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. 2020 May 19;9:e54055. doi: 10.7554/eLife.54055

Figure 1. Opportunistic stacking approach.

Figure 1.

The proposed method allows to learn from any case for which at least one modality is available. The stacking model first generates, separately for each modality, linear predictions of age for held-out data. 10-fold cross-validation with 10 repeats is used. This step, based on ridge regression, helps reduce the dimensionality of the data by generating predictions based on linear combinations of the major directions of variance within each modality. The predicted age is then used as derived set of features in the following steps. First, missing values are handled by a coding-scheme that duplicates the second-level data and substitutes missing values with arbitrary small and large numbers. A random forest model is then trained to predict the actual age with the missing-value coded age-predictions from each ridge model as input features. This potentially helps improve prediction performance by combining additive information and introducing non-linear regression on a lower-dimensional representation.