Febuxostat and ethanol molecules are linked into an O—H⋯O and O—H⋯N bonded chain structure.
Keywords: crystal structure, solvate, pharmaceuticals, hydrogen bonding, isostructural
Abstract
The title compound, 2-(3-cyano-4-isobutoxyphenyl)-4-methyl-1,3-thiazole-5-carboxylic acid ethanol monosolvate, C16H16N2O3S·C2H6O, (I), displays intermolecular O—H⋯O and O—H⋯N bonds in which the carboxyl group of the febuxostat molecule and the hydroxyl group of the ethanol molecule serve as hydrogen-bond donor sites. These interactions result in a helical hydrogen-bonded chain structure. The title structure is isostructural with a previously reported methanol analogue.
Chemical context
Febuxostat is a novel, small-molecule, non-purine-selective inhibitor of xanthine oxidase developed for the treatment of chronic gout and hyperuricemia, via oral administration (Pascual et al., 2009 ▸; Gray & Walters-Smith, 2011 ▸; Kataoka et al., 2015 ▸). This drug is currently marketed by Takeda Pharmaceuticals Inc. under the trade name Uloric. Matsumoto et al. (1999 ▸) disclosed the existence of five solid forms of febuxostat, i.e. of the anhydrous forms A, B and C, a methanol solvate D and a hemihydrate G. The crystal structures of two polymorphs were reported by Maddileti et al. (2013 ▸) and Yadav et al. (2017 ▸). Additionally, solvate structures containing the febuxostat molecule and methanol (Jiang et al., 2011 ▸), acetic acid (Wu et al., 2015 ▸) or pyrdine (Zhu et al., 2009 ▸) have been described.
The current study was carried out as part of an investigation with the aim of establishing a modified synthetic route for febuxostat (Lutra et al., 2012 ▸), avoiding harsh conditions, toxic reagents to form the thioamide and the highly toxic cyanides. One of the key aspects of the novel route of synthesis was the introduction of a modified version of the Duff reaction (Duff & Bills, 1932 ▸, 1934 ▸) in the first step, which finally resulted in improved overall yields compared to the original synthesis by Hasegawa (1998 ▸).
Structural commentary
The febuxostat molecule (Fig. 1 ▸) is essentially planar. This is illustrated by the fact that the mean plane defined by all its non-H atoms, except for C22 of the isobutyl group, results in a root-mean-square deviation for the 21 fitted atoms of only 0.0890 Å. Atom C22 is located at a distance of 1.498 (3) Å from this mean plane. All bond lengths and angles are in good agreement with the geometrical characteristics of previously determined febuxostat structures (see below). The relative mutual orientation of the CN substituent at the phenyl ring and the Me group at the thiazole ring is characterized by the torsion angle S1—C2—C6—C7 of −6.5 (3)°. This torsion is also defined as τ in the Scheme. The isobutoxy group adopts the expected extended chain geometry with C9—O18—C19—C20 = 175.3 (2)° and O18—C19—C20—C21 = 170.7 (2)°.
Figure 1.
Asymmetric unit of (I) with displacement ellipsoids drawn at the 50% probability level and hydrogen atoms drawn as spheres of arbitrary size.
Supramolecular features
The carboxyl group of the febuxostat molecule is linked to the OH group of an EtOH molecule via an O23—H23⋯N3(−x + 1, y +
, −z + 1) interaction. The hydroxy group of the solvent additionally serves as a hydrogen-bond donor group for an O14—H14⋯O23(x − 1, y, z) bond to a second febuxostat molecule (see Table 1 ▸). Together, these two interactions result in a hydrogen-bonded chain composed of alternating febuxostat and ethanol molecules that displays a 21 symmetry and propagates parallel to the b axis (Fig. 2 ▸). The same hydrogen-bonded structure is also present in the analogous MeOH solvate of febuxostat, first reported (at 296 K) by Jiang et al. (2011 ▸) and redetermined by us at 173 K as part of this study (Gelbrich et al., 2020a
▸). Indeed, a comparison with the program XPac (Gelbrich & Hursthouse, 2005 ▸) reveals that the EtOH and MeOH solvates are isostructural. The comparison of corresponding geometrical parameters generated from the complete set of 22 non-H atomic positions in the febuxostat molecule resulted in a dissimilarity index (Gelbrich et al., 2012 ▸) of x = 3.3, which indicates a high agreement of the febuxostat packing in the EtOH and MeOH solvates.
