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Cell Death and Differentiation logoLink to Cell Death and Differentiation
. 2020 Jan 28;27(7):2206–2216. doi: 10.1038/s41418-020-0496-1

NF-κB-p62-NRF2 survival signaling is associated with high ROR1 expression in chronic lymphocytic leukemia

Elsa Sanchez-Lopez 1,#, Emanuela M Ghia 2,#, Laura Antonucci 1, Natasha Sharma 1, Laura Z Rassenti 2, Jinyi Xu 3, Beicheng Sun 4, Thomas J Kipps 2, Michael Karin 1,✉
PMCID: PMC7308363  PMID: 31992855

Abstract

Progression of chronic lymphocytic leukemia (CLL) and resistance to therapy are affected by tumor microenvironmental factors. One such factor is B-cell activating factor (BAFF), a cytokine that is produced mainly by nurse-like cells (NLC) and enhances CLL cells survival and modulates response to therapy. In CLL cells, BAFF activates NF-κB signaling, but how NF-κB supports CLL survival is not entirely clear. In this study we show that BAFF induces accumulation of the signaling and autophagy adaptor p62/SQSTM1 in a manner dependent on NF-κB activation. p62 potentiates mTORC1 signaling and activates NRF2, the master regulator of the anti-oxidant response. We found that expression of NRF2 target genes, such as NAD(P)H quinone oxidoreductase 1 (NQO1), is particularly enriched in CLL cells with high ROR1 surface expression (ROR1Hi). ROR1Hi CLL cells with elevated NQO1 expression exhibit resistance to drugs that induce ROS accumulation, such venetoclax. However, such cells are more sensitive to compound 29h, a pro-drug that only becomes active after being metabolized by NQO1. Accordingly, 29h sensitizes high NQO1 CLL cells to venetoclax. Collectively, our study unravels a previously unknown signaling network through which the NF-κB-p62-NRF2 axis protects ROR1-high CLL cells from ROS-inducing therapeutics.

Subject terms: Cancer, Cancer microenvironment

Introduction

Chronic lymphocytic leukemia (CLL) is a B-cell malignancy characterized by accumulation of CD19+CD5+ B cells due to dysregulated cell proliferation and diminished cell death [1]. Components of the tumor microenvironment, including fibroblasts, nurse-like cells (NLC), and T lymphocytes, play key roles in CLL progression, supporting leukemic cell survival and proliferation via cell-cell interactions and secreted factors [1]. Despite advances in CLL treatment, CLL cells are kept in proliferating centers, in which leukemic cells are protected from therapeutic agents. To overcome this inherent drug resistance, it is important to understand how microenvironmental and survival signals regulate this process.

A key microenvironmental factor produced by NLC that control CLL cell survival is B-cell activating factor (BAFF) [2–4]. BAFF, a cell survival and maturation factor for B cells, can engage through three different receptors, BCMA and TACI, which also bind the related cytokine APRIL; and BAFF-R or BR3. All three receptors are expressed by CLL cells [4]. Blocking BAFF signaling with antibodies that selectively bind the receptors listed above reduces CLL viability and increases drug sensitivity [5, 6]. BAFF downstream signaling involves both canonical and alternative NF-κB signaling pathways [7, 8] and augments CLL survival [9]. Unfortunately, potent and specific inhibitors of IKKβ, the kinase responsible for canonical NF-κB signaling, were found to augment inflammation due to enhanced and prolonged NLRP3 inflammasome activation [10]. This had precluded that clinical development of such compounds in CLL and other NF-κB-dependent lymphoid malignancies. Accordingly, we postulated that a better understanding of the mechanisms and downstream effectors through which NF-κB supports malignant cell survival and treatment resistance may reveal novel targets more amenable for therapeutic intervention.

One important downstream target for NF-κB that plays a role in several malignancies is p62/SQSTM1, encoded by the SQSTM1 gene [11]. p62 is an autophagy and signaling adaptor that can potentiate mTORC1 signaling [12]. Importantly, by sequestering the negative regulator KEAP1, p62 leads to NRF2 activation, thereby supporting resistance to ROS-inducing drugs [13]. Importantly, NF-κB-mediated p62 induction contributes to termination of NLRP3 inflammasome activation by targeting damaged mitochondria to mitophagic elimination [14]. Consequently, p62 ablation results in the same phenotypic enhancement of NLRP3 inflammasome activation in myeloid cells as achieved by IKKβ inhibitors [10, 15]. However, p62 mediated regulation of NLRP3 inflammasome activation and mitophagy has only been detected in myeloid cells, such as macrophages, whereas in other cell types, such as hepatocytes, p62 was found to control metabolism and malignancy through its effects on mTORC1 and NRF2 [16, 17]. Here we examined whether BAFF-dependent activation of NF-κB induces p62 accumulation and NRF2 activation in CLL and investigated its role in leukemic cell survival and therapy resistance.

