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. 2019 Nov 18;5:139–149. doi: 10.3114/fuse.2020.05.09

Phylogenetic placement and lectotypification of Pseudotryblidium neesii (Helotiales, Leotiomycetes)

A Suija 1,*, M Haldeman 2, E Zimmermann 3, U Braun 4, P Diederich 5
PMCID: PMC7250013  PMID: 32467920

Abstract

A phylogenetic analysis of combined rDNA LSU and ITS sequence data was carried out to determine the phylogenetic placement of specimens identified as Pseudotryblidium neesii. The species forms a distinct clade within Dermateaceae (Helotiales, Leotiomycetes) with Rhizodermea veluwiensis and two Dermea species. The geographical distribution of this species, previously known only from Europe on Abies alba, is extended to north-western North America where it grows exclusively on A. grandis. The name P. neesii is lectotypified in order to disentangle the complicated nomenclature of the species. A new, detailed description of P. neesii with illustrations is provided after comparison of sequenced specimens with the type material. Furthermore, the new combination Pseudographis rufonigra (basionym Peziza rufonigra) is made for a fungus previously known as Pseudographis pinicola.

Keywords: Abies alba, A. grandis, Dermea, Dermateaceae, nomenclature, phylogeny, Pseudographis

INTRODUCTION

Pseudotryblidium neesii is a non-lichenized and non-lichenicolous helotialean ascomycete that specifically inhabits bark of Abies species (Rehm 1890, Hafellner 2009, Zimmermann 2011). However, it can easily be mistaken for a lichenicolous fungus because the ascomata often break through the thalli of corticolous crustose lichens such as Loxospora elatina and Phlyctis argena (e.g. Lindsay 1869, van den Boom & Breuss 2002, Hafellner 2009). The species is widespread in Central Europe, with gaps in its distribution probably due to undercollecting. The species was unknown outside of Europe until one of the authors (MH) collected it in Idaho, Montana and Washington (USA), these specimens originally considered as an unknown lichenicolous fungus growing on crustose lichens (Ochrolechia species and Pertusaria carneopallida). As the material was morphologically similar to Pseudotryblidium neesii, we compared internal transcribed spacer (ITS) sequences of North American and European specimens to confirm the morphology-based identification.

For a long time, the phylogenetic position of Pseudotryblidium has remained unsettled. Rehm (1890), followed by Boudier (1907), considered Pseudotryblidium as belonging to Patellariaceae, while in later classifications it was included in Helotiales incertae sedis (e.g. Nannfeldt 1932, Jaklitsch et al. 2016). We tested the phylogenetic affiliation of this monotypic genus by using two gene loci to identify the position of this fungus within Helotiales. As the nomenclature of Pseudotryblidium neesii was rather confusing, we have restudied this problem and lectotypify the name.

MATERIALS AND METHODS

Study of specimens

The examined specimens are deposited in BG, CWU, G, HAL, H, OSC, TU and W and in the private herbaria of P. Diederich, M. Haldeman and E. Zimmermann. External morphology was examined using a Leica MZ 7.5 dissecting microscope. Macroscopic photographs were taken using a Canon 40D camera with a Nikon BD Plan 10 microscope objective, StackShot (Cognisys) and Helicon Focus (HeliconSoft) for increasing the depth of field. Microscopic structures were studied using hand-cut sections in water; colour reactions were observed using 5 % KOH (K); Lugol’s reagent, both with (K/I) and without (I) pretreatment with K, and Melzer’s reagent were used to examine the ascus apical apparatus. Microscopic photographs were prepared using a Leica DMLB microscope with DIC, a Leica EC3 camera and Helicon Focus.

DNA extraction, PCR amplification and DNA sequencing

Genomic DNA was extracted from ascomata of Pseudotryblidium neesii collected from Switzerland (four specimens) and North America (three), plus from four specimens belonging to the genus Dermea (Table 1). DNA extraction was performed using High Pure PCR Template Preparation Kit (Roche Applied Science®) and following the protocol provided by the manufacturer with minor modifications. We amplified the internal transcribed spacer (ITS) using primer pairs ITS0F and LA-W (Tedersoo et al. 2008), and the large subunit ribosomal RNA gene (LSU) using LR0R and LR7 (Hopple & Vilgalys 1994). The PCR reaction mix (25 μL) consisted of 5 μL 5× HOT FIREPol Blend Master Mix (Solis BioDyne, Tartu, Estonia), 0.5 μL of both primers (all 20 µM), 3–5 μL of target-DNA and the rest of distilled water. The temperatures and time for each cycle of polymerase chain reaction (PCR) were as follows: denaturation was set 95 °C for 30 s, annealing 57 °C 30 s and extension 72 °C 60 s. In total 36 cycles were run. The PCR products were visualized on a 1 % agarose gel stained with ethidium bromide, and for the purification of PCR products, 1 μL of FastAP and 0.5 μL of Exonuclease I (Thermo Scientific, Waltham, Massachusetts, USA) were added to each tube per 20 μL of the product. Both complementary strands were sequenced in Macrogen Inc. (Amsterdam, the Netherlands) with primers ITS4 and ITS5 (White et al. 1990) and CTB6 (Garbelotto et al. 1997) and LR7. Sequencher v. 4.10.1. (GeneCodes Corp.®, Ann Arbor, MI, USA) was used to check, assemble and manually adjust the resulting sequence fragments. The consensus sequences were compared with those publicly available in NCBI (https://www.ncbi.nlm.nih.gov) and UNITE (https://unite.ut.ee) databases using blastn (Altschul et al. 1990) comparison. The ITS sequences of North American and European specimens (two and four respectively) were compared using SeaView v. 4.6 software (Gouy et al. 2010).

