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. 2020 May 4;12(5):507. doi: 10.3390/v12050507

Figure 2.

Figure 2

Sequence analysis of the MCPyV NCCR recovered from urine. The alignment is shown between the nucleotide sequence from 5077 to 5280 of the published sequence of MCPyV in GenBank (NCBI) (EU375803) [2] and that obtained from the sequencing of urine positive for MCPyV NCCR (MCPyV 11,19,27,30,36,38,40,47,64,65). Inline graphicAP-1: 5104–5114 nucleotide position (5′-GATGATGCCCC-3′); 5164–5172 nucleotide position (5′-CTTTGTAAG-3′); 5257–5265 nucleotide position (5′-GTTTATCAG-3′); 5261–5269 nucleotide position (5′-ATCAGTCAA-3′); Inline graphicNF1: 5088–5105 nucleotide position (5′-TATTGGCCAGCAGTGTG-3′); Inline graphicTST1: 5200–5214 nucleotide position (5′-GTTGAAAAAAAGTTA-3′); Inline graphicOCT1: 5116–5129 nucleotide position (5′-CATCCTGAAAAATA-3′); 5143–5146 nucleotide position (5′-ACTCTTTTAATG-3′); Inline graphicNFκB: 5188–5197 nucleotide position (5′-CGGGCCTCCC-3′); Inline graphicTATA-like sequences: 5146–5160 nucleotide position (5′-CTTTTAATGTCCTCC-3′); 5202–5212 nucleotide position (5′-TGAAAAAAAG-3′); 5256–5265 nucleotide position (5′-TGTTTATCAG-3′); E: experienced HIV-1-positive patients; N: naive HIV-1-positive patients.