Materials and methods

CLL samples, cell culture, and reagents

Blood samples were collected from CLL patients at Moores Cancer Center under informed consent (UCSD HRPP#171884). Peripheral blood mononuclear cells were isolated by density centrifugation with Ficoll-Paque PLUS (GE Healthcare Life Sciences) and suspended in 90% fetal bovine serum (Omega Scientific, Tarzana, CA, USA) and 10% dimethyl sulfoxide (Sigma-Aldrich, St. Louis, MO, USA) for viable storage in liquid nitrogen.

Nurse like cells were generated as described [18]. Briefly, CD14+ cells were isolated by positive selection with magnetic beads (Miltenyi Biotec, San Diego, CA, USA) from PBMCs of healthy donors. Then CD14+ cells were seeded in the presence of CLL cells at 1:20, and incubated for 14 days in complete RPMI supplemented with 10% human serum (Gemini Bioproducts, Sacramento, CA, USA) and 1% penicillin/streptomycin (Gibco, Thermofisher Scientific Carlsbad, CA, USA).

The MEC1-ROR1 CLL cell line was generated as described to resemble ROR1Hi CLL cells [19]. These cells were cultured in RPMI 1640 medium (Gibco) with 10% fetal bovine serum (Gibco) and 1% penicillin/streptomycin (Gibco) and maintained at 37 °C in a humidified atmosphere of 5% CO2.

Human recombinant BAFF was from Tonbo Biosciences (San Diego, CA, USA); BMS-315541, a selective IKKβ inhibitor [20], was provided by Bristol-Myers Squibb (Irvine, CA, USA). The BCL2-antagonist venetoclax and the mTORC1 inhibitor rapamycin were purchased from Selleckchem (Houston, TX, USA). Compound 29 h was synthesized by Jinyi Xu [21]. Chloroquine was from Sigma Aldrich (St. Louis, MO, USA) and N-acetyl L-cysteine from Selleckchem.

Flow cytometry

Flow cytometry was performed as described [22]. Cells were stained for 20 min using the following antibodies: anti-ROR1 mAb (4A5) conjugated with Alexa-647 (4A5-Alexa-647) was generated in Dr. Kipps laboratory. CLL cells were also analyzed for CD5, CD19, CD20, CD23, CD38, and ZAP-70, using monoclonal antibodies (mAbs) conjugated to allophycocyanin (APC), peridinin-chlorophyll-protein (PerCp), fluorescein isothiocyanate (FITC), or phycoerythrin (PE), respectively (Becton Dickinson, Pharmingen, La Jolla, CA, USA). Fluorochrome-conjugated, isotype control mAbs of irrelevant specificity were used in all experiments to control for nonspecific staining. Data were acquired using a dual-laser FACS Calibur (BD Biosciences) and analyzed by FlowJo software (TreeStar, Ashland, OR, USA). Lymphocytes were gated on the basis of their forward-angle light scatter and side-angle light scatter and expression of ROR1 was analyzed on CD19-positive cells. Relative ROR1 expression was calculated by the delta mean fluorescence intensity (∆MFI), which is the mean fluorescence intensity of CLL cells stained for ROR1 minus the mean fluorescence intensity of the same cells stained with a nonspecific isotype matched antibody [22]. A ∆MFI of 32 was used as threshold to stratify the samples in two groups: low ROR1 < 32 ∆MFI (n = 10), and high ROR1 > 32 ∆MFI (n = 26). The ∆MFI values of all samples used in the study are shown in Supplemental Table S1.

Gene expression and gene set enrichment analyses

We analyzed ROR1 expression in a previously published gene expression data from Microarray Innovations in Leukemia study datasets (GSE13204) of 448 CLL patients [23] deposited in PubMed GEO database. Based on the level of ROR1 expression, cases with an expression value above the median were designated as ROR1High (N = 224) and cases with ROR1 expression below the median were designated ROR1Low (N = 224).