Table 1.

NCBI accession numbers of sequences used in molecular phylogenetic analyses. Entries in bold (with voucher and lab codes) are newly generated for this study. Detailed information about these vouchers is provided under Specimens examined. ‘na’ indicates information not available.

Species name Voucher / Lab code LSU acc. no. ITS acc. no
Coleophoma caliginosa GU973598 KR859090
Cryptosporiopsis sp. GU973599 GU973506
Derived acerina DQ2478011 AF141164
Dermea acerina MH867440 MH855942
Dermea acerina TU104990 / DE364 MK894288 MK894299
Dermea balsamea MH871804 na
Dermea bicolor MH867659 na
Dermea cerasi JN086690 JN033387
Dermea cerasi MH870721 MH854868
Dermea cerasi TU104988 / DE367 MK894290 MK894301
Dermea cerasi TU104987 / DE368 MK894291 MK894302
Dermea hamamelidis MH867660 AF141157
Dermea libocedri MH867661 MH856142
Dermea molliuscula MH868355 MH856839
Dermea molliuscula MH867662 na
Dermea padi MH867663 na
Dermea persica MH104720 MH104719
Dermea piceina MH867664 MH855942
Dermea pinicola MH867665 MH856144
Dermea prunastri MH867666 na
Dermea tulasnei MH867667 MH856145
Dermea sp. TU104991 / DE369 MK894289 MK894300
Fabrella tsugae AF356694 U92304
Fungal endophyte isolate 4073 DQ979436 DQ979592
Fungal endophyte isolate 4510 DQ979445 DQ979647
Glutinomyces inflatus LC189052 LC218289
Helotiales sp. JX507673 JX507672
Helotiales sp. JX535103 JX535102
Monilinia laxa MH868237 MH856718
Neofabraea illicii KF137617 KF137635
Neofabraea sp. KF137612 KF137630
Neofabraea sp. KF137619 KF137633
Parafabraea eucalypti GQ303310 KR859091
Pezicula californiae GU973597 GU973504
Pezicula corylina KR858959 KR859167
Pezicula frangulae GU973600 KR859208
Pezicula heterochroma KR859002 KR859210
Pezicula neocinnamomea KR859007 KR859215
Pezicula radicicola KR859028 KR859236
Pezicula rubi KR859039 KR859247
Phlyctema vagabunda KR859069 KR859275
Polyphilus sieberi MG719706 na
Polyphilus sieberi MG719704 na
Polyphilus sieberi MG719703 na
Pseudofabraea citricarpa KR859075 na
Pseudotryblidium neesii TU86401 / HE299 MK894285 MK894292
Pseudotryblidium neesii TU86402 / HE300 MK894286 MK894293
Pseudotryblidium neesii TU86400 / HE301 MK894284 na
Pseudotryblidium neesii Zimmermann M274 / PS337 na MK894295
Pseudotryblidium neesii Zimmermann M271 / PS338 MK894287 MK894298
Pseudotryblidium neesii Zimmermann M273 / PS339 na MK894297
Pseudotryblidium neesii Zimmermann M272 / PS340 na MK894296
Rhizodermea veluwiensis KR859076 HM002555

Phylogenetic analyses

The closest match of rDNA ITS and LSU sequences belonged to Dermateaceae (Helotiales) according to blastn comparisons of DNA sequences. Following that, we compiled separate alignments for ITS and LSU sequences including newly generated (eight LSU and ten ITS) and NCBI downloaded (Table 1) sequences. In all alignments, Fabrella tsugae (Cenangiaceae) and Monilinia laxa (Sclerotiniaceae) were chosen to root phylogenetic trees.

ITSx (Bengtsson-Palme et al. 2013) was used for extraction of neighbouring parts of conservative rDNA regions in the ITS alignment. The matrix of newly generated and obtained sequences was aligned using MUSCLE (Edgar 2004) with default options and checked visually and corrected manually with SeaView v. 4.6 (Gouy et al. 2010). The online version of Gblocks v. 0.91b (Talavera & Castreana 2007) run at http://molevol.cmima.csic.es/castresana/Gblocks_server.html was used to eliminate poorly aligned positions and divergent regions of the LSU alignment but allowing smaller final blocks and gap positions within the final blocks. The resulting ITS (44 sequences) alignment consisted of 514 nucleotide positions, of which 156 variable (37.8 %) and 128 (31 %) informative, and the LSU (50) alignment of 819 nucleotide positions, of which 124 variable (23.3 %) and 86 (16.1 %) informative.

