The content is available as a PDF (1.3 MB).
Electronic supplementary material
Supplementary material, approximately 126 KB.
Table S1 SLA I alleles in the three-way crossbred (Landrace, Duroc, and Yorkshire) pigs
Table S2 supertype, subtype and amino acid motif for all alleles.
Table S2 The new SLA I alleles in supertypes A, B, C, D
Table S4 CTL epitope peptides in the P72 protein of ASFV corresponding amino acid motifs of SLA I in the supertype B.
Acknowledgements
This work was financed by the National Key R&D Program of China (2017YFD0502302) and National 12th Five-Year Plan Science and Technology Support Project (2015BAD12B01-06).
Compliance and ethics The author(s) declare that they have no conflict of interest.
Contributor Information
Jin Xiao, Email: xjpeptide@126.com.
Changyuan Yu, Email: yucy@mail.buct.edu.cn.
References
- Fan S, Wang Y, Wang S, Wang X, Wu Y, Li Z, Zhang N, Xia C. Polymorphism and peptide-binding specificities of porcine major histocompatibility complex (MHC) class I molecules. Mol Immunol. 2018;93:236–245. doi: 10.1016/j.molimm.2017.06.024. [DOI] [PubMed] [Google Scholar]
- Fan S, Wu Y, Wang S, Wang Z, Jiang B, Liu Y, Liang R, Zhou W, Zhang N, Xia C. Structural and biochemical analyses of swine major histocompatibility complex class I complexes and prediction of the epitope map of important influenza a virus strains. J Virol. 2016;90:6625–6641. doi: 10.1128/JVI.00119-16. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kollnberger SD, Gutierrez-Castañeda B, Foster-Cuevas M, Corteyn A, Parkhouse RME. Identification of the principal serological immunodeterminants of African swine fever virus by screening a virus cDNA library with antibody. J Gen Virol. 2002;83:1331–1342. doi: 10.1099/0022-1317-83-6-1331. [DOI] [PubMed] [Google Scholar]
- Macdonald IK, Harkiolaki M, Hunt L, Connelley T, Carroll AV, MacHugh ND, Graham SP, Jones EY, Morrison WI F D R, et al. MHC class I bound to an immunodominant Theileria parva epitope demonstrates unconventional presentation to T cell receptors. PLoS Pathog. 2010;6:1001149. doi: 10.1371/journal.ppat.1001149. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Oura CAL, Denyer MS, Takamatsu H, Parkhouse RME. In vivo depletion of CD8+ T lymphocytes abrogates protective immunity to African swine fever virus. J Gen Virol. 2005;86:2445–2450. doi: 10.1099/vir.0.81038-0. [DOI] [PubMed] [Google Scholar]
- Smith DM, Lunney JK, Martens GW, Ando A, Lee JH, Ho CS, Schook L, Renard C, Chardon P. Nomenclature for factors of the SLA class-I system, 2004. Tissue Antigens. 2005;65:136–149. doi: 10.1111/j.1399-0039.2005.00337.x. [DOI] [PubMed] [Google Scholar]
- Thomsen M, Lundegaard C, Buus S, Lund O, Nielsen M. MHCcluster, a method for functional clustering of MHC molecules. Immunogenetics. 2013;65:655–665. doi: 10.1007/s00251-013-0714-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zhang N, Qi J, Feng S, Gao F, Liu J, Pan X, Chen R, Li Q, Chen Z, Li X, et al. Crystal structure of swine major histocompatibility complex class I SLA-1*0401 and identification of 2009 pandemic swine-origin influenza A H1N1 virus cytotoxic T lymphocyte epitope peptides. J Virol. 2011;85:11709–11724. doi: 10.1128/JVI.05040-11. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Supplementary material, approximately 126 KB.
Table S1 SLA I alleles in the three-way crossbred (Landrace, Duroc, and Yorkshire) pigs
Table S2 supertype, subtype and amino acid motif for all alleles.
Table S2 The new SLA I alleles in supertypes A, B, C, D
Table S4 CTL epitope peptides in the P72 protein of ASFV corresponding amino acid motifs of SLA I in the supertype B.