys)	c.689A>G	Exon 5	Missense	HI	Heterozygous^Pat	Recessive	0.0001034	Odense
p.(Ala235Val)	c.704C>T	Exon 5	Missense	NDM	Heterozygous	Not known	0	Exeter
p.(Pro254Leu)	c.761C>T	Exon 5	Missense	HI	Heterozygous^Pat	Recessive	0	Odense
p.(Gln282Ter)	c.844C>T	Exon 6	Nonsense	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Lys329Ter)	c.985A>T	Exon 6	Nonsense	HI	Compound heterozygous	Recessive	0	Exeter
p.?	c.1012–2A>G	Intron 6	Aberrant splicing	HI	Heterozygous/ Heterozygous^Pat	Not known/ Recessive	0	Exeter/ Odense
p.(Glu350Gly)	c.1049A>G	Exon 7	Missense	PNDM	Homozygous	Recessive	0	Exeter
p.(Tyr356Ter)	c.1068C>G	Exon 7	Nonsense	HI	Homozygous	Recessive	0	Exeter
p.(Val360Ala)	c.1079T>C	Exon 7	Missense	TNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Leu362ArgfsTer26)	c.1085del	Exon 7	Frameshift	HI	Homozygous	Recessive	0	Exeter
p.(Leu366Phe)	c.1096C>T	Exon 7	Missense	HI	Heterozygous	Not known	0	Odense
p.(Thr371Ile)	c.1112C>T	Exon 7	Missense	HI	Assumed compound heterozygous with pathogenic variant	Assumed recessive	0.000007953	Paris
p.(Gln374Ter)	c.1120C>T	Exon 7	Nonsense	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Ala380ProfsTer8)	c.1138del	Exon 7	Frameshift	HI	Homozygous	Recessive	0.000003976	Exeter
p.(Gly384Ter)	c.1150_1159del	Exon 7	Nonsense	HI	Homozygous	Recessive	0	Exeter
p.?	c.1332+1G>A	Intron 8	Aberrant splicing	HI	Heterozygous^Pat	Recessive	0	Paris
p.?	c.1332+3A>G	Intron 8	Aberrant splicing	HI	Homozygous	Recessive	0	Exeter
p.?	c.(1332+1_1333–1)_(1671+1_1672–1)dup	Exon 9–11	Duplication	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Val447LeufsTer4)	c.1337_1338dup	Exon 9	Frameshift	HI	Compound heterozygous	Recessive	0	Paris/ Odense
p.?	c.1467+6T>G	Intron 9	Aberrant splicing	HI	Compound heterozygous	Recessive	0	Paris
p.?	c.1468–48G>A	Intron 9	Aberrant splicing	HI	Homozygous	Recessive	0	Exeter
p.(Asn500GlnfsTer122)	c.1497dup	Exon 10	Frameshift	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Gly505Arg)	c.1513G>C	Exon 10	Missense	HI	Heterozygous^denovo /Heterozygous^denovo	Dominant/ Dominant	0	Exeter/ Paris
p.(Phe536Ser)	c.1607T>C	Exon 10	Missense	NDM	Heterozygous^denovo	Dominant	0	Exeter
p.?	c.1631–2A>T	Intron 10	Aberrant splicing	HI	Compound heterozygous	Recessive	0	Paris
p.?	c.1672–20A>T	Intron 11	Aberrant splicing	HI	Homozygous	Recessive	0	Exeter
p.(His562GlnfsTer58)	c.1683_1687del	Exon 12	Frameshift	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Phe577Leu)	c.1731T>G	Exon 12	Missense	TNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Val587Asp)	c.1760T>A	Exon 12	Missense	NDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Ser594Pro)	c.1780T>C	Exon 12	Missense	HI	Heterozygous^Pat	Recessive	0	Odense
p.(Lys609ArgfsTer2)	c.1826_1828delinsGG	Exon 13	Frameshift	HI	Compound heterozygous	Recessive	0	Paris
p.(Glu612Asp)	c.1836G>T	Exon 13	Missense	HI	Heterozygous^Pat	Recessive	0.000007974	Odense
p.?	c.1924–2A>T	Intron 13	Aberrant splicing	HI	Heterozygous^Pat	Recessive	0	Odense
p.(Glu654Ter)	c.1960G>T	Exon 14	Nonsense	HI	Compound heterozygous	Recessive	0	Exeter
p.?	c.2041–2A>G	Intron 14	Aberrant splicing	HI	Heterozygous	Not known	0	Exeter
p.?	c.2041–1G>A	Intron 14	Aberrant splicing	HI	Heterozygous^Pat	Recessive	0	Odense
p.(Arg705Ter)	c.2113C>T	Exon 15	Nonsense	HI	Homozygous	Recessive	0.000003989	Exeter
p.(Gly713Arg)	c.2137G>C	Exon 16	Missense	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Glu729Ter)	c.2185G>T	Exon 16	Nonsense	HI	Heterozygous	Paternal	0	Exeter
p.?	c.2222+1G>A	Intron 16	Aberrant splicing	HI	Homozygous	Recessive	0	Exeter
p.(Glu757Ter)	c.2269G>T	Exon 18	Nonsense	HI	Compound heterozygous	Recessive	0	Exeter
p.(Arg767SerfsTer21)	c.2298_2310delinsAA	Exon 19	Frameshift	HI	Heterozygous^Pat	Recessive	0	Chicago
p.(Gly768ProfsTer23)	c.2301_2302del	Exon 19	Frameshift	HI	Homozygous	Recessive	0	Exeter
