Correction to: The ISME Journal
10.1038/s41396-018-0318-3
Since publication of the original paper, the authors noticed that a typesetting error meant Table 2 was typeset incorrectly. The correctly laid out table is displayed below. The HTML and PDF versions of this paper have also been updated. The publisher wish to apologise for any inconvenience caused.
Table 2.
Comparison of genomic features among Ca. Sedimenticola endophacoides, free-living Sedimenticola spp. (Flood et al. 2015; Louie et al. 2016), and bacterial symbionts, including the lucinid thioautotrophic symbiont clade A (Petersen et al. 2016; Konig et al. 2016), a vesicomyid clam gill symbiont (Ca. Ruthia Magnifica; Roeselers et al. 2010), a solemyid clam gill symbiont (Dmytrenko et al. 2014), bathymodiolin mussel gill symbionts (Bathymodiolus septemdierum and Bathymodiolus thermophilus; Ikuta et al. 2016; Ponnudurai et al. 2017), deep-sea tubeworm trophosomal symbionts (Ridgeia piscesae, Riftia pachyptila and Tevnia jerichonana; Gardebrecht et al. 2012; Perez and Juniper 2016), a marine nematode ectosymbiont (Ca. Thiosymbion oneisti; Petersen et al. 2016), and a deep-sea scaly-foot snail esophageal gland symbiont (Nakagawa et al. 2014).
| Function | Ca. Sedimenticola endophacoides | S. thio-taurini | S. selenati-reducens | Ca. Thio-diazotropha endoloripes | Ca. Thio-diazotropha endolucinida | Ca. Ruthia magnifica | Solemya velum symbiont | Bathymodiolus spp. symbionts | Deep-sea tubeworm symbionts | Ca. Thiosymbion oneisti | Crysomallon squamiferum symbiont |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Sulfur oxidation | Sqr type VI | Sqr types I and VI | Sqr types I, III and VI | Sqr type I | Sqr type I | Sqr types I and VI | Sqr type I | ||||
| Hydrogen oxidation | Groups 1 and 2b (NAD-dependent) Ni-Fe hydrogenase | Groups 1 and 2a Ni-Fe hydrogenase | − |
Groups 1 and 2b (NAD-dependent) Ni-Fe hydrogenase |
Groups 1 and 2a Ni-Fe hydrogenase | − | Groups 1 and 2a Ni-Fe hydrogenase | ||||
| Carbon fixation | RuBisCo II | RuBisCO Iaq and II | RuBisCo Iaq | RuBisCo Iaq and II | RuBisCO II | RuBisCO Iaq | RuBisCO Iaq | RuBisCO II | RuBisCO Iaq | RuBisCO Iaq and II | |
| Nitrogen fixation | − | + | − | + | + | − | − | − | − | + | − |
| Assimilatory nitrate and nitrite reduction | − | − | − | + | − | − | − | + | + | + | + |
| Urea hydrolysis | + | + | − | + | − | − | + | − | − | + | − |
| Oxygen respiration | cbb3 type terminal oxidase | cbb3, aa3 and cytochrome d ubiquinol oxidases | cbb3 and aa3 type terminal oxidases | cbb3, aa3 and cytochrome d ubiquinol oxidases | |||||||
‘+’ denotes a feature annotated in a genome while ‘−’ denotes a feature not yet sequenced in a genome
Sqr sulfide:quinone oxidoreductase, RuBisCO ribulose-1,5-bisphosphate carboxylase/oxygenase