We used the GSEA software [24] to perform gene-set-enrichment analyses (GSEA) of NRF2 inducible genes [25], and mTORC1 upregulated genes [26] on microarray GSE13204 dataset. A gene set was considered significant when the false discovery rate (FDR) was less than 25% [24]. The gene-set size (SIZE), the enrichment score (ES), the normalized ES (NES), the nominal p value (NOM p-val), and the FDR q value (FDR q-val) were determined.

In addition, we segregated GSE13204 dataset into two groups designated as ROR1>90% (N = 45), representing the 10% of patients who had CLL cells with the highest ROR1 mRNA, and as ROR1<10% (N = 45), representing the 10% of patients with the lowest ROR1 mRNA. Similarly, GSEA of NRF2 inducible genes was performed on microarray data of ROR1>90% and ROR1<10% cases.

GSEA of RNA-seq data previously deposited in PubMed GEO database (GSE114382) of three CLL samples were collected before therapy (Pre) and at day 28 of Cirmtuzumab treatment (D28) was performed as described [27]. Each D28 sample was collected after patients had received two doses of 16 mg/kg Cirmtuzumab. Total RNA isolation and RNA-seq data analysis was performed as described [27].

Immunoblot analysis

Nuclear fractions were prepared using NE-PER™ Nuclear and Cytoplasmic Extraction kit (Invitrogen, Thermofisher); and whole cell lysates were prepared in NP40 buffer containing protease and a phosphatase inhibitor cocktail. Samples were separated by SDS-PAGE. Proteins were transferred into PVDF membranes, blocked in 5% BSA and 1X TBST for 1 h, and incubated overnight at 4 oC with the following antibodies: phosphorylated p65 (#3031, Cell signaling, Beverly, MA, USA), HDAC (sc-7872, Santa Cruz Biotechnology, Dallas, TX, USA), GAPDH (sc-47724, Santa Cruz Biotechnology), tubulin (T9026, Sigma), p62 (GP62-C, Progen, Long Beach, CA, USA), phosphorylated S6 ribosomal protein (#2211, Cell Signaling), HSP90 (G10419, BD transduction labs), S6 ribosomal protein (#2317, Cell Signaling), NQO1 (#62262, Cell Signaling), SOD1 (sc-11407, Santa Cruz Biotechnology), actin (A4700, Sigma), LC3B (#2775, Cell Signaling), cleaved PARP (#5625, Cell Signaling), PARP (sc-8007, Santa Cruz Biotechnology) and cytochrome C (#11940, Cell Signaling). Secondary antibodies were added for 1 h. at room temperature and detection was done using Clarity™ Western ECL Substrate (Biorad).

Reactive oxygen species (ROS) analysis

CLL cells were seeded on 96 well plates and treated as indicated. Mitochondrial ROS was determined by MitoSox Red Mitochondrial Superoxide indicator (M36008, Invitrogen, Thermo Fisher Scientific), and general oxidative stress by CM-H2DFCDA (C6827, Invitrogen, Thermo Fisher Scientific) as manufacturer’s instructions. Fluorescence intensity was determined using TECAN SPARK plate reader.

CRISPR/Cas9 transfections

Transfections of MEC1-ROR1 cells with p62 or NQO1 CRISPR/Cas9 KO plasmids (Santa Cruz Biotechnology) were done using Lipofectamine 3000 (Thermofisher) according to manufacturer’s instructions. Loss of p62 or NQO1 was confirmed by IB.

RNA isolation and quantitative real-time PCR (QPCR)

RNA was extracted using RNAeasy Mini kit, and cDNA was synthesized using SuperScript VILO cDNA Synthesis Kit (Thermofisher). mRNA expression was determined by QPCR in a CFX96 thermal cycler (Biorad, Hercules, CA, USA) as described [14]. Data are presented in arbitrary units and were calculated by 2ˆ(–delta CT) method. Primer sequences were obtained from the NIH qPrimerDepot and provided by Integrated DNA technologies and are shown in Supplemental Table S2.

Cellular viability

CLL cells or MEC1-ROR1 cells were seeded in 96 well plates and treated as indicated. Cellular viability was determined 24, 36 or 48 hr later using CellTiter-Glo 2.0 reagent (G924B, Promega, San Luis Obispo, CA, USA) accordingly to manufacturer’s instructions. Fluorescence intensity was determined using Infinite M200 Pro TECAN plate reader.