p.(Phe794SerfsTer71)	c.2379del	Exon 19	Frameshift	HI	Heterozygous^Pat	Recessive	0	Paris
p.(Tyr799Ter)	c.2397del	Exon 20	Nonsense	HI	Assumed compound heterozygous with pathogenic variant	Assumed recessive	0	Paris
p.(Cys806Tyr)	c.2417G>A	Exon 20	Missense	HI	Homozygous	Recessive	0	Exeter
p.(Asp811Val)	c.2432A>T	Exon 20	Missense	TNDM	Heterozygous	Dominant	0	Chicago
p.(His817Arg)	c.2450A>G	Exon 20	Missense	Later onset diabetes	Heterozygous	Not known	0.00001768	Paris
p.?	c.2479–1G>A	Intron 20	Aberrant splicing	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Gly827AlafsTer38)	c.2480del	Exon 21	Frameshift	HI	Compound heterozygous	Recessive	0	Paris
p.(Arg842GlufsTer23)	c.2524del	Exon 21	Frameshift	HI	Homozygous	Recessive	0	Exeter
p.(Arg842Pro)	c.2525G>C	Exon 21	Missense	HI	Heterozygous^Pat	Recessive	0	Odense
p.?	c.2559+3_2559+15delinsCCTGGGGTCCTTGT	Intron 21	Aberrant splicing	HI	Heterozygous^Pat	Recessive	0	Paris
p.?	c.2560–1G>A	Intron 21	Aberrant splicing	HI	Heterozygous^Pat	Recessive	0	Exeter
p.?	c.(2559+1_2560–1)_(3332+1_3333–1)del	Exons 22–26	Deletion	HI	Compound heterozygous	Recessive	0	Exeter
p.(Gln892Ter)	c.2674C>T	Exon 22	Nonsense	HI	Compound heterozygous	Recessive	0	Exeter
p.(Gln892ProfsTer28)	c.2675_2679del	Exon 22	Frameshift	HI	Homozygous	Recessive	0	Exeter
p.(Gly912Arg)	c.2734G>C	Exon 23	Missense	HI	Compound heterozygous	Recessive	0	Paris
p.(Leu939TrpfsTer104)	c.2815del	Exon 23	Frameshift	HI	Compound heterozygous	Recessive	0	Exeter
p.?	c.2823+1G>A	Intron 23	Aberrant splicing	HI	Homozygous	Recessive	0	Exeter
p.(Glu973ArgfsTer70)	c.2917del	Exon 24	Frameshift	HI	Homozygous	Recessive	0	Exeter
p.(Glu974Gly)	c.2921A>G	Exon 24	Missense	HI	Heterozygous	Dominant	0	Paris
p.?	c.2924–1G>A	Intron 24	Aberrant splicing	HI	Homozygous	Recessive	0.000004162	Exeter
p.?	c.3165+2T>A	Intron 25	Aberrant splicing	HI	Homozygous	Recessive	0	Exeter
p.?	c.3166–1G>A	Intron 25	Aberrant splicing	HI	Homozygous	Recessive	0.000003977	Exeter
p.(Gln1061Ter)	c.3181C>T	Exon 26	Nonsense	HI	Homozygous	Recessive	0	Exeter
p.(Cys1079Ter)	c.3237C>A	Exon 26	Nonsense	HI	Heterozygous	Recessive	0	Exeter
p.(His1098Arg)	c.3293A>G	Exon 26	Missense	HI	Homozygous	Recessive	0	Exeter
p.(Met1110HisfsTer5)	c.3327dup	Exon 26	Frameshift	HI	Heterozygous^Pat	Recessive	0	Odense
p.(Gln1134Ter)	c.3400C>T	Exon 27	Nonsense	HI	Homozygous	Recessive	0	Exeter
p.(Gln1134Arg)	c.3401A>G	Exon 27	Missense	HI	Compound heterozygous	Recessive	0.00001193	Odense
p.?	c.(3402+1_3403–1)_(3653+1_3654–1)del	Exons 28–29	Deletion	HI	Heterozygous	Not known	0	Exeter
p.(Thr1139HisfsTer7)	c.3410_3414dup	Exon 28	Frameshift	HI	Homozygous	Recessive	0	Exeter
p.(Glu1141Ter)	c.3421G>T	Exon 28	Nonsense	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Glu1141Gly)	c.3422A>G	Exon 28	Missense	TNDM	Heterozygous^denovo	Dominant	0	Paris
p.(Cys1150Ter)	c.3450T>A	Exon 28	Nonsense	HI	Heterozygous^Pat	Recessive	0.000003990	Exeter
p.(Ala1153Val)	c.3458C>T	Exon 28	Missense	HI	Heterozygous^denovo	Dominant	0	Exeter
p.(Ala1153Gly)	c.3458C>G	Exon 28	Missense	NDM	Heterozygous	Dominant	0	Exeter
p.(Tyr1181Ter)	c.3543C>A	Exon 28	Nonsense	HI	Homozygous	Recessive	0	Paris
p.(Phe1182Leu)	c.3546C>A	Exon 28	Missense	PNDM/ TNDM	Homozygous/ Heterozygous	Recessive/ Dominant	0	Exeter/ Exeter
p.(Asp1194Val)	c.3581A>T	Exon 29	Missense	HI	Homozygous	Recessive	0.00005303	Odense
p.(Pro1199Ser)	c.3595C>T	Exon 29	Missense	TNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Pro1199Gln)	c.3596C>A	Exon 29	Missense	TNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Leu1201ThrfsTer18)	c.3600_3604del	Exon 29	Frameshift	HI	Heterozygous^Pat	Recessive	0	Odense
p.?	c.3653+2T>A	Intron 29	Aberrant splicing	HI	Homozygous	Recessive	0	Exeter
p.?	c.3757–17_3823del	Intron 30	Aberrant splicing	HI	Homozygous	Recessive	0	Exeter