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O23—H23⋯N3i | 0.83 (2) | 2.07 (2) | 2.878 (3) | 162 (4) |
| O14—H14⋯O23ii | 0.84 (2) | 1.80 (2) | 2.631 (3) | 170 (4) |
Symmetry codes: (i)
; (ii)
.
Figure 2.
Hydrogen-bonded layer structure of (I), viewed along the a axis.
Database survey
Table 2 ▸ displays those entries in the Cambridge Structural Database (version 5.41, November 2019; Groom et al., 2016 ▸) that relate to crystal structures containing the febuxostat molecule. The febuxostat geometries in most of these structures are in good agreement with the parameters of (I), i.e. the torsion τ (see Scheme) typically adopts a value close to 0°. However, an opposite geometry with τ values close to 180° has been reported for the polymorphs Q and H1, a co-crystal with 4-aminobenzoic acid and a 2-(pyridin-2-ylamino)pyridinium salt.
Table 2. Conformation of febuxostat molecules in polymorphs and multi-component structures, indicated by the torsion angle τ.
| Form | CSD | τ (°) | Ref. |
|---|---|---|---|
| Polymorph Q | HIQQAB | −174.1 | Maddileti et al. (2013 ▸) |
| Polymorph H1 | HIQQAB02 | 177.9 | Yadav et al. (2017 ▸) |
| −1.2 | |||
| MeOH solvate (173 K) | CCDC 1981184 | 5.6 | Gelbrich et al. (2020a ▸) |
| MeOH solvate (296 K) | UREQOY | 5.0 | Jiang et al. (2011 ▸) |
| EtOH solvate (I) | – | 4.5 | This study |
| Acetic acid solvate (173 K) | CCDC 1981185 | −2.8 | Gelbrich et al. (2020b ▸) |
| Acetic acid solvate (296 K) | XULRUT | −3.2 | Wu et al. (2015 ▸) |
| Pyridine solvate | PUHGUV | 2.7 | Zhu et al. (2009 ▸) |
| Acetamide co-crystal | HIQQEF | −6.9 | Maddileti et al. (2013 ▸) |
| Nicotinamide co-crystal | HIQQIJ | 0.7 | Maddileti et al. (2013 ▸) |
| 4-Aminobenzoic acid co-crystal | HIQQOP | −176.9 | Maddileti et al. (2013 ▸) |
| Urea co-crystal | HIQQUV | 4.4 | Maddileti et al. (2013 ▸) |
| Isonicotinamide co-crystal | OYADAV | −3.8 | Kang et al. (2017 ▸) |
| 2-Methyl-1H-imidazole salt | FAMQIW | −19.4 | Zhang & Zhang (2017 ▸) |
| 13.4 | |||
| Imidazole salt monohydrate | KIPMAA | −5.7 | Gao et al. (2019 ▸) |
| 2-(Pyridin-2-ylamino)pyridinium salt | FAMQOC | −174.5 | Zhang & Zhang (2017 ▸) |
Synthesis and crystallization
Synthesis
The preparation of febuxostat was carried out according to the scheme in Fig. 3 ▸ in a modified procedure based on the original synthesis by Hasegawa (1998 ▸).
Figure 3.
Synthetic scheme for the preparation of febuxostat (1).
Ethyl 2-(3-formyl-4-hydroxyphenyl)-4-methyl-5-thiazolecarboxylate (3)
Ethyl 2-(4-hydroxyphenyl)-4-methyl-5-thiazole carboxylate (2, 10.0 g) and hexamethylenetetramine (5.86 g) were added to trifluoroacetic acid (100 ml). The reaction mixture was heated to reflux under stirring for 40 h, and trifluoroacetic acid was distilled out. The obtained residue was cooled to 298 K, water (200 ml) was added slowly, and the slurry was stirred for 4 h. After filtration, the product was washed and dried under vacuum to give 9.60 g of 3.