Statistical analysis

Data are shown as mean ± SD or mean ± SEM, as indicated. Statistical significance was determined using two-tailed student’s t-test, and p values lower than 0.05 were considered statistically significant. GraphPad Prism was used for statistical analysis and graphing.

Results

NLC or BAFF induce NF-κB-mediated p62 accumulation in CLL

NLC promote CLL cell survival by secreting factors that activate NF-κB and/or other survival-signaling pathways [8, 28]. Consistent with our previous findings [7], canonical NF-κB signaling was activated in primary CLL B cells cultured with NLC, resulting in nuclear accumulation of phosphorylated p65, which was blocked by the IKKβ inhibitor BMS-345541 [20] (Fig. 1a). As previously seen in myeloid cells [14], NLC-mediated NF-κB activation also led to p62 accumulation in an IKKβ-dependent manner (Fig. 1b, c). Of note, some CLL cells, e.g. CLL #2 in Fig. 1b, exhibited high p62 expression prior to incubation with NLC. But even in such cases the IKKβ inhibitor led to nearly complete disappearance of p62 (Fig. 1b). One of the major factors through which NLC activate NF-κB in CLL cell is BAFF [7, 8]. Accordingly, BAFF-induced p65 phosphorylation and p62 accumulation in CLL cells in a manner sensitive to IKKβ inhibition (Fig. 2a–d). BAFF also induced NF-κB activation and p62 accumulation in the CLL cell line MEC1-ROR1 (Fig. S1a, b). Accumulation of p62 occurs when autophagy is impaired [29]. BAFF stimulation induced the lipidation of LC3, indicating stimulation of autophagy in CLL cells (Fig. 2e, f). Together these results indicate that the accumulation of p62 induced by BAFF is due to increased NF-κB activation rather than impaired autophagy.

Fig. 1. Nurse-like cells induce p62 accumulation via NF-κB activation in CLL cells.

Fig. 1

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a Primary CLL cells were cultured in the presence or absence of NLC, and incubated with or without 5 μM of the IKKβ inhibitor BMS-345541 (BMS) for 24 hr. Nuclear phosphorylated p65 was detected by immunoblotting (IB). b p62 expression in CLL cells treated as described in (a) was examined by IB of whole cell lysates. c Relative p62 accumulation in CLL cells treated as in (a). n = 2. *p < 0.05.

Fig. 2. BAFF induces NF-κB-dependent p62 accumulation in CLL cells.

Fig. 2

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a CLL cells were pretreated with 5 μM BMS-345541 for 1 hr followed by 3 hr incubation with 200 ng/ml BAFF. Nuclear phosphorylated p65 was analyzed by IB. b Relative amounts of phosphorylated p65 in CLL cells from (a). c IB and d densitometric analysis of p62 in whole lysates of CLL cells treated as in (a). n = 3. e IB analysis of lipidated LC3 (LC3-II) in CLL cells pretreated with 10 μM chloroquine (Chlorq) for 2 h and stimulated with BAFF for 3 and 6 hr. f Relative LC3-II amounts in CLL cells treated as in (e). Mean ± sem. n = 5. *p < 0.05; **p < 0.01; ***p < 0.005; ****p < 0.001.

BAFF–induced NF-κB activation activates mTORC1

p62 interacts with and potentiates activation of the mTORC1 complex, an important metabolic sensor and regulator [30]. Consistent with p62 induction, BAFF also increased S6 ribosomal protein phosphorylation in most CLL specimens (Fig. 3a, b), suggesting the activation of S6 kinase, a downstream target for mTORC1 [31]. As observed for p62, BAFF-induced S6 phosphorylation was also IKKβ-dependent (Fig. 3a, b). As expected [31], incubation of CLL cells with rapamycin, an mTORC1 inhibitor, blocked the induction of S6 phosphorylation (Fig. 3c). Rapamycin, however, had no effect on p62 expression (Fig. 3c).

Fig. 3. BAFF leads to NF-κB-dependent mTORC1 activation.

