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. Author manuscript; available in PMC: 2020 Jun 29.
Published in final edited form as: Pediatr Blood Cancer. 2019 May 21;66(8):e27819. doi: 10.1002/pbc.27819

Comprehensive evaluation of context dependence of the prognostic impact of MYCN amplification in neuroblastoma: A report from the International Neuroblastoma Risk Group (INRG) project

Kevin Campbell 1,#, Derek Shyr 1,#, Rochelle Bagatell 2, Matthias Fischer 3, Akira Nakagawara 4, Adela Canete Nieto 5, Garrett M Brodeur 2, Katherine K Matthay 6, Wendy B London 1,#, Steven G DuBois 1,#
PMCID: PMC7323455  NIHMSID: NIHMS1600389  PMID: 31115156

Abstract

Background:

MYCN amplification (MYCN-A) is an established adverse prognostic factor in neuroblastoma. The extent to which the prognostic impact of MYCN-A depends on other factors has not been fully characterized.

Patients and methods:

Using the International Neuroblastoma Risk Group database, we constructed Cox models of overall survival (OS) to obtain hazard ratios of the effect of MYCN-A within subgroups defined by other prognostic factors. Cox models assessed the degree to which the prognostic impact of MYCN-A was modulated by each other covariate. We used absolute hazard ratio (HR) differences to construct classification trees to identify subgroups with greatest differential prognostic effect of MYCN-A.

Results:

In a cohort of 6223 patients with known MYCN status, the OS hazard ratio associated with MYCN-A was 6.3 (95% confidence interval 5.7-7.0, P < .001). Age at diagnosis conferred the largest HR absolute difference for MYCN-A between subgroups (HR absolute difference 16.6; HRs for MYCN-A of 19.6 for <18 months, 3.0 for ≥18 months). MYCN-A remained significantly prognostic of OS after controlling for other factors, abrogating their prognostic strength. Patients whose outcome was most impacted by MYCN status were those who were <18 months, had high mitosis karrhyohexis index (MKI) and low ferritin.

Conclusion:

The prognostic strength of MYCN-A varies depending on which patient subgroup defined by other neuroblastoma risk factors is examined, with greatest strength in patients with otherwise favorable features. MYCN-A has little effect within some subgroups, aiding clinical decision-making if MYCN status cannot be assessed. Subgroups where MYCN-A has large effect may be prioritized for agents targeting Myc family proteins.

Keywords: amplification, context, MYCN, neuroblastoma, prognosis

1 |. INTRODUCTION

The classification and treatment approach to neuroblastoma, the most common extracranial solid tumor of childhood, is complicated by the clinical heterogeneity of the disease. MYCN status, determined at the time of diagnosis, is an important adverse prognostic factor.1 It has been over three decades since the historic discoveries linking amplification of the oncogene MYCN with rapid tumor progression,24 resulting in MYCN status as a critical prognostic factor that remains a cornerstone of current risk classification systems.5

Previous work from our group identified associations between other known features of neuroblastoma and differential rates of MYCN amplification (MYCN-A). MYCN-A demonstrates complex and differential associations with many other prognostic factors.6,7 Few studies have examined the prognostic context of these associations in specific subpopulations of neuroblastoma, demonstrating the presence of MYCN-A appears to have a greater adverse prognostic impact in patients with otherwise favorable features (eg, younger age and lower stage).811 In contrast, in older patients with higher stage disease, the prognostic impact of MYCN-A has been more modest or even undetectable.5,12 For example, one study found that MYCN status did not significantly impact overall survival (OS) in older patients with stage 4 disease.13 Additionally, two recent studies did not demonstrate a prognostic effect of MYCN-A on patients with high-risk disease.14,15

A comprehensive investigation into the context dependence of MYCN status is needed to provide clinicians a more nuanced understanding of its prognostic impact in the setting of other clinical, biological, and treatment factors. Further, as treatment strategies have evolved, it is unclear whether the prognostic impact of MYCN status has evolved as well. In this study, we utilized the International Neuroblastoma Risk Group (INRG) database to perform a comprehensive evaluation of the variation of the prognostic impact of MYCN-A. This analysis, while primarily serving to provide improved understanding of MYCN status as a prognostic factor in neuroblastoma, may also aid our understanding of the important interactions between MYCN status and other clinical, biological, and treatment factors. Discerning differences in the degree to which MYCN-A adversely impacts prognosis may enable providers to more accurately weigh MYCN status when assessing an individual patient’s risk of treatment failure.

