The XRCC4 rs1805377 polymorphism is not associated with the risk of cancer: An updated meta-analysis

Abstract

Objectives

A growing number of studies have reported that genes involved in the repair of DNA double-strand breaks might be cancer-susceptibility genes. The x-ray cross-complementing group 4 gene (XRCC4) encodes a protein that functions in the repair of DNA double-strand breaks, and this meta-analysis aimed to investigate the relationship between the XRCC4 rs1805377 polymorphism and cancer occurrence.

Methods

We retrieved case–control studies that met the inclusion criteria from PubMed, Web of Science, Embase, and China National Knowledge Infrastructure databases. Associations between rs1805377 and cancer risk were evaluated by odds ratios (ORs) using a random effects model and 95% confidence intervals (CIs) as well as sensitivity and subgroup analyses.

Results

After inclusion criteria were met, the meta-analysis involved 24 studies that included 9,633 cancer patients and 10,544 healthy controls. No significant association was found between rs1805377 and the risk of cancer (pooled OR = 1.107; 95% CI = 0.955–1.284) in the dominant genetic model. Similarly, no significant association was observed in the subgroup analysis.

Conclusions

Through this meta-analysis, we found no association between the rs1805377 polymorphism and cancer occurrence. This may provide useful information for relevant future studies into the etiology of cancer.

Objectives

The occurrence of cancer is currently increasing because of an aging population, the prevalence of smoking, the lack of physical activity, and other lifestyle factors.¹ Cancer is a cellular abnormality initiated by uncontrolled growth caused by an accumulation of damage or mutations in genetically-mediated factors and environmental factors, resulting in cells evading the signal-mediated controls of cell growth and death.² Genetic factors have a greater effect on cancer initiation than environmental and lifestyle factors,³ and a number of potential susceptibility genes and variations have been examined and identified to participate in cancer occurrence.

DNA damage repair involves known molecular pathways such as single-strand damage repair, double-strand break repair, and damage reversal.⁴ Present evidence suggests that genes participating in the repair of DNA double-strand breaks might also be involved in modifying the risk of various cancers.⁵ Among these, the x-ray cross-complementing group 4 gene (XRCC4), which is a specific member of the non-homologous end-joining system, encodes a protein that functions with DNA ligase IV and DNA-dependent protein kinase in repairing DNA double-strand breaks.⁶ XRCC4 also plays a role in both non-homologous end joining and the completion of V(D)J recombination.

Full-length XRCC4 is 276 kb long, contains 23 exons, and is located on chromosome 5q14.2. Mutations in XRCC4 lead to a severely short stature, gonadal failure, microcephaly, and increased genomic instability.^7,8 Additionally, its mutations cause primordial dwarfism without immunodeficiency.⁹ After XRCC4 knockdown, triple-negative breast cancer cells showed significantly increased sensitivity to ionizing radiation,¹⁰ while XRCC4 expression was also shown to have a potential role in the radiotherapy effect in patients with esophageal squamous cell carcinoma.¹¹ Another study found that reducing XRCC4 expression might be associated with improving the prognosis of liver cancer patients undergoing postoperative adjuvant transcatheter arterial chemoembolization.¹²

XRCC4 variations may increase the risk of cancer by influencing protein function. For example, rs1805377 (A>G) in intron 7 appears to abolish an acceptor splice site in exon 8.¹³ This polymorphic locus was reported to be involved in the occurrence of different cancers and the tumor diffusing capacity.^14–18 However, the findings of these studies are inconclusive because of small population sizes, genetic heterogeneity of samples, and other forms of possible confounding bias.

Meta-analysis is a useful method for identifying a common effect when considerable variation exists in study findings.¹⁹ Another advantage is the increased sample size resulting from pooling relevant studies, which can, to some degree, decrease the occurrence of a false-positive or false-negative association generated by random error. Previous meta-analyses have investigated the association between XRCC4 polymorphisms and the risk of cancer, but as the relevant reports accumulate, an exhaustive and updated meta-analysis should be conducted.^20–22 Thus, in the present study, we performed a meta-analysis including a larger number of studies than previously used to investigate the association between the XRCC4 rs1805377 polymorphism and the risk of developing different cancers.

Methods

Identification of appropriate studies

A search of English (PubMed, Web of Science, and Embase) and Chinese language (China National Knowledge Infrastructure) databases was carried out to identify appropriate studies for inclusion in the meta-analysis using the following keywords: XRCC4, rs1805377, and cancer. Reference lists of these studies were also reviewed to identify additional relevant studies.