Fig. 3

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a CLL cells were pretreated with 5 μM BMS-345541 for 1 hr followed by 3 hr BAFF treatment. Phosphorylated and total ribosomal S6 protein were examined by IB. Hsp90 was used as loading control. b Relative phosphorylated S6 amounts of CLL cells treated as in (a). Mean ± sem. n = 3. *p < 0.05. c CLL cells were pretreated with rapamycin for 1 hr and then stimulated with BAFF as indicated. Presence of p62, non-phosphorylated and phosphorylated ribosomal S6 protein were analyzed by IB.

CLL cells with high ROR1 expression exhibit enhanced p62 accumulation and NRF2 activation

CLL patients with leukemic cells expressing high levels of ROR1 exhibit enhanced disease-progression and shorter overall survival relative to ROR1-low patients [22]. We classified CLL cells based on ROR1 surface expression as ROR1Lo or ROR1Hi CLL cells (Supplemental Table S1), as done previously [22]. We then compared BAFF receptors mRNA amounts in ROR1Lo to ROR1Hi CLL cells. ROR1Hi CLL cells showed significantly higher amounts of TNFRSF17 mRNA, encoding the BAFF receptor BCMA, relative to ROR1Lo cells (Fig. 4a). Expression of TNFRSF13C and TNFRSC13B mRNAs, encoding BAFF-R and TACI, respectively, did not differ between the two cell populations (Fig. 4a). Relative to ROR1Lo CLL cells, ROR1Hi CLL cells also expressed significantly higher amounts of p62 (Fig. 4b and Fig. S2a). Consistently, ROR1Hi cells exhibited higher mRNA and protein expression of NRF2-target genes (Fig. 4c, d), suggesting a correlation between p62 expression and NRF2 activation. As expected from elevated SOD1 and NQO1 amounts, ROR1Hi CLL cells exhibited lower mitochondrial ROS (mt-ROS) accumulation than ROR1Lo CLL cells (Fig. 4e), while no significant changes were detected in total cellular ROS (Fig. S2b). Similarly, BAFF stimulation of CLL cells reduced mt-ROS accumulation (Fig. S2c, d). We also analyzed a published gene expression dataset, GSE13204 [23], designating CLL cells whose ROR1 mRNA amounts were above the median as ROR1High (n = 224), and cells with ROR1 mRNA expression below the median as ROR1Low (n = 224). The NRF2 regulated SQSTM1, NQO1 and HMOX1 mRNAs were significantly more abundant in ROR1High CLL than in ROR1Low CLL cells (Fig. 4f). In addition, we performed gene expression analysis by comparing ROR1>90% (n = 45), representing the top 10% of cells with highest ROR1 mRNA, to ROR1<10% (n = 45), representing the bottom 10% of CLL cells in respect to ROR1 mRNA. This analysis revealed that SQSTM1, NQO1 and HMOX1 were expressed at higher amounts in ROR1>90% cells relative to ROR1<10% cells (Fig. S2e). By gene set enrichment analysis (GSEA) we further examined whether NRF2 target genes [25], were enriched in ROR1High or ROR1>90% CLL populations compared to ROR1Low or ROR1<10% CLL. In both comparisons, GSEA revealed that NRF2 target genes were enriched in CLL cells with high ROR1 mRNA (Fig. 4g and Fig. S2f). Collectively, these data indicate that the p62-NRF2 cascade is upregulated in CLL cells with high expression of ROR1 and suggest that it may contribute to their improved survival and treatment resistance [22]. In addition to NRF2 target genes, the mTORC1 activation signature [26], was enriched in ROR1High relative to ROR1Low CLL cells (Fig. S2g, h). these results suggest a role for mTORC1 activation in ROR1High CLL cells.

Fig. 4. NRF2 signaling is upregulated in CLL cells with high ROR1 expression.