Both DNA regions were analysed separately, then combined to LSU + ITS matrix, as no obvious topological conflict was found in statistically supported clades (posterior probabilities (PP) ≥ 0.95 and bootstrap values (BS) ≥ 75 %; data not shown). DNA alignments were analysed using Maximum Likelihood (ML) applied with RAxML v. 8.2.10 (Stamatakis et al. 2008) and Bayesian Markov Chain Monte Carlo (MCMC, later BI) applied with MrBayes v. 3.2.6. (Ronquist et al. 2012) methods. Except BI of the combined LSU + ITS alignment, the rest of the analyses were implemented at the CIPRES Science Gateway v. 3.3 (Miller et al. 2010). The best-fit nucleotide substitution model according to the lowest value of AIC criterion calculated over 56 possible models using jModeltest v. 2.1.6. (Darriba et al. 2012) was TIM3 + I + G for LSU and GTR + I+ G for ITS. The data was partitioned accordingly in the two-marker analysis. For all BI analyses, two parallel simultaneous runs with four-chains run starting from the random tree were applied. The number of generations (ngen) for single marker analyses was set 2 000 000 and for two-marker analysis 9 000 000. Samplefreq and printfreq were set to 500 and diagnfreq 2 000. The analyses were run until the convergence of the chains was confirmed by the standard deviation of split frequencies that reached below 0.01. Moreover, the potential scale reduction factor (PSRF) for all models and factors of combined analysis remained below 1.008. The first 25 % of saved data was discarded as ‘burn-in’; a 50 % majority-rule consensus tree and posterior probabilities (PP) were calculated from the rest.

The nucleotide substitution model for ML was set GTR + G. Branch support was provided by bootstrap analysis (1 000 pseudoreplicates), and all other parameters were set to default values. The phylogenetic trees were visualised and edited using FigTree v. 1.4.4 (Rambaut et al. 2014), and Adobe Illustrator CS3® was used for artwork. The alignment files used for the analyses is available in TreeBASE repository under reference number TB25257 (http://purl.org/phylo/treebase/phylows/study/TB2:S25257).

RESULTS

European and North American populations

The one-by-one comparison of ITS sequences supported the morphology-based identification that North American specimens belong to Pseudotryblidium neesii. The variability of the ITS alignment of six sequences (470 bp), two from North American and four from European specimens, is 1.1 %, i.e. five informative nucleotide positions. These single nucleotide mutations (SNP) do not correspond to the geographical origin of the material (see file in TreeBASE repositiory under reference number TB25257).

In total we saw 15 collections of P. neesii from Idaho, Montana, Oregon and Washington, all made exclusively on Abies grandis. One of us (MH) inspected many A. lasiocarpa trees, as well as other conifers in Idaho, but did not find P. neesii on those substrates. The examined European material was exclusively growing on A. alba.

Phylogenetic position of Pseudotryblidium

The ITS, LSU and combined LSU + ITS based Maximum Likelihood (ML) and Bayesian trees had no topological conflicts in the supported clades (Fig. 1), all indicating the placement of Pseudotryblidium neesii within the family Dermateaceae, Helotiales (PP = 1; BS = 99). However, the internal relationships between larger clades within the Dermateaceae clade remained unsupported.

Fig. 1.

Fig. 1.

The rDNA LSU + ITS based Bayesian phylogeny showing the position of Pseudotryblidium neesii (yellow box) within Dermateaceae. The branches with posterior probabilities (PP) ≥ 0.95 and bootstrap values (BS) ≥ 75 % are considered as supported. GenBank accession numbers are at the tips of the tree.

In all analyses, the genus Dermea was paraphyletic. The core group of Dermea species including the type species D. cerasi formed a well-supported clade (PP = 1, BS = 82 %; Fig. 1), while Pseudotryblidium neesii together with Dermea piceina, D. acerina and Rhizodermea veluwiensis formed a distinct though unsupported clade within Dermateaceae. Dermea balsamea was distant from the core of the Dermea-clade and proved to be close to Polyphilus sieberi (Hyaloscyphaceae, Helotiales).

