Cryo-EM data collection, refinement and validation statistics | ||
---|---|---|
Class-1 (open) (EMDB-21529) (PDB 6W2S) |
Class-2 (closed) (EMDB-21530) (PDB 6W2T) |
|
Data collection and processing | ||
Magnification Voltage (kV) Electron exposure (e–/Å2) Defocus range (μm) Pixel size (Å) Symmetry imposed Initial particle images (no.) |
130,000 300 59.55 −1 /– 3 1.06 C1 915,647 |
|
Final particle images (no.) | 14,257 | 23,444 |
Map resolution (Å) FSC threshold |
3.3 0.143 |
3.3 0.143 |
Map resolution range (Å) | 3–8 | 3–8 |
Refinement | ||
Initial model used (PDB code) | 5A2Q | 5A2Q |
Model resolution (Å) FSC threshold |
3.6 0.5 |
3.6 0.5 |
Model resolution range (Å) | 3.3–8 | 3.3–8 |
Map sharpening B factor (Å2) | −31.94 | −43.41 |
Model composition Non-hydrogen atoms Ligands |
106,817 - |
109,684 - |
B factors (Å2) Protein RNA |
92.47 114.1 |
96.5 117.4 |
R.m.s. deviations Bond lengths (Å) Bond angles (°) |
0.014 1.77 |
0.014 1.78 |
Validation MolProbity score Clashscore Poor rotamers (%) |
2.12 6.13 1.62 |
1.99 4.92 1.39 |
Ramachandran plot Favored (%) Allowed (%) Disallowed (%) RNA validation Angles outliers (%) Sugar puckers outliers (%) Average suit |
88.92 98.37 1.63 0.18 2.35 0.442 |
90.25 98.50 1.50 0.17 2.25 0.428 |