Fig. 4

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a mRNA expression of the TNFRSF13C, TNFRSF17, TNFRSF13B genes which code for BAFF-R, BCMA and TACI, respectively, was determined by QPCR in ROR1Hi (n = 13) and ROR1Lo CLL cells (n = 6). Mean ± sem. b Representative IB showing p62 expression in ROR1Hi and ROR1Lo CLL cells. c Expression of NQO1, GPX2, GSTM1, SOD1, MDM2 mRNAs in ROR1Hi (n = 13) and ROR1Lo (n = 6) CLL cells analyzed by QPCR. Mean ± sem. d p62, NQO1, SOD1 expression in ROR1Hi and ROR1Lo CLL cells was determined by IB analysis. e MitoSOX relative fluorescence in ROR1Hi versus ROR1Lo CLL cases. Mean ± sem. n = 6. f SQSTM1, NQO1, and HMOX1 mRNA log2 relative expression data from 224 ROR1High CLL cases and 224 ROR1Low CLL cases as log2 relative expression. g GSEA plot of NRF2-inducible genes on microarray data available in GEO database (GSE13204) comparing ROR1High versus ROR1Low CLL cases. Size, NES and FDR q value are as indicated. h CLL cells were pretreated with BMS-345541 for 1 hr and stimulated with 200 ng/ml BAFF for 5 hr. NQO1 mRNA was examined by QPCR. Mean ± sd. n = 2 CLL cell samples. i p62 and NQO1 expression in CRISPR-Ctrl and CRISPR-p62 MEC1-ROR1 cells were detected by IB. *p < 0.05; **p < 0.01; ***p < 0.005; ****p < 0.001; ns, not significant.

Consistent with its ability to induce p62 accumulation, BAFF induced expression of the NRF2 target gene NQO1 in an NF-κB-dependent manner (Fig. 4h). Knockdown of p62 in MEC1-ROR1 cells confirmed that expression of NQO1 was indeed dependent on p62 (Fig. 4i).

Cirmtuzumab reduces the NRF2 and mTORC1 signatures in CLL patients

Cirmtuzumab, an antibody specific for ROR1, has shown activity in phase I clinical trials, reducing leukemic cell count and attenuating ROR1-dependent signaling [27]. Using GSEA we examined whether the NRF2 and/or mTORC1 signatures were altered in CLL cells isolated from patients treated with cirmtuzumab. CLL cells collected from patients before and 28 days after initiation of treatment were subjected to negative selection and were analyzed by RNA-seq [27]. Cirmtuzumab treatment reduced mTORC1 induced genes (Fig. S3a), indicating that mTORC1 pathway is a downstream signaling of ROR1. Although cirmtuzumab treatment reduced the NRF2-target-gene-expression signature as well (Fig. 5a), we did not observe reduced expression of p62 or NQO1 in all samples examined (Fig. 5b), suggesting that the link between the p62-NRF2 cascade and ROR1 signaling in vivo may also be affected by other factors, such as BAFF.

Fig. 5. Cirmtuzumab inhibits NRF2 signaling in vivo.

Fig. 5

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a GSEA plot of NRF2-inducible genes on the transcriptome of three paired CLL samples pre- and at day 28 (D28) post- cirmtuzumab treatment. Size, NES and FDR q value are as indicated. b IB analysis of p62 and NQO1 in three CLL cases pre- and at D28 post- cirmtuzumab treatment.

Targeting ROR1Hi CLL cells with NRF2-activatable prodrug

ROR1Hi CLL cells expressed higher levels of NRF2-target genes, including NQO1, and maintained lower amounts of mt-ROS in steady state than low ROR1-expressing cells (Fig. 4b–g). NRF2-signaling protects cancer cells from ROS toxicity [32], but systemic treatment with NRF2 inhibitors may result in undesired collateral toxicity. We therefore took advantage of elevated NRF2 activity and NQO1 expression in CLL cells to test their sensitivity to bioreductive prodrugs that are specially activated by NQO1, such as the oridonin derivative compound 29h [21]. Compound 29h exhibits potent cytotoxic activity only against cells that express high amounts of NQO1, which is required for its metabolic activation [21]. Accordingly, ROR1Hi CLL cells with abundant NQO1 expression were more susceptible to killing by compound 29h compared to low ROR1 or  NQO1 expressing CLL cells (Fig. 6a and Fig. S4a). Treatment of NQO1-high CLL cells with compound 29h, resulted in PARP cleavage and accumulation of cytoplasmic cytochrome C, both of which suggest activation of apoptosis (Fig. 6b). We also examined whether expression of NQO1 influenced the sensitivity of CLL cells to the ROS-inducing drug, venetoclax [33, 34]. We found that knockdown of NQO1 or p62 in MEC1-ROR1 CLL cells increased the cytotoxic activity of venetoclax (Fig. 6c and Fig. S4b). Combined treatment with compound 29h and venetoclax resulted in greater cytotoxicity for high-NQO1-expressing CLL cells than treatment with either agent alone (Fig. 6d–f). Combination of compound 29h with venetoclax also increased the accumulation of mt-ROS (Fig. 6g). Pretreatment with antioxidants reduced oxidative stress (Fig. S4c, d) but did not completely rescue cell viability (Fig. 6h).