Inclusion criteria were case–control studies involving cancer patients and reports of ATM allele and/or genotype frequencies. In the case of overlapping datasets, the most recent study was included. Exclusion criteria were the omission of healthy controls or duplication of previous data. With respect to studies lacking inclusion data, the authors were contacted by email to obtain missing information.

Data extraction

Data analysis

Data extraction from the publications was performed independently by two investigators, Xin-yuan Zhang and Xiao-han Wei. Extracted data included the first author surname, publication year, geographic region, genotyping method, sample size, and number of genotypes reported for both patients and controls. Data pertaining to patient ethnicity, control source, and cancer type were also extracted with a view to determining the contributions of underlying characteristics to the study findings.

Trial sequential analysis (TSA)

TSA was performed to evaluate whether the present meta-analysis had a sufficient sample size to generate firm pooled results about the effect of interventions. Evaluation criteria and calculation parameters were based on previous studies.^23,24 TSA was conducted using TSA software (version 0.9.5.10; (http://www.ctu.dk/tsa/).

Statistical analysis

The chi-square goodness-of-fit test was used to calculate the Hardy–Weinberg equilibrium of control genotypes (significant at the 0.05 level), and odds ratios (ORs) and 95% confidence intervals (CIs) were employed to evaluate the strength of the association between rs1805377 and cancer. To calculate the pooled estimates of the ORs and 95% CIs among the studies, a random effects model was used to resolve inter-study heterogeneity.²⁵

For the measurement of pooled ORs, three genetic models (allele contrast, dominant, and recessive) were employed. As described in a previous study,²⁶ OR1 (AA vs. aa), OR2 (Aa vs. aa), and OR3 (AA vs. Aa) were compared, where A is the risk allele, from which the most appropriate genetic model was selected.^27,28

A Q statistic was used to evaluate the degree of inter-study heterogeneity, with the absence of heterogeneity being defined as P > 0.05.^29,30 The I² is the proportion of observed variance in effect size attributable to the true differences among studies. Additionally, the I² value was used to measure the degree of heterogeneity, with <25% representing low heterogeneity, 25% to 75% representing moderate heterogeneity, and >75% representing high heterogeneity. Subgroup analysis was carried out for ethnicity (e.g., Asian, Caucasian), source of controls (e.g., hospital or population), and types of cancer (e.g., breast cancer, bladder cancer).

A sensitivity analysis was used to evaluate whether the pooled effect size was potentially influenced by a single study. Each study was omitted from the meta-analysis in turn, then significant alterations to the pooled effect size were evaluated.

Funnel plots were generated for each study to evaluate publication bias. The standard error of log(OR) was plotted against log(OR); when the plot was asymmetrical, bias was determined. Accordingly, for the determination of the degree of asymmetry, an Egger test was performed; P < 0.05 indicated publication bias.³¹

Stata version 10.0 (Stata Corp., College Station, TX, USA) was used to perform all statistical calculations.

In silico analysis

To predict the potential association between rs1805377 and XRCC4 expression, we conducted expression quantitative trait loci (eQTL) analysis using the GTEx portal website (http://www.gtexportal.org/home/).^17,18

Results

Online literature databases were used to identify relevant publications for inclusion in the meta-analysis. Twenty-four publications were included according to the established inclusion criteria.^13,32–54 A flow diagram of this process is shown in Figure 1. Subjects involved in the studies are not overlapping. These 24 case–control studies collectively contained 9,633 cancer patients and 10,544 unaffected controls. Individuals with different genetic backgrounds and different types of cancer were included. The main characteristics of the included studies are listed in Table 1. Genotype and allele frequencies of rs1805377 and the Hardy–Weinberg equilibrium (HWE) in the controls are summarized in Table 2. Of the 24 studies, four publications deviated significantly from HWE.^35,42,44,51

Figure 1.

Flow diagram of literature screening.

Table 1.

Baseline characteristics of qualified studies in this meta-analysis.