Nomenclature and taxonomy

The nomenclature of Pseudotryblidium neesii is intricate and confusing. Nees (1836) introduced the name Peziza lecanorae, which is a younger homonym of Peziza lecanora J.C. Schmidt & Kunze, 1817. The two epithets are confusable (see Art. 53.2) and had been regarded as homonyms by Flotow (in Rabenhorst, Klotzschii Herb. Viv. Mycol., Cent. 15: no. 1419, 1850), who introduced the replacement name Peziza neesii Flot., which is, however, a homonym as well (non Peziza neesii Saut., 1841). Körber (1865) intended to introduce a new combination [“Leciographa neesii (Flot.) Körb.”], based on Peziza neesii Flot., but an illegitimate name cannot be used as a basionym (Art. 6.10). Therefore, Leciographa neesii would represent a name only ascribable to Körber, either as a replacement name based on Peziza neesii Flot. with the same type as this illegitimate name or as a name of a new taxon with a different type (Art. 58.1, and Ex. 1). However, Leciographa neesii is also an illegitimate name, according to Art. 52.1 (nom. superfl.), because Körber (1865) cited Leciographa zwackhii Massal. (“Cat. Graph. 6792”), a species validated by Zwackh (1862: 571), as a synonym. Names illegitimate by being superfluous, according to Art. 52.1, are automatically typified by the types of the names that ought to have been adopted. Therefore, Körber’s (l.c.) name is formally a homotypic synonym of Phaeographa zwackhii (Massal. ex Zwackh) Hafellner (≡ Leciographa zwackhii Massal. ex Zwackh) and has to be regarded as a misapplied name in the context of Pseudotryblidium neesii. Arnold (1874) introduced Dactylospora neesii, intended to be a new combination based on Peziza neesii Flot., which is, however, de facto a new name only attributable to Arnold (according to Art. 58.1, and Ex. 1), either as a replacement name based on Peziza neesii Flot. with the same type as this illegitimate name or as a name of a new taxon with a different type. Arnold (l.c.) referred to several previously published descriptions and cited several examined exsiccatae, including Körber, Lich. Sel. Germ. 420, but he realized that Leciographa zwackhii and L. neesii represent two different species and excluded L. zwackhii from the synonymy of L. neesii, which he reallocated to Dactylospora. In any case, Dactylospora neesii represents the first valid name for the species concerned.

Original material of the name Peziza lecanorae Nees (1836), non Peziza lecanora J.C. Schmidt & Kunze, 1817, available for lectotypification purposes (Art. 9.3, 9.4), could not be traced and is probably not preserved, although it would be necessary if Dactylospora neesii would be considered a replacement name for Peziza neesii Flot. In order to disentangle the complicated nomenclature of Pseudotryblidium neesii and to stabilize the application of this name, we prefer to use the second option and treat D. neesii as the name of a new taxon with a new type (according to Art. 58.1). “Körber, Lich. Sel. Germ. 420” was cited in Arnold (1874) in the protologue of D. neesii and represents syntype material. A duplicate of this exsiccata deposited at herb. H is designated here as lectotype.

Peziza rufonigra Saut. (Sauter 1841) is another name that has been considered a synonym of Pseudotryblidium neesii (Keissler 1916). We re-examined three specimens in W collected by Sauter and annotated as Peziza rufonigra by him. Two of them (from Tauern) have been studied by Keissler (1916) and annotated as Pseudotryblidium neesii. The third specimen (no. 1217) has been annotated by Keissler as “P. n. versimiliter”, thus only doubtfully the same species. It is therefore clear that the two first specimens (nos. 1238 and 1276) could be used for a lectotypification of the name Peziza rufonigra, both macroscopically and microscopically very similar to each other and possibly duplicates from the same collection. The two specimens (1238 and 1276) do not resemble Pseudotryblidium neesii: the ascomata are not roundish, but elongate; the ascomatal margin is not striate; the ascomata are black and not brown; the asci are very long and narrow; the ascospores are different in shape (ratio L/B larger), more regularly septate and react I+ dark violet brown; and the typical K+ purplish reaction of the exciple of P. neesii is missing (Fig. 4). This material clearly represents the species presently called Pseudographis pinicola (Nyl.) Rehm. Because Peziza rufonigra is the oldest known name for this species, it is combined in Pseudographis below to replace P. pinicola.

Fig. 4.

Fig. 4.

Lectotype of Peziza rufonigra (Sauter, W Krypto 1917-0001238). A. Apothecia growing through the thallus of the lichen Phlyctis argena, simulating a lichenicolous growth. B. Section through apothecium, in water. C, D. Ascospores reacting violet brown in Lugol. E, F. Hymenium with asci, ascospores and paraphyses, in water, using DIC optics. Scale bars: A = 0.5 mm, B = 100 µm, C–F = 10 µm.

Pseudotryblidium neesii (Arnold) Rehm (as “(Flot.) Rehm”), Rabenh. Krypt.-Fl., Edn 2 (Leipzig) 1.3 (Lief.. 33): 370. 1890 [“1896”]. Figs 2, 3.

Fig. 2.

Fig. 2.

Pseudotryblidium neesii. A–E. American population on Abies grandis, with apothecia growing through the corticolous thallus of the lichen Ochrolechia montana (best seen in section B), simulating a lichenicolous growth (A: apothecium of P. neesii beside apothecium of O. montana) (Haldeman 2078). F, G. European population on Abies alba (Zimmermann M272). Scale bar (in A: same for all photos) = 200 µm.

Fig. 3.

Fig. 3.

Pseudotryblidium neesii (Haldeman 2078). A. Section through apothecium, in water. B. Idem, showing excipular structure, in water. C. Idem, showing reaction with K (inner parts not yet reacting). D–G. Paraphyses, asci and ascospores, in K/I, using DIC optics. Scale bars: A–C = 50 µm, D–G = 10 µm.

Basionym: Dactylospora neesii Arnold (as “(Flot.) Arnold”), Flora, Regensburg 57(7): 108, 1874 [Art. 58.1 (Ex. 1)]. Type: Poland (Silesia), forest near Rybnik, amongst the thallus of Phlyctis argena, on Abies, undated, Stein & Körber, Körber, Lich. Sel. Germ. 420 (H 9218 699!, lectotype of Dactylospora neesii designated here, MycoBank MBT389275); CWU!, M non vid., BG non vid., isolectotypes).