Fig. 6. NRF2 activation protects CLL cells that express high ROR1 from the ROS-inducing drug venetoclax.

Fig. 6

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a Relative viability of ROR1Hi and ROR1Lo CLL cells pretreated with BAFF for 1 hr and treated with 0.25 μM 29 h for 24 hr. b IB analysis of cleaved-PARP (Cl-PARP) and cytoplasmic cytochrome C (Cyt. C) in CLL cells that are either NQO1 high or low and treated as in (a). c Relative viability of CRISPR-Ctrl and CRISPR-NQO1 MEC1-ROR1 cells treated with 1 nM venetoclax for 48 hr. d Relative viability of ROR1Hi CLL cells stimulated with BAFF for 1 hr and then treated with 1 nM venetoclax and 0.25 μM 29h either alone or in combination for 36 hr. n = 12. e IB analysis of cleaved PARP (Cl-PARP) and total PARP (t-PARP) in ROR1Hi CLL cells treated as in (d). f Relative cleavage of PARP in ROR1Hi CLL cells treated as in (d). n = 5. g MitoSOX relative fluorescence in ROR1Hi CLL cells treated as in (d). n = 4. h Relative viability of ROR1Hi CLL cells pretreated with 1 μM N-acetyl L-cysteine (NAC) for 1 hr and then stimulated with BAFF and treated with 1 nM venetoclax and 0.25 μM compound 29h for 36 hr. n = 8. *p < 0.05; **p < 0.01; ***p < 0.005; ****p < 0.001; ns, not significant. i Schematic working model summarizing our results.

Discussion

NF-κB activation is a common feature of CLL and other leukemias that accounts for enhanced proliferative activity and reduced apoptosis [35]. In contrast to other leukemias, recurrent mutations that result in active NF-κB signaling are quite rare in CLL and by-and-large NF-κB in CLL is activated in response to microenvironmental factors, such as BAFF [7]. Regardless of the mechanism responsible for NF-κB activation, our understanding of the effectors through which it contributes to the malignant phenotype of CLL is incomplete. The results described in this study indicate that the signaling adaptor p62/SQSTM1 provides an important link between NF-κB and another prominent transcription factor NRF2, which was recently found to be activated in various solid-tissue malignancies [16, 36–39]. In addition to its ability to re-wire tumor cell metabolism [40], NRF2 protects cancer cells from drug-induced oxidative stress by inducing expression of ROS detoxifying enzymes [41–43]. In CLL cells, p62-mediated NRF2 activation also contributes to drug resistance, especially in ROR1Hi CLL cells, which express considerably higher amounts of p62 than ROR1Lo CLL cells. It should be noted, however, that NF-κB only controls expression of SQSTM1 mRNA, but the amount of p62 expressed by any given cell depends on other factors, specially the rate of autophagy, through which p62 is degraded [11]. Interestingly, BAFF treatment enhanced rather than inhibited autophagic flux, suggesting that its ability to induce p62 accumulation is mainly dependent on NF-κB activation. Recent studies have shown elevated expression of p62 in various solid malignancies, including hepatocellular carcinoma (HCC) and pancreatic ductal adenocarcinoma (PDAC), where p62 was found to be intimately involved in malignant progression and served as an important NRF2 activator [11, 16, 17]. Although we cannot rule out that other activators or molecules related with enhanced NF-κB signaling play a part in p62-NRF2 cascade activation, we found that expression of p62 could be induced by receptors for BAFF or other signaling receptors, such as ROR1. Of note, consistent with activation of NRF2 signaling and a more efficient antioxidant response, both ROR1Hi CLL cells and CLL cells stimulated with BAFF exhibited lower mt-ROS amounts in steady state than ROR1Lo CLL cells or unstimulated cells respectively.