p.(Glu1253Ter)	c.3757G>T	Exon 31	Nonsense	HI	Homozygous	Recessive	0	Exeter
p.(Ser1267Phe)	c.3800C>T	Exon 31	Missense	NDM	Heterozygous	Dominant	0	Chicago
p.(Leu1276Pro)	c.3827T>C	Exon 31	Missense	Later‐onset diabetes	Heterozygous	Dominant	0	Paris
p.(Leu1283AlafsTer8)	c.3844_3845dup	Exon 31	Frameshift	HI	Heterozygous^Pat	Not known	0	Paris
p.(Tyr1287Ter)	c.3861C>A	Exon 31	Nonsense	HI	Homozygous/ Heterozygous^Pat	Recessive/ Recessive	0	Exeter/ Odense
p.(Met1290Ile)	c.3870G>T	Exon 31	Missense	HI	Assumed compound heterozygous with pathogenic variant	Assumed recessive	0	Paris
p.?	c.3871–2A>G	Intron 31	Aberrant splicing	HI	Homozygous	Recessive	0	Exeter
p.(Leu1295Phe)	c.3883C>T	Exon 32	Missense	PNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Glu1324Ter)	c.3970G>T	Exon 32	Nonsense	HI	Compound heterozygous	Recessive	0	Exeter
p.(Tyr1326Ter)	c.3978del	Exon 32	Nonsense	HI	Compound heterozygous	Recessive	0	Exeter
p.(Glu1327Ter)	c.3979G>T	Exon 32	Nonsense	HI	Homozygous	Recessive	0	Exeter
p.?	c.3991+1G>A	Intron 32	Aberrant splicing	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Ser1333Ter)	c.3998C>A	Exon 33	Nonsense	HI	Heterozygous^denovo	Recessive	0.000003977	Paris
p.(Ile1347Phe)	c.4039A>T	Exon 33	Missense	HI	Compound heterozygous	Recessive	0	Paris
p.(Asn1349SerfsTer5)	c.4045_4061delinsT	Exon 33	Frameshift	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Arg1380Pro)	c.4139G>C	Exon 34	Missense	NDM	Heterozygous	Dominant	0	Exeter
p.(Thr1381Asn)	c.4142C>A	Exon 34	Missense	TNDM	Heterozygous^denovo	Dominant	0	Exeter
p.(Gly1401Trp)	c.4201G>T	Exon 34	Missense	HI	Heterozygous^Pat	Recessive	0	Odense
p.(His1402ThrfsTer59)	c.4203del	Exon 35	Frameshift	HI	Homozygous	Recessive	0	Exeter
p.(Ile1405del)	c.4212_4214del	Exon 35	In frame deletion	HI	Homozygous	Recessive	0	Exeter
p.(Ser1423Pro)	c.4267T>C	Exon 35	Missense	HI	Heterozygous^Pat	Recessive	0	Exeter
p.(Ser1423Cys)	c.4268C>G	Exon 35	Missense	NDM	Heterozygous	Dominant	0	Chicago
p.(Asp1428ArgfsTer6)	c.4282_4298del	Exon 35	Frameshift	HI	Heterozygous^Pat	Recessive	0	Chicago
p.(Pro1429LeufsTer8)	c.4286_4293del	Exon 35	Frameshift	HI	Heterozygous^Pat	Recessive	0	Exeter
p.?	c.4311–1G>T	Intron 35	Aberrant splicing	HI	Compound heterozygous	Recessive	0	Paris
p.(Trp1452Cys)	c.4356G>C	Exon 36	Missense	HI	Compound heterozygous	Recessive	0	Paris
p.?	c.(4414+1_4415–1)_(*4749+34)del	Exons 37–39	Deletion	HI	Compound heterozygous	Recessive	0	Exeter
p.(Gly1485Val)	c.4454G>T	Exon 37	Missense	HI	Heterozygous^denovo	Dominant	0	Chicago
p.(Gln1486Ter)	c.4456C>T	Exon 37	Nonsense	HI	Homozygous	Recessive	0.000003977	Exeter
p.(Gln1488Arg)	c.4463A>G	Exon 37	Missense	HI	Heterozygous^denovo	Dominant	0	Exeter
p.(Cys1491AlafsTer7)	c.4471del	Exon 37	Frameshift	HI	Homozygous	Recessive	0	Paris
p.(Ser1501Arg)	c.4503C>A	Exon 37	Missense	Later‐onset diabetes	Heterozygous	Dominant	0	Exeter
p.(Met1505Thr)	c.4514T>C	Exon 37	Missense	Later‐onset diabetes	Heterozygous	Dominant	0.00001194	Paris
p.(Asp1506Asn)	c.4516G>A	Exon 37	Missense	HI progressed to diabetes	Heterozygous	Dominant	0	Paris
p.(Glu1507_Asp1513dup)	c.4519_4539dup	Exon 37	In frame duplication	HI	Heterozygous	Dominant	0	Chicago
p.?	c.4548+1G>C	Intron 37	Aberrant splicing	HI	Heterozygous^Pat	Recessive	0	Odense
p.(Val1523Met)	c.4567G>A	Exon 38	Missense	Later‐onset diabetes	Heterozygous	Dominant	0	Paris
p.?	c.4611+4A>G	Intron 38	Aberrant splicing	HI	Homozygous	Recessive	0	Paris
p.(Arg1539Ter)	c.4615C>T	Exon 39	Nonsense	HI	Heterozygous^Pat	Recessive	0	Paris
p.(Val1540Met)	c.4618G>A	Exon 39	Missense	TNDM	Heterozygous	Dominant	0	Exeter
p.(Glu1559Ter)	c.4675G>T	Exon 39	Nonsense	HI	Compound heterozygous	Recessive	0	Exeter
p.(Ser1572Arg)	c.4716C>A	Exon 39	Missense	HI	Heterozygous^Pat	Recessive	0	Paris
p.(Arg1579GlnfsTer31)	c.4734_4737del	Exon 39	Frameshift	HI	Compound heterozygous	Recessive	0	Paris