Author	Year	Region	Ethnicity	Control source	Type of cancer	Cases/controls
Fu	2003	Taiwan	Asian	Hospital	Breast cancer	254/379
García-Closas	2006	USA	Caucasian	Population	Breast cancer	1898/1514
Figueroa	2007	Spain	Caucasian	Hospital	Bladder cancer	1150/1149
Margulis	2008	USA	Caucasian	Hospital	Renal cell carcinoma	326/335
Tseng	2008	Taiwan	Asian	Hospital	Oral cancer	636/636
Liu	2008	China	Asian	Hospital	Glioma	771/752
Chiu	2008	Taiwan	Asian	Hospital	Oral cancer	318/318
Siraj	2008	Saudi Arabia	Asian	Population	Papillary thyroid cancer	223/229
Tseng	2009	Taiwan	Asian	Hospital	Non-small cell lung cancer	152/162
Leudeke	2009	Germany	Caucasian	Hospital	Prostate cancer	512/539
Long	2010	China	Asian	Hospital	Gastric antrum adenocarcinoma	361/616
Gomes	2010	Portugal	Caucasian	Hospital	Thyroid cancer	109/217
Shen	2010	USA and Australia	Caucasian	Population	Non-Hodgkin lymphoma	1946/1808
Rajaraman	2010	USA	Caucasian	Hospital	Glioma, meningioma and acoustic neuroma	565/495
Mandal	2011	India	Asian	Hospital	Prostate cancer	192/224
Mittal	2012	India	Asian	Hospital	Urothelial bladder cancer	211/244
Zhao	2013	China	Asian	Hospital	Glioma	384/384
Liu	2014	China	Asian	Hospital	Hepatocellular carcinoma	200/207
Ding	2015	China	Asian	Hospital	Pancreatic cancer	206/412
Shen	2015	China	Asian	Hospital	Pancreatic cancer	248/496
Su	2015	China	Asian	Hospital	Glioma	162/324
Jiao	2016	China	Asian	Hospital	Glioma	317/352
Makkoch	2016	Thailand	Asian	Hospital	Hepatocellular carcinoma	121/107
Yang	2016	China	Asian	Hospital	Esophageal squamous cell carcinoma	189/189

Table 2.

Distribution of genotype and allele frequencies of the XRCC4 rs1805377 polymorphism.

	Genotype distribution							Allele frequency
	Cases, n			Controls, n				Cases, %		Controls, %
Author	AA	AG	GG	AA	AG	GG	P HWE	A	G	A	G
Fu	14	102	135	24	159	196	0.2698	0.26	0.74	0.27	0.73
García-Closas	1231	285	20	964	239	10	0.2494	0.89	0.11	0.89	0.11
Figueroa	13	232	841	12	168	852	0.2574	0.12	0.88	0.09	0.91
Margulis	12	82	229	13	58	262	0.0001	0.16	0.84	0.13	0.87
Tseng	173	127	18	167	130	21	0.5210	0.74	0.26	0.73	0.27
Liu	382	312	53	379	305	48	0.1985	0.72	0.28	0.73	0.27
Chiu	173	127	18	167	130	21	0.5210	0.74	0.26	0.73	0.27
Siraj	2	13	33	12	88	127	0.5168	0.18	0.82	0.25	0.75
Tseng	83	48	19	83	59	9	0.7266	0.71	0.29	0.75	0.25
Leudeke	8	107	422	8	89	410	0.2200	0.11	0.89	0.10	0.90
Long	96	173	92	340	205	71	<0.0001	0.51	0.49	0.72	0.28
Gomes	1	15	93	6	45	166	0.1793	0.08	0.92	0.13	0.87
Shen	29	253	795	33	229	831	0.0007	0.14	0.86	0.13	0.87
Rajaraman	10	103	413	7	115	347	0.4665	0.12	0.88	0.14	0.86
Mandal	131	55	6	149	65	10	0.4000	0.83	0.17	0.81	0.19
Mittal	140	70	1	156	79	9	0.7969	0.83	0.17	0.80	0.20
Zhao	179	143	62	195	153	36	0.4537	0.65	0.35	0.71	0.29
Liu	122	60	18	124	66	17	0.0618	0.76	0.24	0.76	0.24
Ding	74	95	37	159	184	69	0.2079	0.59	0.41	0.61	0.39
Shen	92	112	44	201	216	79	0.1043	0.60	0.40	0.62	0.38
Su	62	70	30	137	134	53	0.0413	0.60	0.40	0.63	0.37
Jiao	173	121	22	197	132	23	0.8884	0.74	0.26	0.75	0.25
Makkoch	60	66	12	55	42	10	0.6322	0.67	0.33	0.71	0.29
Yang	95	80	14	88	83	18	0.8052	0.71	0.29	0.69	0.31

Abbreviation: P_HWE represents the P value of the Hardy–Weinberg equilibrium test in the genotype distribution of controls.