2 |. METHODS

2.1 |. Patients

Patients diagnosed with neuroblastoma between 1990 and 2016 were selected from the INRG database and were eligible for the analysis if they had known outcome and MYCN status (coded as amplified vs nonamplified). There were no other inclusion or exclusion criteria for this analysis.

2.2 |. Covariates

MYCN status was the primary predictor variable of interest for this analysis. MYCN status was dichotomized as amplified (MYCN-A) versus nonamplified (MYCN-NA). MYCN status was determined according to local standards as previously described.6

Clinical factors of interest, at the time of diagnosis, included sex, age, International Neuroblastoma Staging System (INSS) stage (dichotomized as stage 4 vs all other stages including 4S),16 primary site, presence of bone marrow metastases, presence of bone metastases, lactate dehydrogenase (LDH) level (dichotomized using updated cut point as previously17), ferritin level (dichotomized using updated cut point as previously17), and year of diagnosis (dichotomized around the year 1999 when the addition of high-dose therapy with autologous stem cell rescue became routine). Biological covariates of interest included ploidy (hyperdiploidy = any DNA index >1.0), 1p loss of heterozygosity (LOH), 11q aberration (unbalanced LOH),18 presence of any segmental chromosomal aberration (SCA) (either 1p LOH and/or 11q LOH), International Neuroblastoma Pathology Classification histologic classification,19 diagnostic category (neuroblastoma and nodular ganglioneuroblastoma vs all others), MKI, and grade of differentiation.

OS was the sole clinical outcome of interest. OS time was calculated from the time from diagnosis to death, with surviving patients censored at time of last follow-up.

2.3 |. Statistical analyses

The INRG cohort of 14501 patients who met eligibility for this analysis was randomly and equally divided into a Test cohort and a Validation cohort. Except where noted, analyses were performed first in the Test cohort and then confirmed in the Validation cohort.

Point estimates of OS were calculated using the methods of Kaplan and Meier,20 with standard errors according to the methods of Greenwood.21

We used absolute hazard ratio differences to construct classification trees to identify subgroups with the strongest and weakest prognostic effect of MYCN-A.

Starting from the overall Test cohort, we used a series of univariate Cox models of OS to calculate the HR for MYCN within each of the subgroups for each factor. For example, the HR for MYCN was calculated within patients <18 months of age at diagnosis, and also within ≥18 months. Then we calculated the absolute difference in the HR (HRdiff) by subtracting the HR of the group with more favorable outcome from the HR of the group with less favorable outcome, for example, HRdiff = (MYCN HR for age ≥18 months) – (MYCN HR for age < 18 months). The factor with the largest HRdiff was selected to form the first split/branch of the classification tree. This procedure was repeated within each branch until the sample size became too small (subgroup <5), HRdiff < 1, or until there were no further subgroups in which MYCN was significant. Data from the Validation cohort were then placed into categories according to the tree created from the Test cohort to determine if there was evidence to support the split/branch decisions made based on the Test cohort.

In addition, we used bivariate Cox models to assess the extent to which each covariate impacted the HR for death associated with MYCN-A. We also used Cox models that included an interaction term of [MYCN status] × [covariate] to formally assess for modification of the prognostic impact of MYCN-A by each covariate.

3 |. RESULTS

3.1 |. Patient characteristics

In the Test cohort (n = 7251), MYCN-A was observed in 928 cases (12.8%), MYCN-NA in 5295 cases (73.0%), and MYCN status was unknown in 1028 cases (14.2%). Cases with unknown MYCN status were excluded from further analysis. Details of the clinical and biological features for the Test and Validation cohorts are shown in Tables 1 and S1, respectively. Features of patients universally considered high risk (patients with metastatic disease diagnosed ≥18 months of age) for the Test and Validation cohorts are shown in Table S2.