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Abbreviations: HI, hyperinsulinism; NDM, neonatal diabetes; Ter, termination codon; TNDM, transient neonatal diabetes mellitus.

Founder mutations have been identified in many populations with the best recognized example being the ABCC8 p.(Phe1388del) and c.3992‐9G>A mutations present in >90% of cases from the Ashkenazi Jewish population (Nestorowicz et al., 1996; Otonkoski et al., 1999). In the Irish population, a deep intronic ABCC8 founder mutation at position c.1333‐1013G>A has been described that generates a cryptic splice site and causes pseudoexon activation (Flanagan et al., 2013). Founder mutations have also been reported in Hispanic (Aguilar‐Bryan & Bryan, 1999), Bedouin (Tornovsky et al., 2004), Spanish (Fernandez‐Marmiesse et al., 2006), Finnish (Otonkoski et al., 1999), and Turkish populations (Flanagan et al., 2013).

4.2. Common variation in ABCC8 and KCNJ11

Three hundred and sixty‐eight benign/likely benign variants and variants of uncertain significance have been observed in both genes (Tables 2, 3, 4, S2, S3, S5, and S6). Two common variants in linkage disequilibrium, p.(Glu23Lys) in KCNJ11 and p.(Ser1370Ala) in ABCC8, predispose to type 2 diabetes (Florez et al., 2004). Although their effect size is small (odds ratio ~1.2), given that 58% of the population carry at least one lysine allele at residue 23 in KCNJ11, this equates to a sizeable population risk (Gloyn, Weedon, et al., 2003; Nielsen et al., 2003).

Table 2.

Unpublished variants of uncertain clinical significance identified in KCNJ11 (NM_000525.3)