Ethyl 2-(3-formyl-4-isobutoxyphenyl)-4-methyl-5-thiazolecarboxylate (4)
Ethyl 2-(3-formyl-4-hydroxyphenyl)-4-methyl-5-thiazolecarboxylate (3, 350 g), potassium carbonate (332 g) and isobutyl bromide (330 g) were added to DMF (1.75 1). The reaction mixture was heated to 383±3 K and stirred for 4 h. The reaction mixture was cooled to 298 K, and water (0.50 l) was added slowly. The slurry was stirred for 2 h. After filtration, the product was washed and dried under vacuum to give 389 g of 4. 1H NMR (CDCl3), 400 MHz): δ = 1.079–1.101 (d, 6H), 1.366–1.413 (t, 3H), 2.185–2.230 (m, 1H), 2.769 (s, 3H), 3.914–3.935 (d, 2H), 4.316–4.387 (q, 2H), 7.045–7.074 (d, 1H), 8.188–8.225 (dd, 1H), 8.353–8.361 (d, 1H).
Ethyl 2-(3-cyano-4-isobutoxyphenyl)-4-methyl-5-thiazolecarboxylate (5)
Ethyl 2-(3-formyl-4-isobutoxyphenyl)-4-methyl-5-thiazolecarboxylate (4, 350 g), sodium formate (123 g) and hydroxylamine hydrochloride (84 g) were successively added to formic acid (1.4 l). The reaction mixture was heated to reflux and stirred for 5 h to complete the reaction. The reaction solution was cooled to 298 K, and water (2.8 l) was slowly added. After stirring for approximately 1 h, the slurry was filtered, the product was washed with water and dried under vacuum to give 321 g of 5. 1H NMR (CDCl3), 400 MHz): δ = 1.053–1.104 (d, 6H), 1.368–1.463 (t, 3H), 2.164–2.225 (m, 1H), 2.768 (s, 3H), 3.890–3.911 (d, 2H), 4.324–4.395 (q, 2H), 6.998–7.027 (d, 1H), 8 8.188–8.225 (dd, 1H), 8.353–8.361 (d, 1H).
2-(3-Cyano-4-isobutoxyphenyl)-4-methyl-5-thiazole carboxylic acid (1)
Ethyl 2-(3-cyano-4-isobutoxyphenyl)-4-methyl-5-thiazolecarboxylate (5, 250 g) and potassium carbonate (200 g) were successively added to a mixture of MeOH (7.5 l) and water (250 ml). To complete the reaction, the solution was heated to reflux for 3 h under stirring. The clear solution was cooled, and vacuum was applied to distil out the solvent below 313 K. Water (5 l) was added to the residue. After stirring, EtOAc (2.5 l) was added. The solution was stirred, and the layers were separated. The pH of the aqueous solution was adjusted to 2.5±0.2 by adding diluted hydrochloric acid solution at 313 K. After stirring for 1 h, the slurry was filtered, and the product was washed with water and dried under vacuum to give 215 g of 1.
Crystallization
Febuxostat (1 g) was dissolved in ethanol (10 ml), which yielded a clear solution upon heating to 338 K. After filtration, the solution was allowed to cool to room temperature, and the subsequent crystallization resulted in febuxostat ethanol solvate.
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. All H atoms were identified in difference maps. Methyl H atoms were idealized and included as rigid groups allowed to rotate but not tip (C—H = 0.98 Å), and their U
iso parameters were set to 1.5U
eq(C) of the parent carbon atom. H atoms bonded to secondary CH2 (C—H = 0.99 Å) or tertiary CH (C—H = 0.99 Å) carbon atoms and H atoms bonded to C atoms in aromatic rings (C—H = 0.95 Å) were positioned geometrically and refined with U
iso set to 1.2U
eq(C) of the parent carbon atom. H atoms in OH groups were identified in difference maps, refined with a distance restraint [O—H = 0.84 (2) Å] and a free U
iso parameter. Two outliers (
4) and (
,
,2) were omitted in the final cycles of refinement.
Table 3. Experimental details.