TABLE 1.

Characteristics of the Test cohort according to MYCN status

Variable All patients
n (%)
(n = 7251)
MYCN-A
n (%)
(n = 928)
MYCN-NA
n (%)
(n = 5295)
MYCN unknowna
n (%)
(n = 1028)
Male 2535 (53) 371 (56) 1895 (52) 269 (56)
Female 2241 (47) 296 (44) 1732 (48) 213 (44)
(Unknown) 2475 261 1668 546

Age ≥18 months 3290 (45) 587 (63) 2109 (40) 594 (58)
Age <18 months 3961 (55) 341 (37) 3186 (60) 434 (42)

INSS stage 4 2567 (37) 667 (73) 1401 (27) 499 (53)
All other stages 4455 (63) 245 (27) 3765 (73) 445 (47)
(Unknown) 229 16 129 84

Adrenal primary 2777 (43) 460 (57) 1927 (40) 390 (48)
Other primary sites 3640 (57) 343 (43) 2868 (60) 429 (52)
(Unknown) 834 125 500 209

Thoracicprimary 1233 (19) 39 (5) 1041 (22) 153 (18)
Other primary sites 5198 (81) 765 (95) 3755 (78) 678 (82)
(Unknown) 820 124 499 197

Bone metastasis 1024 (29) 247 (49) 524 (22) 253 (40)
No bone metastasis 2547 (71) 257 (51) 1912 (78) 378 (60)
(Unknown) 3680 424 2859 397

Bone marrow metastasis 1347 (38) 315 (62) 728 (30) 304 (48)
No bone marrow metastasis 2229 (62) 190 (38) 1706 (70) 333 (52)
(Unknown) 3675 423 2861 391

High LDH ≥ 1400 U/L 588 (16) 278 (66) 215 (8) 95 (15)
Low LDH < 1400 U/L 3024 (84) 146 (34) 2351 (92) 527 (85)
(Unknown) 3639 504 2729 406

High ferritin ≥30 ng/mL 2055 (58) 298 (78) 1433 (55) 324 (54)
Low ferritin <30 ng/mL 1507 (42) 85 (22) 1150 (45) 272 (46)
(Unknown) 3689 545 2712 432

Diploid 1350 (31) 300 (54) 1001 (28) 49 (39)
Hyperdiploid 2937 (69) 253 (46) 2608 (72) 76 (61)
(Unknown) 2964 375 1686 903

LOH/aberration at 1p 373 (19) 174 (73) 183 (11) 16 (28)
No 1p LOH/aberration 1596 (81) 66 (27) 1488 (89) 42 (72)
(Unknown) 5282 688 3624 970

Aberration at 11q 217 (15) 16 (10) 199 (16) 2 (12)
No 11q Aberration 1184 (85) 138 (90) 1032 (84) 14 (88)
(Unknown) 5850 774 4064 1012

Any SCA 539 (36) 176 (83) 346 (27) 17 (68)
No SCA 963 (64) 36 (17) 919 (73) 8 (32)
(Unknown) 5749 716 4030 1003

Unfavorable histology 1630 (36) 477 (89) 1018 (28) 135 (45)
Favorable histology 2882 (64) 61 (11) 2655 (72) 166 (55)
(Unknown) 2739 390 1622 727

High MKI 491 (15) 261 (59) 185 (7) 45 (19)
Low/intermediate MKI 2874 (85) 181 (41) 2506 (93) 187 (81)
(Unknown) 3886 486 2604 796

Undiff/poorly differentiated 3035 (85) 477 (98) 2316 (82) 242 (89)
Differentiating 536 (15) 12 (2) 493 (18) 31 (11)
(Unknown) 3680 439 2486 755

Neuroblastoma and GNBL, nodular 3955 (91) 521 (99) 3029 (90) 405 (89)
Ganglioneuroblastoma; intermixed, maturing subtype, well differentiated 397 (9) 6 (1) 342 (10) 49 (11)
(Unknown) 2899 401 1924 574