Meta-analysis

Pooled ORs (with 95% CIs) in dominant, recessive, homozygous codominant, heterozygous codominant, and allele contrast genetic models were employed to evaluate the association of the rs1805377 polymorphism with cancer risk (Table 3 and Figure 2). The dominant model was selected to perform the pooled analysis according to the selection criteria of genetic models. The pooled results showed that there was no association between rs1805377 and the risk of cancer. The summary OR under a random effects model was 1.107 (95% CI = 0.955–1.284). Subsequent subgroup analysis also failed to detect any association of rs1805377 with cancer risk among East Asian and Caucasian patients (Table 4). Moreover, no association between rs1805377 and cancer was observed by subgroup analysis with respect to the control source (hospital or population). However, subgroup analysis according to cancer type revealed an association between rs1805377 and gastric antrum adenocarcinoma, but not other cancer types (Table 4).

Table 3.

Summarized ORs with 95% CIs for the association of the XRCC4 rs1805377 polymorphism with cancer.

Polymorphism	Genetic model	n	Statistical model	OR	95% CI	p z	I2(%)	p h	p e
Rs1805377
	Allele contrast	24	Random	1.062	0.944–1.194	0.316	56.7	<0.001	0.919
	Homozygous codominant	24	Random	1.198	0.949–1.513	0.129	63.5	<0.001	0.037
	Heterozygous codominant	24	Random	1.097	0.960–1.255	0.174	57.6	<0.001	0.747
	Dominant	24	Random	1.107	0.955–1.284	0.176	68.4	<0.001	0.976
	Recessive	24	Random	1.110	0.939–1.312	0.221	69.1	<0.001	0.360

Note: n, the number of studies; OR, odds ratio; CI, confidence interval; p_z, P value for association test; p_h, P value for heterogeneity test; p_e, P value for publication bias test.

Figure 2.

Forest plot of the association between the XRCC4 rs1805377 polymorphism and cancer in the dominant genetic model (GG + GA vs. AA).

Table 4.

Stratified analysis of the association of the XRCC4 polymorphisms with cancer under the dominant model.

	rs1805377
Subgroup analysis	n	OR	95% CI	p z	I2 (%)	p h
Overall	24	1.107	0.955–1.284	0.176	68.4	<0.001
Ethnicity
East Asians	16	1.125	0.935–1.354	0.212	78.0	<0.001
Caucasians	8	0.986	0.839–1.159	0.865	0.0	0.969
Source of controls
Hospital	21	1.115	0.942–1.320	0.204	71.4	<0.001
Population	3	0.981	0.824–1.169	0.832	0.0	0.796
Type of cancer
Breast cancer	2	0.971	0.811–1.164	0.752	0.0	0.623
Bladder cancer	2	0.913	0.645–1.292	0.606	0.0	0.864
Oral cancer	2	0.927	0.744–1.156	0.500	0.0	1.000
Glioma	5	1.077	0.941–1.233	0.280	0.0	0.863
Thyroid cancer	2	1.728	0.499–5.987	0.388	0.0	0.512
Prostate cancer	2	0.944	0.646–1.380	0.766	0.0	0.803
Pancreatic cancer	2	1.140	0.903–1.438	0.271	0.0	0.900
Hepatocellular carcinoma	2	1.106	0.779–1.570	0.572	18.6	0.268

Note: n, the number of studies; OR, odds ratio; CI, confidence interval; p_z, P value for association test; p_h, P value for heterogeneity test. The subgroup with only one study is not shown.

Sensitivity analysis

Sensitivity analysis was used to evaluate the extent to which each individual study contributed to the pooled results. Each study was eliminated from the analysis in turn, then pooled ORs were determined. No significant changes were detected between any of the analyses or the overall results; thus, we can be confident that the results of the meta-analysis display stability and reliability.

Assessment of publication bias

A funnel plot (Figure 3) was generated to assess publication bias, from which no significant effects were detected (Table 3).

Figure 3.

Funnel plot analysis depicting publication bias in the association between the XRCC4 rs1805377 polymorphism and cancer risk.