| Crystal data | |
| Chemical formula | C16H16N2O3S·C2H6O |
| M r | 362.43 |
| Crystal system, space group | Monoclinic, P21 |
| Temperature (K) | 173 |
| a, b, c (Å) | 4.7274 (2), 17.7820 (5), 10.7340 (4) |
| β (°) | 98.994 (4) |
| V (Å3) | 891.23 (6) |
| Z | 2 |
| Radiation type | Mo Kα |
| μ (mm−1) | 0.21 |
| Crystal size (mm) | 0.40 × 0.40 × 0.36 |
| Data collection | |
| Diffractometer | Rigaku Oxford Diffraction Xcalibur, Ruby, Gemini ultra |
| Absorption correction | Multi-scan (CrysAlis PRO; Rigaku OD, 2015 ▸) |
| T min, T max | 0.760, 1.000 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 6054, 3070, 2917 |
| R int | 0.028 |
| (sin θ/λ)max (Å−1) | 0.641 |
| Refinement | |
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.030, 0.077, 1.04 |
| No. of reflections | 3070 |
| No. of parameters | 238 |
| No. of restraints | 3 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.26, −0.17 |
| Absolute structure | Flack x determined using 1046 quotients [(I +)-(I -)]/[(I +)+(I -)] (Parsons et al., 2013 ▸). |
| Absolute structure parameter | −0.02 (4) |
Supplementary Material
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989020006076/fy2145sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989020006076/fy2145Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989020006076/fy2145Isup3.cml
CCDC reference: 2000973
Additional supporting information: crystallographic information; 3D view; checkCIF report
supplementary crystallographic information
Crystal data
| C16H16N2O3S·C2H6O | F(000) = 384 |
| Mr = 362.43 | Dx = 1.351 Mg m−3 |
| Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
| a = 4.7274 (2) Å | Cell parameters from 2681 reflections |
| b = 17.7820 (5) Å | θ = 2.3–28.6° |
| c = 10.7340 (4) Å | µ = 0.21 mm−1 |
| β = 98.994 (4)° | T = 173 K |
| V = 891.23 (6) Å3 | Prism, colourless |
| Z = 2 | 0.40 × 0.40 × 0.36 mm |
Data collection
| Rigaku Oxford Diffraction Xcalibur, Ruby, Gemini ultra diffractometer | 3070 independent reflections |
| Radiation source: fine-focus sealed X-ray tube, Enhance (Mo) X-ray Source | 2917 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.028 |
| Detector resolution: 10.3575 pixels mm-1 | θmax = 27.1°, θmin = 1.9° |
| ω scans | h = −5→6 |
| Absorption correction: multi-scan CrysAlisPro (Rigaku OD, 2015) | k = −17→22 |
| Tmin = 0.760, Tmax = 1.000 | l = −12→13 |
| 6054 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.030 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.077 | w = 1/[σ2(Fo2) + (0.0439P)2 + 0.0696P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.04 | (Δ/σ)max < 0.001 |
| 3070 reflections | Δρmax = 0.26 e Å−3 |
| 238 parameters | Δρmin = −0.17 e Å−3 |
| 3 restraints | Absolute structure: Flack x determined using 1046 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013). |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.02 (4) |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.32087 (12) | 0.17683 (3) | 0.31163 (5) | 0.02221 (15) | |