Diagnosed <1999 3224 (44) 415 (45) 2107 (40) 702 (68)
Diagnosed ≥1999 4027 (56) 513 (55) 3188 (60) 326 (32)

Abbreviations: SCA, segmental chromosomal aberration of either 1p and/or 11q; Undiff, undifferentiated.

a

Two-sided chi-squared test identified a significantly higher proportion of patients with “MYCN unknown” than “MYCN known” (P < .05) for: age ≥18 months; INSS stage 4; presence of bone metastasis; presence of bone marrow metastasis; presence of any SCA; unfavorable histology; and diagnosed <1999.

3.2 |. Prognostic impact of MYCN amplification varies by context

In the overall Test cohort, the hazard ratio for death for patients with MYCN-A was 6.3 (95% confidence interval 5.7-7.0, P < .001) compared to the reference group of MYCN-NA. MYCN-A remained prognostic within each clinical or biological subgroup, though the prognostic impact was not uniform across subgroups (Table 2). MYCN-A generally had the strongest adverse prognostic impact in otherwise more favorable subgroups of patients (eg, younger age or lower stage), while the prognostic impact was generally weaker among unfavorable subgroups of patients (eg, older age or INSS stage 4).

TABLE 2.

Differential effects of MYCN amplification on overall survival (OS) according to other clinical and biological variables for Test cohort

Variable 5-year OS for MYCN-A (%) 5-year OS for MYCN-NA (%) OS hazard ratio (95% CI) P-value Hazard ratio absolute difference Δa
Overall 37 ± 1.7 85 ± 0.5 6.3 (5.7, 7.0) <0.0001 NA

Sex Male 37 ± 3 84 ± 1 6.0 (5.0, 7.2)   <.00001   1.3
Female 37 ± 3 87 ± 1 7.3 (6.0, 8.9) <0.0001

Age ≥18 months 34 ± 2 67 ± 1 3.0 (2.7, 3.4) <0.0001 16.6
<18 months 41 ± 3 96 ± 0.4 19.6 (15.6, 24.5) <0.0001

INSS stage Stage 4 30 ± 2 58 ± 1 2.5 (2.2, 2.8) <0.0001   9.9
All other stages 56 ± 3 96 ± 0.4 12.4 (9.7, 15.8) <0.0001

Primary site adrenal Adrenal 36 ± 2 80 ± 1 5.0 (4.3, 5.8) <0.0001   2.0
Other sites 44 ± 3 89 ± 1 7.0 (5.9, 8.4) <0.0001

Primary site thoracic Thoracic 61 ± 8 92 ± 1 6.1 (3.5, 10.5) <0.0001   0.5
Other sites 38 ± 2 83 ± 1 5.6 (4.9, 6.3) <0.0001

Bone metastasis Present 28 ± 3 49 ± 2 2.1 (1.7, 2.5) <0.0001   4.8
Absent 44 ± 3 89 ± 1 6.9 (5.6, 8.5) <0.0001

Bone marrow metastasis Present 29 ± 3 53 ± 2 2.3 (1.9, 2.7) <0.0001   5.9
Absent 49 ± 4 92 ± 1 8.2 (6.3, 10.7) <0.0001

LDH ≥1400 U/L 29 ± 3 52 ± 4 1.9 (1.5, 2.4) <0.0001   3.6
<1400 U/L 47 ± 4 86 ± 1 5.5 (4.3, 7.1) <0.0001

Ferritin ≥30 ng/mL 34 ± 3 78 ± 1 4.7 (3.9, 5.6) <0.0001   6.6
<30 ng/mL 43 ± 6 92 ± 1 11.3 (7.9, 16.2) <0.0001

Ploidy Diploid 38 ± 3 77 ± 2 4.2 (3.5, 5.2) <0.0001   4.3
Hyperdiploid 42 ± 3 90 ± 1 8.5 (6.9, 10.4) <0.0001

1p aberration Present 39 ± 4 71 ± 4 3.0 (2.1, 4.2) <0.0001   3.6
Absent 44 ± 7 87 ± 1 6.6 (4.5, 9.5) <0.0001