Protein change	Nucleotide position	Mutation type	Phenotype	Zygosity	Inheritance	GnomAD MAF	Reporting laboratory
p.(Arg4His)	c.11G>A	Missense	HI	Heterozygous	Unaffected mother	0.000008066	Exeter
p.(Cys42Tyr)	c.125G>A	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Ala45Ser)	c.133G>T	Missense	Diabetes	Heterozygous	Unaffected parent	0	Exeter
p.(Arg50Trp)	c.148C>T	Missense	Later‐onset diabetes/HI	Heterozygous/ Homozygous/ Heterozygous	Affected parent/ Not known/ Unaffected father	0	Paris/ Paris/ Exeter
p.(Gln52Pro)	c.155A>C	Missense	NDM	Heterozygous	Not known	0	Exeter
p.(Asp58Val)	c.173A>T	Missense	HI	Heterozygous	Unaffected father	0	Paris
p.(Phe60Ser)	c.179T>C	Missense	HI	Heterozygous (in cis with VUS)	Unaffected mother	0	Chicago
p.(Leu84Arg)	c.251T>G	Missense	HI	Homozygous	Bi‐parental	0	Exeter
p.(Ala96Val)	c.287C>T	Missense	HI	Heterozygous	Unaffected father	0	Exeter
p.(His97Tyr)	c.289C>T	Missense	Diabetes	Heterozygous	Unaffected parent	0	Exeter
p.(Ile114Thr)	c.341T>C	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(His115Leu)	c.344A>T	Missense	HI	Heterozygous	Unaffected father	0	Paris
p.(Ser118Leu)	c.353C>T	Missense	Diabetes	Heterozygous/Heterozygous	Not known/ Not known	0.00002389	Paris/ Chicago
p.(Phe121Ser)	c.362T>C	Missense	HI	Heterozygous	Unaffected father	0	Paris
p.(Ile131dup)	c.391_393dup	In‐Frame duplication	HI	Homozygous	Bi‐parental	0	Paris
p.(Ile131Val)	c.391A>G	Missense	HI	Heterozygous	Unaffected father	0	Exeter
p.(Thr139Pro)	c.415A>C	Missense	HI	Heterozygous (in cis with VUS)	Unaffected father	0	Paris
p.(Glu140Lys)	c.418G>A	Missense	HI	Homozygous	Bi‐parental	0	Paris
p.(Cys142Tyr)	c.425G>A	Missense	HI	Heterozygous	Unaffected father	0	Exeter
p.(Val155Leu)	c.463G>T	Missense	HI	Heterozygous	Unaffected mother	0	Exeter
p.(Val155Met)	c.463G>A	Missense	Diabetes	Heterozygous/ Heterozygous	Not known/ Not known	0.00001199	Chicago/ Paris
p.(Leu157Val)	c.469C>G	Missense	HI	Heterozygous	Unaffected mother	0	Exeter
p.(Asn160Lys)	c.480C>G	Missense	HI	Heterozygous	Not known	0	Paris
p.(Ile167Val)	c.499A>G	Missense	HI	Heterozygous (in cis with VUS)	Unaffected father	0	Paris
p.(Thr171Asn)	c.512C>A	Missense	HI	Heterozygous	Unaffected father	0	Exeter
p.(Thr180Ile)	c.539C>T	Missense	HI	Heterozygous	Unaffected father	0	Paris
p.(Ser208Asn)	c.623G>A	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Lys222Gln)	c.664A>C	Missense	HI	Heterozygous	Unaffected mother	0.00001064	Exeter
p.(Ser265Ile)	c.794G>T	Missense	HI	Heterozygous	Unaffected father	0.000003978	Exeter
p.(Tyr268His)	c.802T>C	Missense	HI	Heterozygous	Unaffected father	0	Exeter
p.(Asp274His)	c.820G>C	Missense	HI	Heterozygous	Unaffected father	0	Exeter
p.(Leu287Pro)	c.860T>C	Missense	HI	Heterozygous	Unaffected father	0	Paris
p.(Thr297Asn)	c.890C>A	Missense	NDM	Heterozygous	Unaffected parent	0	Exeter
p.(Ala300Asp)	c.899C>A	Missense	HI	Heterozygous	Not known	0	Paris
p.(Leu310Pro)	c.929T>C	Missense	HI	Heterozygous	Not maternal	0	Exeter
p.(Ile318Val)	c.952A>G	Missense	Diabetes	Heterozygous	Not known (affected sibling also heterozygous)	0.00001061	Paris
p.(Arg325Ser)	c.973C>A	Missense	HI	Heterozygous (in cis with VUS)	Unaffected mother	0.00001591	Chicago
p.(Arg325His)	c.974G>A	Missense	HI	Heterozygous	Unaffected father	0.00001591	Exeter
p.(Thr336Ala)	c.1006A>G	Missense	Diabetes	Heterozygous	Not known	0	Exeter
p.(Leu343Val)	c.1027C>G	Missense	NDM	Heterozygous	Unaffected parent	0	Exeter
p.(Arg369Ser)	c.1105C>A	Missense	Diabetes	Heterozygous	Not known	0.00003988	Paris
p.(Arg369His)	c.1106G>A	Missense	Diabetes	Heterozygous	Unaffected parent	0.000003989	Exeter
p.(Arg369Leu)	c.1106G>T	Missense	HI	Heterozygous	Paternal	0.000003989	Chicago
p.(Ala376Ser)	c.1126G>T	Missense	HI	Heterozygous	Maternal	0	Paris
p.(Pro380_Lys381dup)	c.1138_1143dup	In‐Frame duplication	Diabetes	Heterozygous	Not known	0.00007098	Paris

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Abbreviations: HI, hyperinsulinism; NDM, neonatal diabetes.

Table 4.

Unpublished variants of uncertain clinical significance identified in ABCC8 (NM_001287174.1)