| C2 | 0.3894 (5) | 0.08540 (14) | 0.3610 (2) | 0.0195 (5) | |
| N3 | 0.2673 (4) | 0.06576 (12) | 0.45794 (18) | 0.0199 (4) | |
| C4 | 0.1127 (5) | 0.12385 (14) | 0.4979 (2) | 0.0210 (5) | |
| C5 | 0.1165 (5) | 0.18918 (14) | 0.4308 (2) | 0.0209 (5) | |
| C6 | 0.5737 (5) | 0.03525 (14) | 0.3007 (2) | 0.0188 (5) | |
| C7 | 0.6801 (5) | 0.05673 (15) | 0.1922 (2) | 0.0211 (5) | |
| H7 | 0.6309 | 0.1045 | 0.1555 | 0.025* | |
| C8 | 0.8571 (5) | 0.00904 (14) | 0.1371 (2) | 0.0208 (5) | |
| C9 | 0.9280 (5) | −0.06253 (15) | 0.1882 (2) | 0.0207 (5) | |
| C10 | 0.8252 (5) | −0.08344 (15) | 0.2980 (2) | 0.0231 (5) | |
| H10 | 0.8757 | −0.1309 | 0.3357 | 0.028* | |
| C11 | 0.6499 (5) | −0.03524 (14) | 0.3523 (2) | 0.0225 (5) | |
| H11 | 0.5797 | −0.0505 | 0.4266 | 0.027* | |
| C12 | −0.0406 (5) | 0.11107 (16) | 0.6073 (2) | 0.0269 (6) | |
| H12A | 0.0985 | 0.1093 | 0.6852 | 0.040* | |
| H12B | −0.1448 | 0.0633 | 0.5962 | 0.040* | |
| H12C | −0.1761 | 0.1522 | 0.6125 | 0.040* | |
| C13 | −0.0224 (5) | 0.26111 (15) | 0.4499 (2) | 0.0234 (5) | |
| O14 | 0.0142 (5) | 0.31184 (12) | 0.36340 (19) | 0.0339 (5) | |
| H14 | −0.062 (8) | 0.3537 (16) | 0.375 (4) | 0.072 (13)* | |
| O15 | −0.1558 (4) | 0.27251 (11) | 0.53494 (18) | 0.0345 (5) | |
| C16 | 0.9755 (6) | 0.03373 (15) | 0.0278 (2) | 0.0259 (6) | |
| N17 | 1.0707 (5) | 0.05481 (15) | −0.0569 (2) | 0.0387 (6) | |
| O18 | 1.0943 (4) | −0.10584 (10) | 0.12590 (16) | 0.0248 (4) | |
| C19 | 1.1767 (5) | −0.17866 (15) | 0.1797 (2) | 0.0227 (5) | |
| H19A | 1.0042 | −0.2076 | 0.1919 | 0.027* | |
| H19B | 1.2988 | −0.1724 | 0.2627 | 0.027* | |
| C20 | 1.3396 (5) | −0.22023 (14) | 0.0906 (2) | 0.0236 (5) | |
| H20 | 1.4987 | −0.1875 | 0.0709 | 0.028* | |
| C21 | 1.4684 (6) | −0.29130 (17) | 0.1579 (3) | 0.0327 (6) | |
| H21A | 1.5817 | −0.2775 | 0.2390 | 0.049* | |
| H21B | 1.5919 | −0.3164 | 0.1054 | 0.049* | |
| H21C | 1.3139 | −0.3254 | 0.1722 | 0.049* | |
| C22 | 1.1480 (7) | −0.24066 (17) | −0.0320 (3) | 0.0336 (6) | |
| H22A | 1.0040 | −0.2773 | −0.0148 | 0.050* | |
| H22B | 1.2643 | −0.2625 | −0.0907 | 0.050* | |
| H22C | 1.0519 | −0.1953 | −0.0694 | 0.050* | |
| O23 | 0.7299 (4) | 0.43799 (11) | 0.37730 (18) | 0.0347 (5) | |
| H23 | 0.741 (8) | 0.4681 (18) | 0.437 (3) | 0.053 (11)* | |
| C24 | 0.4973 (6) | 0.45692 (16) | 0.2805 (3) | 0.0347 (7) | |
| H24A | 0.5205 | 0.5091 | 0.2515 | 0.042* | |
| H24B | 0.3143 | 0.4538 | 0.3142 | 0.042* | |
| C25 | 0.4914 (7) | 0.40395 (19) | 0.1727 (3) | 0.0440 (8) | |
| H25A | 0.4835 | 0.3521 | 0.2031 | 0.066* | |
| H25B | 0.6647 | 0.4107 | 0.1343 | 0.066* | |
| H25C | 0.3222 | 0.4141 | 0.1097 | 0.066* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0281 (3) | 0.0153 (3) | 0.0243 (3) | 0.0024 (3) | 0.0077 (2) | 0.0010 (3) |