Synonyms: Peziza lecanorae Nees, Flora 19(1), Beibl.: 24. 1836, nom. illeg. [Art. 53.1], non Peziza lecanora J.C. Schmidt & Kunze, 1817.

Peziza neesii Flot., in Rabenhorst, Klotzschii Herb. Viv. Mycol., Cent. 15: no. 1419. 1850, nom. illeg. [Art. 53.1], non Peziza neesii Saut., 1841.

Misapplied name: Leciographa neesii Körb. (as “(Flot.) Körb.”), Parerga lichenol. (Breslau) 5: 463. 1865 [Art. 58.1 (Ex. 1)], nom. illeg. [Art. 52.1].

Ascomata dark reddish brown to almost black, erumpent, later sessile, narrowed below to substipitate, ascomatal margin roundish to somewhat undulate, often radially striate when young; ascomata hard, leathery to almost horny in consistency, solitary or more rarely in groups. Epihymenium dark brown, course granular. Hymenium yellowish to brownish. Subhymenium of interwoven hyphae, yellowish. Excipulum and hypothecium brown to dark brown, of textura globulosa to textura prismatica type, KOH + deep red (pigment dissolving). Paraphyses hyaline, filiform, simple to bifurcate, 1.5–2(–2.5) μm diam, septate, tips slightly swollen and glued together. Asci inamyloid (no apical ring structure visible in iodine solutions), cylindric-clavate, with a short stalk, 8-spored. Ascospores (1–)2–4-celled, ellipsoid to oblong to ovoid, hyaline, yellowish to brownish when overmature, biseriate. Asexual morph not observed.

Hosts: Abies alba and A. grandis.

Distribution: Austria (Maurer et al. 1983, Hafellner 2001), France (Boudier 1907, van den Boom & Breuss 2002), Germany (Nimis et al. 2018), Italy (Crivelli et al. 1981), Poland (lectotype), Slovenia (Nimis et al. 2018), Switzerland (Zimmermann 2011), USA: Idaho, Montana, Oregon and Washington (this paper).

Specimens examined (with collection numbers and GenBank accession codes in parentheses): Switzerland (all on A. alba, all in G): Kanton Bern: Rüti bei Büren, Rütiwald, Leibach, 2018, Zimmermann M271 (MK894287, MK894298), M272 (MK894296); Röthenbach, Vordere Naterswald, 2018, Zimmermann M283; Schüpfen, Bütschwil, Underholz, 2018, Zimmermann M285, M286. Kanton Jura: Sauley Nirveux, 2018, Zimmermann M273 (MK894297); La Joux, Envers des Combes, 2018, Zimmermann M274 (MK894295), Feusi & Zimmermann M291. USA (all on Abies grandis): Idaho: Benewah Co., above St Joe City, 2017, Haldeman 2078 (TU86401, hb. Diederich; MK894285, MK894292); Clearwater Co., 12 km E of Elk River, 2017, Haldeman 2102 (TU86400; MK894284); id., hillside above Orogrande Creek, 2016, Haldeman 1479 (TU87199); id., west side of Dworshak Reservoir, 2015, Haldeman 804B (TU87200); id., 2 km NE of Deer Creek Reservoir (SW of Headquarters), 2017, Haldeman 2135 (hb. Diederich); Kootenai Co.: 2 mi N of Fernan Saddle, 2015, Haldeman 690 (TU86402; MK894286, MK894293); id., near Twin Lakes, 2015, Haldeman 647 (TU87201); Latah Co., SE of Deary, Thuja plicata forest, 2015, Haldeman 1060 (hb. Haldeman); Shoshone Co., Idaho Panhandle National Forest NE of Clarkia, 2015, Haldeman 1053 (hb. Diederich); id., Hammond Creek, off North Fork of the St Joe River, 2017, Haldeman 2649 (hb. Diederich, hb. Haldeman). Montana: Mineral Co., Two Mile Creek just W of St. Regis, 2017, Haldeman 2309 (TU87202, hb. Diederich). Oregon: Hood River Co., along Hwy 35, 0–1 km N of Pollalie Creek Bridge/Copper Spur Rd jct., 2001, Tønsberg 29121 (BG L-71948). Washington: Chelan Co., Little Chumstick Creek, 2018, Haldeman 2917 (hb. Haldeman); Ferry Co., Lynx Creek west of Inchelium, 2019, Haldeman 3312 (OSC); Whatcom Co., Baker Lake Trail, 2019, Haldeman 3347 (hb. Haldeman).

Exsiccatae examined: Peziza neesii Flot. Poland [‘Silesia’]: Buchwald, Grünbusch, parasitic on Loxospora elatina [‘parasitans in crusta Zeoria elatinae’], undated, J. von Flotow. Rabenh., Klotzschii Herb. Viv. Mycol. no. 1419 (HAL).

Pseudographis rufonigra (Saut.) Diederich & Baral, comb. nov. MycoBank MB833089. Fig. 4.