Protein change	Nucleotide position	Position	Mutation type	Phenotype	Zygosity	Inheritance	GnomAD MAF	Reporting laboratory
p.(Ala14Ser)	c.40G>T	Exon 1	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Tyr15Phe)	c.44A>T	Exon 1	Missense	HI	Heterozygous	Not known	0	Paris
p.(Phe41Leu)	c.121T>C	Exon 1	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(His59Asn)	c.175C>A	Exon 2	Missense	HI	Homozygous	Bi‐parental	0	Paris
p.(Gly97=)	c.291G>T	Exon 3	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Val121Met)	c.361G>A	Exon 3	Missense	Diabetes	Heterozygous	Affected parent	0	Paris
p.(Val121Ala)	c.362T>C	Exon 3	Missense	NDM	Heterozygous	Not known	0	Chicago
p.(Ile127Thr)	c.380T>C	Exon 3	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Ile137Ser)	c.410T>G	Exon 3	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.?	c.580–16_580–14del	Intron 4	Intronic deletion	Diabetes	Heterozygous	Not known	0.00001776	Paris
p.(Arg194Lys)	c.581G>A	Exon 5	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Pro201Leu)	c.602C>T	Exon 5	Missense	HI	Heterozygous	Maternal	0	Paris
p.(Ala240Thr)	c.718G>A	Exon 5	Missense	HI	Heterozygous	Maternal	0	Paris
p.(Met257Leu)	c.769A>C	Exon 5	Missense	Diabetes	Heterozygous	Not known	0.000003976	Paris
p.(Met257Thr)	c.770T>C	Exon 5	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Phe270Cys)	c.809T>G	Exon 5	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(His293Pro)	c.878A>C	Exon 6	Missense	HI	Heterozygous	Paternal	0	Chicago
p.(Gly316Glu)	c.947G>A	Exon 6	Missense	HI	Heterozygous	Paternal	0	Chicago
p.(Gly342Arg)	c.1024G>A	Exon 7	Missense	Diabetes	Heterozygous	Not known	0.00001591	Paris
p.(Val357Ile)	c.1069G>A	Exon 7	Missense	HI/ Later‐onset diabetes	Heterozygous/ Heterozygous	Not known/ Not known	0.00003181	Odense/ Paris
p.(Ile395Phe)	c.1183A>T	Exon 8	Missense	NDM	Heterozygous	Not known	0.000007953	Chicago
p.(Thr413Ser)	c.1238C>G	Exon 8	Missense	Diabetes	Heterozygous	Maternal	0	Exeter
p.(Asp424Gly)	c.1271A>G	Exon 9	Missense	PNDM	Homozygous	Recessive	0	Paris
p.(Ile446Thr)	c.1337T>C	Exon 9	Missense	Diabetes	Heterozygous	Not known	0.00001194	Paris
p.(Gly457Arg)	c.1369G>A	Exon 9	Missense	Diabetes	Heterozygous	Affected parent	0.00004598	Paris
p.(Arg504Cys)	c.1510C>T	Exon 10	Missense	Diabetes	Heterozygous	Unaffected parent	0.000007969	Paris
p.(Gly505Cys)	c.1513G>T	Exon 10	Missense	HI	Heterozygous	Paternal	0	Paris
p.(Ala513Thr)	c.1537G>A	Exon 10	Missense	Diabetes	Heterozygous	Unaffected mother	0.00004601	Paris
p.(Arg521Trp)	c.1561C>T	Exon 10	Missense	Diabetes	Heterozygous/ Heterozygous	Not known/ Dominant	0.00002787	Chicago/ Paris
p.(Arg521Gln)	c.1562G>A	Exon 10	Missense	Diabetes	Heterozygous	Not known	0.00009556	Paris
p.(Val522Met)	c.1564G>A	Exon 10	Missense	Diabetes	Heterozygous	Not known	0.000007078	Paris
p.(Ala537Thr)	c.1609G>A	Exon 10	Missense	HI	Heterozygous	Paternal	0	Paris
p.(Val575Met)	c.1723G>A	Exon 12	Missense	Diabetes	Heterozygous	Not known	0.00001591	Paris
p.(Phe613Leu)	c.1837T>C	Exon 13	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.?	c.1924–44A>G	Intron 13	Intronic substitution	HI	Heterozygous	Paternal	0	Odense
p.(Cys656Phe)	c.1967G>T	Exon 14	Missense	Diabetes	Heterozygous	Not known	0.000003984	Paris
p.(Arg702Cys)	c.2104C>T	Exon 15	Missense	Diabetes	Heterozygous	Not known	0.00008768	Paris
p.?	c.2116+61A>G	Intron 15	Intronic substitution	Diabetes	Heterozygous	Not known	0.00003187	Paris
p.(Gln731Glu)	c.2191C>G	Exon 16	Missense	HI	Heterozygous	Not known	0.00001444	Paris
p.(Val770Met)	c.2308G>A	Exon 19	Missense	HI	Assumed compound heterozygous with pathogenic variant	Assumed recessive	0.00002031	Paris
p.(Ser831Thr)	c.2491T>A	Exon 21	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Arg835His)	c.2504G>A	Exon 21	Missense	Diabetes	Heterozygous	Not known	0.00002442	Paris
p.(Ile838Val)	c.2512A>G	Exon 21	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Val840Ala)	c.2519T>C	Exon 21	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Asn849Thr)	c.2546A>C	Exon 21	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(His863Arg)	c.2588A>G	Exon 22	Missense	Diabetes	Heterozygous	Affected parent	0.000007953	Paris/ Exeter
p.(Arg934Gln)	c.2801G>A	Intron 23	Missense	HI	Heterozygous	Paternal	0.00001193	Paris
p.(Ala1002Thr)	c.3004G>A	Exon 25	Missense	HI	Homozygous, in cis with VUS	Recessive	0.00003575	Paris
p.(Ser1019Leu)	c.3056C>T	Exon 25	Missense	Diabetes/HI	Heterozygous/ Compound heterozygous/ Heterozygous	Unknown/ Recessive/ Affected father	0.000008152	Paris
p.(Thr1038Asn)	c.3113C>A	Exon 25	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Val1166Met)	c.3496G>A	Exon 28	Missense	Diabetes	Compound heterozygous/ Heterozygous	Recessive/ Dominant	0.00008843	Chicago/ Paris
p.?	c.3561–19A>C	Intron 28	Intronic substitution	HI	Heterozygous	Not known	0	Chicago
p.(Asp1194Val)	c.3581A>T	Exon 29	Missense	Diabetes	Heterozygous	Not known	0.00005303	Paris
p.(Glu1209Lys)	c.3625G>A	Exon 29	Missense	HI	Heterozygous	Affected grandparent	0	Paris
p.(Phe1217Leu)	c.3651C>G	Exon 29	Missense	TNDM	Heterozygous	Unaffected parent	0	Paris
p.?	c.3653+4C>G	Intron 29	Intronic substitution	Later‐onset diabetes/HI	Heterozygous/ Heterozygous	Affected parent/ Not known	0.0001449	Paris/ Exeter
p.(Leu1241Arg)	c.3722T>G	Exon 30	Missense	HI	Heterozygous	Paternal	0	Paris
p.(Glu1249Ala)	c.3746A>C	Exon 30	Missense	HI	Heterozygous	Affected mother	0	Paris
p.(Glu1253Gly)	c.3758A>G	Exon 31	Missense	HI	Heterozygous	Maternal	0	Chicago
p.(Val1260Met)	c.3778G>A	Exon 31	Missense	Diabetes	Heterozygous	Affected parent	0.00005321	Paris
p.?	c.3992–10C>T	Intron 32	Intronic substitution	HI	Heterozygous	Maternal	0.0004177	Odense
p.?	c.4123–17T>C	Intron 33	Intronic substitution	Diabetes	Heterozygous	Not known	0	Chicago
p.(Ser1423Phe)	c.4268C>T	Exon 35	Missense	HI	Compound heterozygous with VUS	Recessive	0	Paris
p.(Gln1427Lys)	c.4279C>A	Exon 35	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Asn1439=)	c.4317C>T	Exon 36	Synonymous	HI	Compound heterozygous	Recessive	0.00001458	Paris
p.(Pro1442Leu)	c.4325C>T	Exon 36	Missense	HI	Homozygous, in cis with VUS	Recessive	0	Paris
p.(Gly1478=)	c.4434C>T	Exon 37	Synonymous	HI	Heterozygous	Not known	0.0001697	Chicago
p.(Ala1495=)	c.4485C>T	Exon 37	Synonymous	HI	Heterozygous	Not known	0.0002228	Chicago
p.(Val1497Met)	c.4489G>A	Exon 37	Missense	HI	Heterozygous/ Heterozygous	Paternal/ Paternal	0.000007957	Paris/ Odense
p.(Ile1504Asn)	c.4511T>A	Exon 37	Missense	Diabetes	Heterozygous	Not known	0	Paris
p.(Arg1531His)	c.4592G>A	Exon 38	Missense	Diabetes	Heterozygous	Not known	0.00001061	Chicago
p.(Val1534Leu)	c.4600G>C	Exon 38	Missense	Diabetes	Heterozygous	Unaffected parent	0	Paris
p.(Ser1576Pro)	c.4726T>C	Exon 39	Missense	HI	Compound heterozygous	Recessive	0	Paris
p.(Arg1579His)	c.4736G>A	Exon 39	Missense	Diabetes	Heterozygous	Not known	0.00004952	Paris