11q aberration Present 43 ± 16 63 ± 4 2.3 (1.1, 4.9)   0.03   8.0
Absent 41 ± 5 91 ± 1 10.3 (7.4, 14.2) <0.0001

SCA Any 39 ± 4 67 ± 3 2.7 (2.1, 3.6) <0.0001   8.0
No 47 ± 10 92 ± 1 10.7 (6.1, 18.7) <0.0001

INPC histology Unfavorable 38 ± 2 66 ± 2 2.6 (2.2, 3.0) <0.0001 13.2
Favorable 62 ± 6 97 ± 0.4 15.8 (9.9, 25.3) <0.0001

MKI High 38 ± 3 75 ± 3 3.7 (2.6, 5.1) <0.0001   3.4
Low / Intermediate 43 ± 4 88 ± 1 7.1 (5.6, 9.0) <0.0001

Grade of differentiation Undiff./poorly differentiated 39 ± 2 85 ± 1 5.9 (5.0, 6.9) <0.0001   9.5
Differentiating 48 ± 15 95 ± 1 15.4 (6.2, 38.5) <0.0001

Diagnostic category Neuroblastoma and GNBL, nodular 39 ± 2 86 ± 1 6.4 (5.5, 7.4) <0.0001   2.6
Otherb 83 ± 15 97 ± 1 9.0 (1.1, 75.3)   0.0417

Year of diagnosis <1999 30 ± 2 82 ± 1 6.0 (5.1, 6.9) <0.0001   0.5
≥1999 43 ± 2 87 ± 1 6.5 (5.8, 7.3) <0.0001

Note. Hazard ratios reflect outcome for patients with MYCN amplified (MYCN-A) tumors relative to patients with MYCN non-amplified (MYCN-NA) tumors (reference level).

Abbreviations: CI, confidence interval; GNBL, ganglioneuroblastoma; INPC, International Neuroblastoma Pathology Classification; SCA, segmental chromosome aberration; Undiff., undifferentiated.

a

The reference level for calculation of the hazard ratios is MYCN not amplified. The HR absolute difference (HRdiff) is calculated by subtracting the HR for the prognostic factor subgroup that has the better outcome from the subgroup with the worse outcome.

b

Ganglioneuroblastoma; intermixed, maturing subtype, well differentiated.

Age at diagnosis was the factor with the largest HRdiff (16.6; 19.6 [<18 months] vs 3.0 [≥18 months]) (Table 2). Thoracic primary site was the factor with the smallest HRdiff (0.5; 6.1 [thoracic] vs 5.6 [other sites]). These analyses were repeated in the Validation cohort and similar patterns were observed (Table S3).

We repeated this analysis focused exclusively on the subset of patients in the Test cohort with high-risk disease (Table 3). In this subgroup, MYCN-A was again significantly prognostic in each clinical or biological subgroup, though HRs were somewhat attenuated compared to the overall Test cohort. The HRdiffs were likewise attenuated compared to analyses in the overall Test cohort. These analyses were repeated in the Validation cohort and similar patterns were observed (Table S4).

TABLE 3.

Differential effects of MYCN amplification on overall survival (OS) according to other clinical, biological, and treatment variables for high-risk patients in the Test cohort

Variable MYCN-A
n
MYCN-NA
n
5-year OS for MYCN-A (%) 5-year OS for MYCN-NA (%) OS hazard ratio (95% CI) P-value Hazard ratio absolute difference Δa
Overall 443 880 29 ± 2.3 40 ± 1.8 1.6 (1.4, 1.8) <0.0001 NA

Sex Male 189 375 33 ± 3.6 44 ± 2.7 1.6 (1.3, 2.0) <0.0001 0.2
Female 150 254 28 ± 3.9 44 ± 3.3 1.8 (1.4, 2.3) <0.0001

Age <18 months N/A N/A N/A N/A N/A N/A N/A
≥18 months 443 880 29 ± 2.3 40 ± 1.8 1.6 (1.4, 1.9) <0.0001