Basionym: Peziza rufonigra Saut., Flora, Regensburg 24: 314. 1841. Type: Austria, ad abietes, ober Tauern, 20 Jun. 1837, on Abies, Sauter (W Krypto 1917-0001238, lectotype designated here, MycoBank: MBT389398); id. (W Krypto 1917-0001276, syntype).

Synonyms: Hysterium pinicola Nyl., Obs. Pez. Fenn.: 77. 1868. Type: “in Lapponia orientali prope Imandram lacum, Rasnavolok, N.I. Fellman, ad corticem abietis”, type not located.

Pseudographis pinicola (Nyl.) Rehm, Rabenhorst’s Kryptogamen-Flora, Pilze – Ascomyceten 1(3): 99. 1888.

Karakehian et al. (2019) included this species and the generic type Pseudographis elatina (Ach.) Nyl. in a phylogenetic analysis and concluded that the genus belongs to the Rhytismataceae within the Rhytismatales. High quality macroscopic and microscopic photographs are presented by these authors.

DISCUSSION

The species of Dermateaceae are often associated with gymno- and angiosperms, being endophytes fruiting on bark (Jaklitsch et al. 2016). With a few exceptions, the species of Dermateaceae are host-specific (Abeln et al. 2000, Jaklitsch et al. 2016), and the host-specificity also holds for Pseudotryblidium neesii, being known on white fir (Abies alba) in Europe (Rehm 1890, Zimmermann 2011), and on grand fir (A. grandis) in North America. Pseudotryblidium was not found on A. lasiocarpa, another common Abies species in Idaho (Patterson et al. 1985) that has frequently been inspected by one of us (MH). European records of P. neesii on other tree species rather than Abies are likely to be misidentifications, e.g. for Phacographa zwackhii (Rehm 1890, Nannfeldt 1932, Hafellner 2009), a lichenicolous fungus inhabiting Phlyctis argena and having positive iodine reactions of hymenial structures (Hafellner 2009), in contrast to P. neesii having negative iodine reactions.

In a traditional sense, Dermateaceae included species with a pigmented exciple of textura angularis or textura globulosa type (Nannfeldt 1932, Nauta & Spooner 2000). Abeln et al. (2000) and Verkley (1999) suggested restricting the family to three genera, Dermea, Neofabrea and Pezicula. These three genera differ from each other mainly by ascomatal characters: the typical ascomata of Dermea are dark brown to black and hard or leathery (Groves 1946, Mehrebi et al. 2018), while they are brighter in colour, softer, fleshy or waxy in Neofabraea and Pezicula (Verkley 1999). The ascomata of Pseudotryblidium are horny, dark brown to almost black (Fig. 2), and thus quite similar to those of Dermea. Many species of Dermateaceae have a pigmented excipulum and hypothecium that turn intensively deep red to violet in KOH (Jaklitsch et al. 2016). The structure of the excipulum and hypothecium (textura globulosa to prismatica type) with a brown pigment (Fig. 3) turning deep red in KOH supports an inclusion of Pseudotryblidium in Dermateaceae.

The heterogeneity of the genus Dermea was shown by Groves (1946) who divided it into four morphological groups based on characters of the asexual morph of the fungus (shape of conidia). The paraphyly of the genus was suggested by Abeln et al. (2000) and Verkley et al. (2003), and our study supports this hypothesis. Groves (1946) showed that D. piceina and D. acerina deviate from the core group of Dermea in several aspects, especially by the oblong-ellipsoid, hyaline conidia that are straight to slightly curved and therefore more similar to those of Pezicula. The presence of an asexual morph in P. neesii has neither been described in the literature nor observed by us. Our attempts to obtain pure cultures of P. neesii from freshly collected specimens from Switzerland unfortunately failed. The monotypic Rhizodermea, isolated mainly from ericaceous hosts (Lin et al. 2010, Verkley et al. 2010), is known to produce only chlamydospore-like structures in culture.

We do not propose any new taxonomical combinations for Dermea acerina and D. piceina or for Rhizodermea. There are two reasons to postpone this taxonomic act: 1) low support to internal relationships within Dermateaceae indicating the need for including more taxa and more genes into the analysis, and 2) lack of clear morphological support (esp. asexual morph) separating Pseudotryblidium and related Dermea and Rhizodermea species from the core group of Dermea.

Additional materials examined: Dermea acerina. Ukraine, Kharkiv Oblast, local protected area Forest Park (Sokolniki-Pomerki) (50.06° N, 36.24° E), on bark of a fallen trunk of Acer tataricum, May 2018, Akulov (TU104990; MK894288, MK894299); on dead twigs of A. tataricum, Oct. 2016, Akulov (TU104992). Dermea cerasi. Ukraine, Kharkiv Oblast, local protected area Lesopark (Sokolniki-Pomerki) (50.06° N, 36.24° E), thin dead attached twigs of Prunus cerasus, May 2018, Akulov (TU104987; MK894291, MK894302); Ivano-Frankivsk Oblast, the vicinity of Sheshory village, by Korvyak stow (48.35° N, 24.99° E), thin dead attached branches of P. cerasus, Aug. 2017, Akulov (TU104988; MK894290, MK894301). Dermea piceina (asexual morph). Ukraine, Zakarpattia Oblast, the vicinity of High-altitude experimental station, the base of Pozhizhevska mountain (48.14° N, 24.52° E), on Picea abies bark of a thin dead attached branch, Aug. 2017, Akulov (TU104989; MN061684). Dermea sp. Ukraine, Khmelnytskyi Oblast, between Humentsi and Kolubaivtsi, on fallen deciduous tree branches, Jul. 2106, Akulov (TU104991; MK894289, MK894300).