Open in a new tab

Note: The Phenotype column highlights a new phenotype; the reporting laboratory column indicates which laboratory identified the variant in patient with the new phenotype. See Supporting Information data for details of inclusion criteria for variants in this table.

Abbreviations: HI, hyperinsulinism; NDM, neonatal diabetes; TNDM, transient neonatal diabetes mellitus.

4.3. Variant interpretation

Given the highly polymorphic nature of ABCC8 and KCNJ11, the occurrence of both activating and inactivating mutations, the multiple modes of inheritance of disease, and the variable penetrance associated with dominantly acting mutations, interpreting variants identified in these genes can be extremely challenging. Although the identification of a null ABCC8 or KCNJ11 variant(s) in an individual with CHI provides strong evidence for pathogenicity, finding a missense variant is insufficient to assign disease causality and, as such, additional support is required to achieve a “pathogenic” classification according to the guidelines set out by the American College of Medical Genetics (Richards et al., 2015).

Large variant databases such as GnomAD and LOVD are powerful tools that aid in variant interpretation and allow for reclassification of variants (Fokkema et al., 2011; Lek et al., 2016). As such, some variants previously reported as pathogenic in the literature have now been found to be too common to be causative of disease and have now be reassigned as a variant of uncertain significance or a benign variant (Tables S2, S3, S5, and S6).

5. FUTURE PROSPECTS

Although sulphonylureas provide a safe and effective treatment for the majority of individuals with K_ATP channel NDM, for patients with CHI, pharmacological management of the condition is not always successful. Current efforts are, therefore, focusing on the development of new pharmacological treatments for this condition (Banerjee, De Leon, & Dunne, 2017; De Leon et al., 2008; Ng, Tang, Seeholzer, Zou, & De Leon, 2018; Patel et al., 2018; Powell et al., 2011; Senniappan et al., 2014).