INSS stage Stage 4 443 880 29 ± 2.3 40 ± 1.8 1.6 (1.4, 1.9) <0.0001 N/A
All other stages N/A N/A N/A N/A N/A N/A

Primary site adrenal Adrenal 227 382 27 ± 3.1 35 ± 2.6 1.5 (1.2, 1.8) <0.0001 0
Other sites 151 359 34 ± 4.1 44 ± 2.8 1.5 (1.1, 1.9) 0.0024

Primary site thoracic Thoracic 18 77 41 ± 13.1 43 ± 6.0 1.1 (0.5, 2.2) 0.8228 0.4
Other sites 360 665 30 ± 2.5 39 ± 2.1 1.5 (1.3, 1.8) <0.0001

Bone metastasis Present 158 366 24 ± 3.5 33 ± 2.6 1.6 (1.3, 2.0) <0.0001 0
Absent 98 174 31 ± 4.8 42 ± 3.9 1.6 (1.2, 2.2) 0.0024

Bone marrow metastasis Present 209 437 24 ± 3.0 32 ± 2.3 1.6 (1.3, 1.9) <0.0001 0.1
Absent 49 107 35 ± 7.0 54 ± 5.0 1.7 (1.1, 2.6) 0.023

LDH ≥1400 U/L 137 88 21 ± 3.6 23 ± 4.9 1.3 (0.9, 1.7) 0.13 0.6
<1400 U/L 48 303 19 ± 6.3 36 ± 3.0 1.9 (1.3, 2.7) 0.0009

Ferritin ≥30 ng/mL 135 313 18 ± 3.4 33 ± 2.8 1.8 (1.5, 2.3) <0.0001 1.1
<30 ng/mL 24 62 21 ± 9.5 45 ± 7.0 2.9 (1.6, 5.4) 0.0006

Ploidy Diploid 148 230 31 ± 4.0 39 ± 3.5 1.6 (1.3, 2.1) 0.0003 0.2
Hyperdiploid 119 286 32 ± 4.5 40 ± 3.1 1.4 (1.1, 1.8) 0.0137

1p aberration Present 86 57 28 ± 5.1 36 ± 7.2 1.6 (1.1, 2.5) 0.0252 0
Absent 30 185 26 ± 9.3 35 ± 3.9 1.6 (0.99, 2.6) 0.057

11q aberration Present 10 87 23 ± 18.5 34 ± 6.2 1.6 (0.7, 3.8) 0.2640 0.1
Absent 75 90 34 ± 6.0 43 ± 5.8 1.5 (1.0, 2.3) 0.0425

SCA Any 87 124 28 ± 5.1 33 ± 5.0 1.6 (1.1, 2.2) 0.0097 0.1
No 18 73 36 ± 14.4 47 ± 6.5 1.7 (0.8, 3.5) 0.1823

Histology Unfavorable 254 476 34 ± 3.2 44 ± 2.5 1.5 (1.3, 1.9) <0.0001 2.9
Favorable 4 33 25 ± 21.7 64 ± 9.1 4.4 (1.2, 16.4) 0.0288

MKI High 108 66 36 ± 4.9 50 ± 6.4 1.6 (1.1, 2.5) 0.0219 0.1
Low/intermediate 102 308 32 ± 4.9 41 ± 3.1 1.5 (1.1, 2.0) 0.0038

Grade of differentiation Undiff./poorly differentiated 236 387 34 ± 3.3 40 ± 2.7 1.4 (1.1, 1.7) 0.0042 0.1
Differentiating 2 32 50 ± 35.4 63 ± 9.3 1.3 (0.2, 10.5) 0.077

High-dose chemotherapy Yes 192 458 30 ± 3 36 ± 2 1.5 (1.2, 1.8) 0.0003 2.6
No 36 94 13 ± 6 57 ± 5 4.1 (2.6, 6.6) <0.0001

Year of diagnosis <1999 258 464 35 ± 3 44 ± 3 1.5 (1.2, 1.9) <0.0001 0.3
≥1999 185 416 21 ± 3 37 ± 2 1.8 (1.5, 2.2) <0.0001

Note. Hazard ratios reflect outcome for patients with MYCN amplified tumors (MYCN-A) relative to patients with MYCN non-amplified (MYCN-NA) tumors (reference level).