ACKNOWLEDGEMENTS

Rasmus Puusepp (Tartu) is thanked for performing lab work. We warmly thank the curators of BG, HAL, H and W, and A. Akulov (Kharkiv) for the loan of herbarium specimens, the curator of CWU for preparing and sending us macro- and microphotographs of Dactylospora neesii, and the curator of B for searching for the original material of Peziza lecanorae. Hans-Otto Baral (Tübingen) helped us with the study of the type of Peziza rufonigra; he and Kadri Pärtel (Tartu) are thanked for helpful discussions about helotialean fungi. We are grateful to James Lendemer (New York) and Linda in Arcadia (Arkadias, Greece) for nomenclatural advice. We also thank Sara Goeking of the Rocky Mountain Research Station for a review of this document. Both reviewers are thanked for their constructive criticism that improved the original version of the manuscript. The financial support of AS was provided by IUT 20–30 and by the European Regional Development Fund (Centre of Excellence EcolChange). The financial support for theNorth American field work done by MH was provided by the US Forest Service’s Forest Inventory and Analysis Units from both the Rocky Mountain and the Pacific Northwest Research Stations.

REFERENCES

  1. Abeln ECA, Pagter MA, Verkley GJM. (2000). Phylogeny of Pezicula, Dermea and Neofabraea Inferred from Partial Sequences of the Nuclear Ribosomal RNA Gene Cluster. Mycologia 92: 685–693. [Google Scholar]
  2. Altschul SF, Gish W, Miller W, et al. (1990). Basic local alignment search tool. Journal of Molecular Biology 215: 403–410. [DOI] [PubMed] [Google Scholar]
  3. Arnold F. (1874). Lichenographische Fragmente. XVI. (Fortsetzung mit Tafel II). Flora (Regensburg) 57: 97–110. [Google Scholar]
  4. Bengtsson-Palme J, Veldre V, Ryberg M, et al. (2013). ITSx: improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and 880 other eukaryotes for use in environmental sequencing. Methods in Ecology and Evolution 4: 914–919. [Google Scholar]
  5. Boudier JLÉ. (1907). Histoire et classification des discomycètes d’Europe. Librairie des Sciences Naturelles, Paris, France. [Google Scholar]
  6. Crivelli P, Petrini L, Petrini O, et al. (1981). A List of Daldini’s Fungus taxa deposited at the Museo Cantonale di Storia naturale in Lugano, TI (Switzerland). Sydowia 34: 49–81. [Google Scholar]
  7. Darriba D, Taboada GL, Doallo R, et al. (2012). jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Edgar RC. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792–1797. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Garbelotto MM, Lee HK, Slaughter G, et al. (1997). Heterokaryosis is not required for virulence of Heterobasidion annosum. Mycologia 89: 92–102. [Google Scholar]
  10. Gouy M, Guindon S, Gascuel O. (2010). SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27: 221–224. [DOI] [PubMed] [Google Scholar]
  11. Groves JW. (1946). North American species of Dermea. Mycologia 38: 231–349. [Google Scholar]
  12. Hafellner J. (2001) Bemerkenswerte Flechtenfunde in Österreich. Fritschiana 28: 1–30. [Google Scholar]
  13. Hafellner J. (2009). Phacothecium resurrected and the new genus Phacographa ( Arthoniales) proposed. Bibliotheca Lichenologica 100: 85–121. [Google Scholar]
  14. Hopple JS, Vilgalys R. (1994). Phylogenetic relationships among coprinoid taxa and allies based on data from restriction site mapping of nuclear rDNA. Mycologia 86: 96–107. [Google Scholar]
  15. Jaklitsch W, Baral H-O, Lücking R, Lumbsch HT. (2016). Ascomycota Vol. 1/2. In: Syllabus of Plant Families (Frey W, ed). Gebrüder Borntraeger Verlag, Germany: 1–74. [Google Scholar]
  16. Karakehian JM, Quijada L, Friebes G, Tanney JB, Pfister DH. (2019). Placement of Triblidiaceae in Rhytismatales and comments on unique ascospore morphologies in Leotiomycetes (Fungi, Ascomycota). MycoKeys 54: 99–133. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Keissler K von. (1916) Revision des Sauterschen Pilzherbars. Annalen des K.K. Naturhistorischen Hofmuseums 30: 77–138. [Google Scholar]
  18. Körber GW. (1865) Parerga lichenologica. Ergänzungen zum Systema lichenum Germaniae. E. Trewendt, Breslau. [Google Scholar]
  19. Lin LC, Lee MJ, Chen JL. (2010) Axenic synthesis of ericoid mycorrhiza in Rhododendron formosanum with Phialocephala species. Taiwan Journal of Forest Science 25: 243–250. [Google Scholar]