Progress is also being made in terms of genetic screening, with a recent report describing the use of noninvasive prenatal testing of a paternally inherited KCNJ11 activating mutation in cell‐free fetal DNA (De Franco et al., 2017). Implementation of noninvasive prenatal testing for maternally inherited mutations will be extremely important, as a previous study suggested that sulphonylurea can cross the placenta and influence fetal growth with implications for treatment of monogenic diabetes pregnancies (Myngheer et al., 2014; Shepherd, Brook, Chakera, & Hattersley, 2017).

6. SUMMARY

The discovery of both inactivating and activating K_ATP channel mutations has firmly established the critical role of the channel in insulin secretion. The highly polymorphic nature of the two genes along with the occurrence of both gain‐of‐function and loss‐of‐function mutations as well as multiple different modes of inheritance can make variant interpretation extremely challenging. Rapid testing is absolutely crucial for all patients with CHI or NDM because finding a mutation has a huge impact on the clinical management of these conditions.

Supporting information

Click here for additional data file.^{(2.9MB, DOCX)}

ACKNOWLEDGMENTS

The authors thank the clinicians who have referred patients for genetic testing to the contributing screening laboratories. SEF has a Sir Henry Dale Fellowship jointly funded by the Wellcome Trust and the Royal Society (Grant Number: 105636/Z/14/Z). EDF has an EFSD Rising Star Fellowship funded by EFSD and Novo Nordisk. SE is a Wellcome Trust Senior Investigator (WT098395/Z/12/Z). PB has a Sir George Alberti Clinical Research Training Fellowship funded by Diabetes UK (Grant Number 16/0005407). Relevant funding for SAWG includes National Institutes of Health (NIH) award numbers P30 DK020595, K23 DK094866, R03 DK103096, R01 DK104942, and UL1 TR000430, as well as by grants from the American Diabetes Association (1‐11‐CT‐41 and 1‐17‐JDF‐008) and gifts from the Kovler Family Foundation.

De Franco E, Saint‐Martin C, Brusgaard K, et al. Update of variants identified in the pancreatic β‐cell K_ATP channel genes KCNJ11 and ABCC8 in individuals with congenital hyperinsulinism and diabetes. Human Mutation. 2020;41:884–905. 10.1002/humu.23995

DATA AVAILABILITY STATEMENT

All the novel variants reported in this manuscript have been uploaded to LOVD (https://www.lovd.nl/).

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Supporting information

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Data Availability Statement

All the novel variants reported in this manuscript have been uploaded to LOVD (https://www.lovd.nl/).

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PERMALINK

Update of variants identified in the pancreatic β‐cell KATP channel genes KCNJ11 and ABCC8 in individuals with congenital hyperinsulinism and diabetes

Elisa De Franco

Cécile Saint‐Martin

Klaus Brusgaard

Amy E Knight Johnson

Lydia Aguilar‐Bryan

Pamela Bowman

Jean‐Baptiste Arnoux

Annette Rønholt Larsen

May Sanyoura

Siri Atma W Greeley

Raúl Calzada‐León

Bradley Harman

Jayne A L Houghton

Elisa Nishimura‐Meguro

Thomas W Laver

Sian Ellard

Daniela del Gaudio

Henrik Thybo Christesen

Christine Bellanné‐Chantelot

Sarah E Flanagan

Abstract

1. INTRODUCTION

Figure 1.

2. CONGENITAL HYPERINSULINISM

2.1. CHI due to KATP channel mutations

2.2. Clinical management of KATP channel CHI

3. DIABETES MELLITUS

3.1. Later‐onset diabetes due to KATP channel mutations

3.2. Neonatal diabetes due to KATP channel mutations

3.3. Spectrum of central nervous system features in KATP channel NDM

3.4. Clinical management of neonatal diabetes and CNS features due to KATP channel mutations

4. GENETIC VARIATION IN ABCC8 AND KCNJ11

4.1. Disease‐causing variants

Table 1.

Table 3.

4.2. Common variation in ABCC8 and KCNJ11

Table 2.

Table 4.

4.3. Variant interpretation

5. FUTURE PROSPECTS

6. SUMMARY

Supporting information

ACKNOWLEDGMENTS

DATA AVAILABILITY STATEMENT

REFERENCES

Associated Data

Supplementary Materials

Data Availability Statement

ACTIONS

PERMALINK

RESOURCES

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Links to NCBI Databases

Update of variants identified in the pancreatic β‐cell K_ATP channel genes KCNJ11 and ABCC8 in individuals with congenital hyperinsulinism and diabetes

2.1. CHI due to K_ATP channel mutations

2.2. Clinical management of K_ATP channel CHI

3.1. Later‐onset diabetes due to K_ATP channel mutations

3.2. Neonatal diabetes due to K_ATP channel mutations

3.3. Spectrum of central nervous system features in K_ATP channel NDM

3.4. Clinical management of neonatal diabetes and CNS features due to K_ATP channel mutations