| C2 | 0.0205 (11) | 0.0154 (12) | 0.0214 (11) | −0.0005 (9) | −0.0003 (10) | −0.0001 (10) |
| N3 | 0.0210 (10) | 0.0168 (11) | 0.0219 (10) | −0.0017 (8) | 0.0028 (8) | −0.0008 (8) |
| C4 | 0.0212 (12) | 0.0173 (12) | 0.0234 (12) | −0.0013 (10) | −0.0002 (10) | −0.0031 (10) |
| C5 | 0.0207 (11) | 0.0209 (14) | 0.0211 (11) | −0.0028 (10) | 0.0034 (9) | −0.0034 (10) |
| C6 | 0.0199 (11) | 0.0149 (12) | 0.0211 (11) | 0.0003 (10) | 0.0014 (9) | −0.0033 (9) |
| C7 | 0.0237 (12) | 0.0146 (12) | 0.0244 (12) | −0.0014 (10) | 0.0018 (10) | 0.0006 (10) |
| C8 | 0.0231 (12) | 0.0164 (12) | 0.0225 (12) | −0.0018 (10) | 0.0025 (10) | −0.0008 (10) |
| C9 | 0.0233 (12) | 0.0167 (12) | 0.0223 (12) | −0.0004 (10) | 0.0040 (10) | −0.0033 (10) |
| C10 | 0.0303 (14) | 0.0151 (13) | 0.0240 (12) | 0.0027 (10) | 0.0046 (10) | 0.0029 (10) |
| C11 | 0.0259 (13) | 0.0200 (13) | 0.0219 (12) | 0.0001 (11) | 0.0045 (10) | −0.0006 (10) |
| C12 | 0.0309 (14) | 0.0218 (14) | 0.0296 (13) | 0.0002 (11) | 0.0095 (11) | −0.0001 (11) |
| C13 | 0.0255 (12) | 0.0192 (13) | 0.0245 (13) | −0.0024 (11) | 0.0006 (11) | −0.0046 (10) |
| O14 | 0.0474 (12) | 0.0196 (10) | 0.0387 (11) | 0.0099 (9) | 0.0189 (9) | 0.0045 (9) |
| O15 | 0.0518 (12) | 0.0232 (10) | 0.0327 (10) | 0.0046 (9) | 0.0191 (9) | −0.0043 (8) |
| C16 | 0.0314 (13) | 0.0166 (13) | 0.0305 (14) | 0.0045 (11) | 0.0072 (12) | −0.0009 (11) |
| N17 | 0.0512 (15) | 0.0318 (15) | 0.0377 (13) | 0.0033 (12) | 0.0210 (12) | 0.0081 (12) |
| O18 | 0.0328 (9) | 0.0175 (9) | 0.0260 (9) | 0.0062 (8) | 0.0105 (8) | 0.0031 (7) |
| C19 | 0.0267 (13) | 0.0162 (13) | 0.0259 (12) | 0.0018 (10) | 0.0068 (10) | 0.0024 (10) |
| C20 | 0.0264 (12) | 0.0172 (13) | 0.0292 (13) | 0.0025 (10) | 0.0108 (11) | 0.0018 (10) |
| C21 | 0.0333 (14) | 0.0225 (14) | 0.0452 (16) | 0.0077 (12) | 0.0146 (13) | 0.0072 (13) |
| C22 | 0.0447 (16) | 0.0284 (16) | 0.0290 (14) | −0.0006 (13) | 0.0099 (12) | −0.0043 (12) |
| O23 | 0.0465 (12) | 0.0218 (10) | 0.0345 (11) | 0.0092 (9) | 0.0025 (9) | −0.0071 (9) |
| C24 | 0.0395 (16) | 0.0237 (15) | 0.0416 (16) | 0.0086 (13) | 0.0078 (13) | −0.0036 (12) |
| C25 | 0.0536 (19) | 0.0343 (18) | 0.0424 (17) | 0.0044 (15) | 0.0020 (15) | −0.0067 (14) |
Geometric parameters (Å, º)
| S1—C2 | 1.725 (3) | O14—H14 | 0.84 (2) |
| S1—C5 | 1.733 (2) | C16—N17 | 1.139 (3) |
| C2—N3 | 1.313 (3) | O18—C19 | 1.446 (3) |
| C2—C6 | 1.466 (3) | C19—C20 | 1.511 (3) |
| N3—C4 | 1.372 (3) | C19—H19A | 0.9900 |
| C4—C5 | 1.369 (4) | C19—H19B | 0.9900 |
| C4—C12 | 1.491 (3) | C20—C22 | 1.520 (4) |
| C5—C13 | 1.467 (4) | C20—C21 | 1.534 (4) |
| C6—C7 | 1.393 (3) | C20—H20 | 1.0000 |
| C6—C11 | 1.395 (3) | C21—H21A | 0.9800 |
| C7—C8 | 1.387 (3) | C21—H21B | 0.9800 |
| C7—H7 | 0.9500 | C21—H21C | 0.9800 |
| C8—C9 | 1.406 (4) | C22—H22A | 0.9800 |
| C8—C16 | 1.444 (4) | C22—H22B | 0.9800 |
| C9—O18 | 1.350 (3) | C22—H22C | 0.9800 |
