KEY RESOURCES TABLES

REAGENT or RESOURCE	SOURCE	IDENTIFIER
SNV & INDEL dataset	ICGC data portal	https://dcc.icgc.org/releases/PCAWG/consensus_snv_indel
SV dataset	ICGC data portal	https://dcc.icgc.org/releases/PCAWG/consensus_sv
Subclonal reconstruction	ICGC data portal	https://dcc.icgc.org/releases/PCAWG/subclonal_reconstruction
Driver mutations	ICGC data portal	https://dcc.icgc.org/releases/PCAWG/driver_mutations
Gene expression	ICGC data portal	https://dcc.icgc.org/releases/PCAWG/transcriptome/gene_expression
Mutation signatures	PCAWG synapse page	https://www.synapse.org/#!Synapse:syn11738306
Driver elements	PCAWG driver paper	biorxiv pcawg driver elemnts
SNV funseq output	PCAWG synapse page	https://www.synapse.org/#!Synapse:syn15574565
SNV ALoFT output	PCAWG synapse page	https://www.synapse.org/#!Synapse:syn12176699
Weak drivers	Passenger resource webpage	http://pcawg.gersteinlab.org/Datasets/Derived/weakDriver/weak_drivers_95_CI_cutoff.xlsx
Software and Algorithms
FunSeq2	Gerstein lab Github	https://github.com/gersteinlab/FunSea2
ALoFT	Gerstein lab Github	https://github.com/gersteinlab/aloft
Additive variance analysis code	Gerstein lab Github	https://github.com/gersteinlab/pcawgAdditiveVariance
Other
Derived resource files	Passenger resource webpage	http://pcawg.gersteinlab.org