TSA

In the overall analysis for dominant genetic model, the required sample size was 106,055 patients to reach the anticipated intervention effect (Figure 4). Results showed that the Z-curve did not cross the trail monitoring boundary, indicating that the present sample size was not sufficient and that further trials are required.

Figure 4.

TSA for overall analysis under the dominant genetic model.

In silico analysis

eQTL analysis found that, compared with the A allele, the G allele of the rs1805377 locus leads to increased expression of XRCC4 mRNA (Figure 5).

Figure 5.

In silico analysis of XRCC4 expression with the rs1805377 polymorphism.

Discussion

The relationship between the XRCC4 rs1805377 polymorphism and cancer occurrence was explored in the present study using a meta-analysis consisting of 23 case–control studies. Our results indicated no association of this polymorphism with cancer risk except for gastric antrum adenocarcinoma.

Previously, a putative association of rs1805377 with cancer occurrence was analyzed in three meta-analyses.^20–22 While our meta-analysis overlaps somewhat with prior analyses, we included new analyses that have been conducted since these studies were published. Twenty-four studies were included to comprehensively investigate the role of rs1805377 in the occurrence of cancer. These consisted of patients with various types of cancer (breast cancer, bladder cancer, renal cell carcinoma, oral cancer, glioma, thyroid cancer, non-small-cell lung cancer, prostate cancer, gastric antrum adenocarcinoma, non-Hodgkin lymphoma, pancreatic cancer, hepatocellular carcinoma, and esophageal squamous cell carcinoma). With a view to evaluating the potential origins of heterogeneity and measuring stability, we performed subgroup analyses by ethnicity, control source, and cancer type. Therefore, to some extent, the final results of our meta-analysis are more accurate and comprehensive than previous meta-analyses.

There was considerable heterogeneity in our meta-analysis, which might reflect differences in genetic backgrounds. In subgroup analysis by ethnicity, we observed no significant heterogeneity in the East Asian subgroup, but strong heterogeneity in the Caucasian subgroup. This latter subgroup consisted of eight studies, including patients from the USA, Spain, Saudi Arabia, Germany, Portugal, and Australia. The observed heterogeneity may reflect the varied lifestyles and wide distribution of Caucasians, which can give rise to different cancer risks.⁵⁵

Our ability to conclusively define stable effects by subgroup, however, is limited by the relatively small sample size included in the subgroup analyses, particularly regarding cancers such as renal cell carcinoma, non-small cell lung cancer, gastric antrum adenocarcinoma, non-Hodgkin lymphoma, hepatocellular carcinoma, and esophageal squamous cell carcinoma. Our meta-analysis found an association between rs1805377 and the risk of gastric antrum adenocarcinoma, but this result should be interpreted with caution as only one study involving gastric antrum adenocarcinoma patients was included. Thus, we cannot conclude whether rs1805377 is associated with risk of cancer in these subgroups because of the limited sample size.

XRCC4 is required for non-homologous end joining, which is one of the major pathways for repairing DNA double-strand breaks. In its abnormal state it can lead to severe combined immunodeficiency,⁹ but one reported patient with mutations in XRCC4 displayed microcephaly and progressive ataxia but a normal immune response, suggesting that a XRCC4 deficiency can cause a marked neurological phenotype but no overt immunodeficiency.⁵⁶ Moreover, the XRCC4 c.482G>A mutation, which affects the last nucleotide of exon 4, induces defective splicing of XRCC4 pre-mRNA leading to premature protein truncation and likely loss of XRCC4 function.⁸ Additionally, genome-wide expression analysis revealed age-related impairment of mitosis, telomere and chromosome maintenance, and the induction of genes associated with DNA repair and non-homologous end-joining, most notably XRCC4 and ligase 4.⁵⁷ Considering the inconsistency of the current results, more efforts are needed to explore the role of XRCC4 mutations in the occurrence of cancer.

Conclusion

The present study demonstrated no association between the XRCC4 rs1805377 polymorphism and cancer risk. Additional studies involving a wider range of ethnicities are now required to validate our subgroup analyses. Furthermore, environmental and epigenetic factors that contribute to cancer risk should also be studied.

Declaration of conflicting interest

The authors declare that there is no conflict of interest.

Funding

This research received no specific grant from any funding agency in the public, commercial, or not-for-profit sectors.

ORCID iDs

Bao-jie Wang https://orcid.org/0000-0003-1931-423X

Jun Yao https://orcid.org/0000-0003-0781-5694