Abbreviations:; CI, confidence interval; SCA, segmental chromosome aberration; Undiff. = undifferentiated.

a

The reference level for calculation of the hazard ratios is MYCN not amplified. The HR absolute difference (HRdiff) is calculated by subtracting the HR for the prognostic factor subgroup that has the better outcome from the subgroup with the worse outcome.

Within patients with high-risk disease, we assessed the influence of treatment on the prognostic impact of MYCN-A. We observed a differential prognostic impact of MYCN-A in patients treated with (HR = 1.5 for MYCN-A vs MYCN-NA) and without (HR = 4.1 for MYCN-A vs MYCN-NA) high-dose chemotherapy (HRdiff = 2.6). Too few patients had received GD2-directed therapy for meaningful analysis (n = 50).

3.3 |. Effect modification of the prognostic impact of MYCN-A by covariates

Compared to the univariate HR for MYCN-A of 6.3, HRs for MYCN-A were lower after controlling separately for each other factor, except in the case of 11q, controlling for which increased the MYCN-A hazard ratio to 7.3 (Table 4). The covariates with the greatest attenuation of the prognostic effect of MYCN-A included LDH (MYCN-A HR = 3.1 after controlling for LDH), stage (HR = 3.2), and SCA (HR = 3.3). Similar results were seen in the Validation cohort (Table S5). Among patients with high-risk disease in the Test cohort, the HR for MYCN was already attenuated (univariate hazard ratio of 1.6) and did not vary appreciably after controlling for each other factor (Table S6).

TABLE 4.

Univariate and bivariate Cox models of overall survival for patients in the Test cohort

Univariate model n
P-value
HR (95% CI on HR)
MYCN: MYCN-A vs MYCN-NA 6223
<0.0001
6.3 (5.7, 7.0)
Bivariate models: MYCN + additional covariate Additional covariate
MYCN
n P-value HR (95% CI on HR) P-value HR (95% CI on HR)
Age (≥18 months vs <18 months) 6223 <0.0001 3.7 (3.2, 4.2) <0.0001 4.7 (4.2, 5.2)

INSS stage (stage 4 vs others) 6078 <0.0001 6.7 (5.8, 7.7) <0.0001 3.2 (2.8, 3.6)

Primary site adrenal (yes vs no) 5598 <0.0001 1.5 (1.3, 1.7) <0.0001 5.8 (5.1, 6.5)

Primary site thoracic (no vs yes) 5600 <0.0001 2.0 (1.6, 2.5) <0.0001 5.6 (5.0, 6.3)

Bone metastasis (yes vs no) 2940 <0.0001 3.4 (2.9, 3.9) <0.0001 3.4 (2.9, 3.9)

Bone marrow metastasis (yes vs no) 2939 <0.0001 4.4 (3.8, 5.2) <0.0001 3.1 (2.7, 3.6)

LDH (≥1400 U/L vs < 1400 U/L) 2990 <0.0001 3.0 (2.4, 3.7) <0.0001 3.1 (2.5, 3.8)

Ferritin (≥30 ng/mL vs < 30 ng/mL) 2966 <0.0001 2.4 (1.9, 2.9) <0.0001 5.5 (4.6, 6.5)

Ploidy (diploid vs hyperdiploid) 4162 <0.0001 1.8 (1.5, 2.0) <0.0001 5.9 (5.0, 6.8)

1p aberration (yes vs no) 1911 <0.0001 1.8 (1.3, 2.4) <0.0001 4.3 (3.2, 5.7)

11q aberration (yes vs no) 1385 <0.0001 3.0 (2.2, 3.9) <0.0001 7.3 (5.6, 9.7)

SCA (yes vs no) 1477 <0.0001 3.5 (2.6, 4.7) <0.0001 3.3 (2.5, 4.3)

Histology (unfavorable vs favorable) 4211 <0.0001 9.6 (7.7, 12.1) <0.0001 2.9 (2.5, 3.4)

MKI (high vs intermediate/low) 3133 0.0015 1.4 (1.1, 1.8) <0.0001 5.8 (4.7, 7.1)

Grade of differentiation (undifferentiating vs differentiating) 3298 <0.0001 2.9 (2.0, 4.4) <0.0001 6.0 (5.1, 7.1)

SCA, segmental chromosome aberration.