| C9—C10 | 1.394 (3) | O23—C24 | 1.430 (4) |
| C10—C11 | 1.383 (4) | O23—H23 | 0.83 (2) |
| C10—H10 | 0.9500 | C24—C25 | 1.489 (4) |
| C11—H11 | 0.9500 | C24—H24A | 0.9900 |
| C12—H12A | 0.9800 | C24—H24B | 0.9900 |
| C12—H12B | 0.9800 | C25—H25A | 0.9800 |
| C12—H12C | 0.9800 | C25—H25B | 0.9800 |
| C13—O15 | 1.205 (3) | C25—H25C | 0.9800 |
| C13—O14 | 1.325 (3) | ||
| C2—S1—C5 | 89.55 (12) | N17—C16—C8 | 178.3 (3) |
| N3—C2—C6 | 123.6 (2) | C9—O18—C19 | 117.03 (18) |
| N3—C2—S1 | 114.17 (18) | O18—C19—C20 | 108.51 (19) |
| C6—C2—S1 | 122.25 (18) | O18—C19—H19A | 110.0 |
| C2—N3—C4 | 111.7 (2) | C20—C19—H19A | 110.0 |
| C5—C4—N3 | 115.0 (2) | O18—C19—H19B | 110.0 |
| C5—C4—C12 | 126.3 (2) | C20—C19—H19B | 110.0 |
| N3—C4—C12 | 118.7 (2) | H19A—C19—H19B | 108.4 |
| C4—C5—C13 | 128.6 (2) | C19—C20—C22 | 111.8 (2) |
| C4—C5—S1 | 109.62 (19) | C19—C20—C21 | 108.0 (2) |
| C13—C5—S1 | 121.80 (19) | C22—C20—C21 | 110.5 (2) |
| C7—C6—C11 | 118.3 (2) | C19—C20—H20 | 108.9 |
| C7—C6—C2 | 121.3 (2) | C22—C20—H20 | 108.9 |
| C11—C6—C2 | 120.4 (2) | C21—C20—H20 | 108.9 |
| C8—C7—C6 | 120.7 (2) | C20—C21—H21A | 109.5 |
| C8—C7—H7 | 119.7 | C20—C21—H21B | 109.5 |
| C6—C7—H7 | 119.7 | H21A—C21—H21B | 109.5 |
| C7—C8—C9 | 120.6 (2) | C20—C21—H21C | 109.5 |
| C7—C8—C16 | 119.8 (2) | H21A—C21—H21C | 109.5 |
| C9—C8—C16 | 119.6 (2) | H21B—C21—H21C | 109.5 |
| O18—C9—C10 | 125.0 (2) | C20—C22—H22A | 109.5 |
| O18—C9—C8 | 116.4 (2) | C20—C22—H22B | 109.5 |
| C10—C9—C8 | 118.6 (2) | H22A—C22—H22B | 109.5 |
| C11—C10—C9 | 120.1 (2) | C20—C22—H22C | 109.5 |
| C11—C10—H10 | 119.9 | H22A—C22—H22C | 109.5 |
| C9—C10—H10 | 119.9 | H22B—C22—H22C | 109.5 |
| C10—C11—C6 | 121.6 (2) | C24—O23—H23 | 111 (3) |
| C10—C11—H11 | 119.2 | O23—C24—C25 | 109.5 (2) |
| C6—C11—H11 | 119.2 | O23—C24—H24A | 109.8 |
| C4—C12—H12A | 109.5 | C25—C24—H24A | 109.8 |
| C4—C12—H12B | 109.5 | O23—C24—H24B | 109.8 |
| H12A—C12—H12B | 109.5 | C25—C24—H24B | 109.8 |
| C4—C12—H12C | 109.5 | H24A—C24—H24B | 108.2 |
| H12A—C12—H12C | 109.5 | C24—C25—H25A | 109.5 |
| H12B—C12—H12C | 109.5 | C24—C25—H25B | 109.5 |
| O15—C13—O14 | 123.9 (2) | H25A—C25—H25B | 109.5 |
| O15—C13—C5 | 123.5 (2) | C24—C25—H25C | 109.5 |
| O14—C13—C5 | 112.7 (2) | H25A—C25—H25C | 109.5 |
| C13—O14—H14 | 113 (3) | H25B—C25—H25C | 109.5 |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O23—H23···N3i | 0.83 (2) | 2.07 (2) | 2.878 (3) | 162 (4) |
| O14—H14···O23ii | 0.84 (2) | 1.80 (2) | 2.631 (3) | 170 (4) |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) x−1, y, z.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989020006076/fy2145sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989020006076/fy2145Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989020006076/fy2145Isup3.cml
CCDC reference: 2000973
Additional supporting information: crystallographic information; 3D view; checkCIF report