Once expressed in sufficiently high amounts, p62 drives activation of NRF2 through the sequestration of KEAP1 [11], and potentiates mTORC1 activation, a signaling pathway that can be blocked by the ROR1 antibody cirmtuzumab. Although the contribution of mTORC1 to NRF2 activation and the CLL malignant phenotype remains to be determined, our results show that NRF2 activation may confer a drug-resistant phenotype in part through induction of NQO1, whose ablation enhanced the susceptibility of CLL cells to killing by the ROS-producing BCL2-inhibitor venetoclax. However, elevated expression of NQO1 also renders ROR1Hi CLL cells more sensitive to compound 29 h, a prodrug that is activated by an NQO1-dependent mechanism [21]. Importantly, the combination of compound 29 h with venetoclax, not only potentiates oxidative stress in ROR1Hi CLL cells but also reduces their viability. Therefore, we suggest that elevated NQO1 expression may represent an “Achilles Heel” of ROR1Hi CLL cells, which are generally more aggressive than ROR1Lo CLL cells [22]. Of note, CLL treatment with two doses of 16 mg/kg cirmtuzumab reduces expression of p62 and NQO1 only in some patients, suggesting that some ROR1 Hi CLL cells may also be stimulated by factors other than ROR1, for instance BAFF which sustains p62- and NRF2-signaling independent of ROR1.  In a similar vein, activation of NF-κB signaling by exposure to BAFF or TNF increases survival of mantle cell lymphoma cells even when treated with another ROR1 monoclonal antibody 2A2, which also inhibits Wnt5a-ROR1 signaling in ROR1+ neoplastic cells [44], acting like cirmtuzumab [27, 45]. Conceivably, compound 29h could be used in combination with cirmtuzumab or other anti-ROR1 antibodies to selectively target ROR1Hi CLL cells.

In summary, in this study we revealed that activation of the NF-κB dependent p62-NRF2 cascade contributes to the survival and therapy resistance of CLL cells that express high-levels of ROR1 and that treatment with cirmtuzumab, alone or in combination with compound 29h, could target ROR1Hi CLL cells and enhance their susceptibility to venetoclax therapy (Fig. 6i).

Supplementary information

Supplemental Table S1 (9.4KB, xlsx)
Supplemental Table S2 (9.8KB, xlsx)
Supplemental Figure S1 (2MB, tif)
Supplemental Figure S2 (2MB, tiff)
Supplemental Figure S3 (2MB, tif)
Supplemental Figure S4 (2MB, tif)

Acknowledgements

We thank eBioscience, Cell Signaling Technologies, Santa Cruz Technologies and Promega for gifts of reagents. We also thank Christina Dooka, Xuemei Piao, Monica Spydell and Tuan Tran for their excellent technical assistance. This work was supported by SCOR grant (7005-14) from the Leukemia and Lymphoma Society to TJK and MK; NIH (R01AI43477 and R37AI043477), NIEHS Superfund basic research program (P42ES010337), The Rotary Coins for Alzheimer’s Research Trust Fund (CART Fund) awards to MK, who is an American Cancer Research Society Professor and holds the Ben and Wanda Hildyard Chair for Mitochondrial and Metabolic Disease. This work was also supported by grants R37-CA049870 and R01-CA236361 to TJK. ES-L was supported by Sara Borrell fellowship from ISCIII/MICINN. EMG was supported by the Blood Cancer research Fund. LA was supported by the International Cancer Research Fellowship (iCARE) and AIRC co-founded by the European Union, and a C3 Pedal the Cause grant.

Author contributions

ES-L, EMG, TJK, and MK conceived the project. ES-L and EMG designed and performed most of the experiments. LA and NS provided assistance with experiments and analyses. LZR provided and characterized primary CLL cells. JX and BS designed and provided prodrug compound 29h. LA., LZR, TJK, and MK provided advice. TJK and MK supervised the project. ES-L, EMG, TJK, and MK wrote the manuscript with input from all authors.

Compliance with ethical standards

Conflict of interest

Cirmtuzumab was developed in the Kipps laboratory and licensed by the University of California, San Diego to Oncternal, which has provided stock/options to the university and to TJK.

Footnotes

Edited by G. Melino

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

These authors contributed equally: Elsa Sanchez-Lopez, Emanuela M. Ghia

Supplementary information

The online version of this article (10.1038/s41418-020-0496-1) contains supplementary material, which is available to authorized users.

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Associated Data

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Supplementary Materials

Supplemental Table S1 (9.4KB, xlsx)
Supplemental Table S2 (9.8KB, xlsx)
Supplemental Figure S1 (2MB, tif)
Supplemental Figure S2 (2MB, tiff)
Supplemental Figure S3 (2MB, tif)
Supplemental Figure S4 (2MB, tif)

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