  20. Lindsay WL. (1869). Enumeration of micro-lichens parasitic on other lichens. Quarterly Journal of Microscopical Science 9: 49–57, 135–147, 342–358. [Google Scholar]
  21. Maurer W, Poelt J, Riedl J. (1983). Die Flora des Schöckl-Gebietes bei Graz (Steiermark, Österreich). Mitteilungen der Abteilung Botanik am Landesmuseum Joanneum in Graz 11/12: 1–104. [Google Scholar]
  22. Mehrebi M, Asgari B, Wijayawardene NN. (2018). Description of Dermea persica ( Dermateaceae, Helotiales), a new asexual Ascomycete from Iran, and an updated key to Dermea species. Phytotaxa 367: 0025–0037. [Google Scholar]
  23. Miller MA, Pfeiffer W, Schwartz T. (2010). Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), 14 November 2010, New Orleans, Louisiana: IEEE, New Orleans, LA, USA: 1–8. [Google Scholar]
  24. Nannfeldt JA. (1932). Studien über die Morphologie und Systematik der nichtlichenisierten inoperculaten Discomyceten. Nova Acta Regiae Societatis Scientiarum Upsaliensis 8: 1–368. [Google Scholar]
  25. Nauta MM, Spooner B. (1999). British Dermateaceae: 1. Introduction. Mycologist 13: 3–6. [Google Scholar]
  26. Nees von Esenbeck CGD. (1836) Reisebericht über eine Exkursion nach einem Theile des südlichen Riesengebirges, unternommen von dem Präsidenten Nees von Esenbeck und dem Major von Flotow. Flora 19: Beibl: 1–60. [Google Scholar]
  27. Nimis PL, Hafellner J, Roux C, et al. (2018). The lichens of the Alps – an annotated checklist. MycoKeys 31: 1–634. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Patterson PA, Neiman KE, Tonn JR. (1985). Field guide to forest plants of northern Idaho. General Technical Report INT-180. Ogden, UT: U.S. Department of Agriculture, Forest Service, Intermountain Research Station. https://www.fs.fed.us/rm/pubs_int/int_gtr180.pdf
  29. Rabenhorst GL. (1850). Klotzschii herbarium vivum mycologicum sistens fungorum per totam Germaniam crescentium collectionem perfectam. Editio prima 15. Dresden, Germany. [Google Scholar]
  30. Rambaut A. (2014). FigTree v. 1.4.2. http://tree.bio.ed.ac.uk/software/figtree/
  31. Rehm H. (1890). Rabenhorst’s Kryptogamen-Flora, Pilze – Ascomyceten. 1(3): 337–400. [Google Scholar]
  32. Ronquist F, Teslenko M, van der Mark P, et al. (2012). MrBayes 3.2: efficient bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539–542. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Sauter AE. (1841) Beiträge zur Kenntnis der Pilz-Vegetation des Ober-Pinzgaues in Herzogthume Salzburg. Flora (Regensburg) 24: 305–320. [Google Scholar]
  34. Stamatakis A, Hoover P, Rougemont J. (2008). A rapid bootstrap algorithm for the RAxML Web servers. Systematic Biology 57: 758–771. [DOI] [PubMed] [Google Scholar]
  35. Talavera G, Castresana J. (2007). Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology 56: 564–577. [DOI] [PubMed] [Google Scholar]
  36. Tedersoo L, Jairus T, Horton BM, et al. (2008). Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers. New Phytologist 180: 479–490. [DOI] [PubMed] [Google Scholar]
  37. van den Boom PPG, Breuss O. (2002). Lichenen van het zomerkamp in de Cantal (Frankrijk), zomer 1998 [Lichenological report of the summer meeting 1998 in Cantal (France)]. Buxbaumiella 60: 3–16. [Google Scholar]
  38. Verkley GJM, Hofland-Zijlstra JD, Berendse F. (2010). Fungal Planet 46. Rhizodermea veluwensis, gen. et sp. nov. Persoonia 24: 130–131. [Google Scholar]
  39. von Zwackh W. (1862). Enumeratio lichenum florae Heidelbergensis. Ein Beitrag zur Flora der Pfalz (Schluss). Flora (Regensburg) 45: 561–572. [Google Scholar]
  40. Wang Z, Johnston PR, Takamatsu S, et al. (2006). Toward a phylogenetic classification of the Leotiomycetes based on rDNA data. Mycologia 98: 1065–1075. [DOI] [PubMed] [Google Scholar]
  41. White TJ, Bruns T, Lee S, et al. (1990). Amplification and direct sequencing of fungal ribosomal RNA for phylogenetics. In: PCR protocols: a guide to methods and applications (Innis MA, Gelfand DH, Sninsky JJ, et al., eds). Academic Press Inc., New York, USA: 315–322. [Google Scholar]
  42. Zimmermann E. (2011). Pseudotryblidium neesii – ein von Lichenologen häufiger gesammelter Ascomycet auf Abies. Meylania 46: 11–14. [Google Scholar]

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