In Cox models of interaction of MYCN with a covariate, each other covariate had a significant interaction with MYCN status, with the exception of thoracic primary site (Table 5). The effects of these interactions appeared to be bidirectional, with differential prognostic impact of MYCN status depending on the covariate subgroup (as also seen in Table 2) and differential prognostic impact of the covariate depending on MYCN status. HRs for the covariates were generally attenuated in the context of MYCN-A, with some prognostic factors losing statistical significance altogether. A similar pattern was observed in the Validation cohort (Table S7).

TABLE 5.

Bivariate Cox models of overall survival including interaction terms for patients in the Test cohort

HR (95% confidence interval)
P-value
HR for death for patients with MYCN-A compared to MYCN-NA, in subgroups defined by covariate
HR for death for patients with unfavorable covariate result compared to favorable covariate result in subgroups defined by MYCN status
Additional covariate (reference group shown in parentheses and represents the more favorable subgroup) Additional covariate MYCN status Interaction term (MYCN * covariate) Covariate reference group (favorable) Covariate nonreference group (unfavorable) MYCN-A MYCN-NA
Age (< 18 months) <0.0001 <0.0001 <0.0001 22.7 (18.1, 28.4) 2.9 (2.6, 3.3) 1.1 (0.9, 1.3) 8.7 (7.2, 10.5)

INSS stage (not stage 4) <0.0001 <0.0001 <0.0001 12.9 (10.1, 16.5) 2.4 (2.1, 2.7) 2.0 (1.6, 2.5) 10.8 (9.1, 12.9)

Primary site adrenal (not adrenal) <0.0001 <0.0001   0.004 7.1 (5.9, 8.5) 5.0 (4.2, 5.8) 1.2 (1.0, 1.5) 1.7 (1.5, 2.0)

Primary site thoracic (yes thoracic) <0.0001 <0.0001   0.74 6.1 (3.5, 10.6) 5.6 (4.9, 6.3) 1.9 (1.1, 3.1) 2.1 (1.6, 2.6)

Bone metastasis (no mets) <0.0001 <0.0001 <0.0001 7.2 (5.8, 8.8) 2.0 (1.7, 2.4) 1.5 (1.2, 1.9) 5.4 (4.5, 6.5)

Bone marrow metastasis (no mets) <0.0001 <0.0001 <0.0001 8.5 (6.6, 11.1) 2.2 (1.9, 2.6) 1.8 (1.4, 2.3) 6.9 (5.7, 8.4)

LDH (<1400 U/L) <0.0001 <0.0001 <0.0001 5.4 (4.2, 7.0) 1.9 (1.5, 2.5) 1.6 (1.2, 2.1) 4.5 (3.6, 5.7)

Ferritin (<30 ng/mL) <0.0001 <0.0001 <0.0001 11.7 (8.2, 16.8) 4.6 (3.9, 5.6) 1.2 (0.9, 1.7) 3.1 (2.4, 4.0)

Ploidy (hyperdiploid) <0.0001 <0.0001 <0.0001 8.5 (6.9, 10.4) 4.2 (3.4, 5.2) 1.2 (0.9, 1.5) 2.3 (1.9, 2.8)

1p aberration (no aberration) <0.0001 <0.0001 0.0021 6.6 (4.6, 9.6) 3.0 (2.1, 4.2) 1.1 (0.8, 1.6) 2.5 (1.8, 3.4)

11q aberration (no aberration) <0.0001 <0.0001   0.0001 10.5 (7.6, 14.5) 2.2 (1.1, 4.6) 0.9 (0.4, 1.9) 4.4 (3.2, 6.2)

SCA (no SCA) <0.0001 <0.0001 <0.0001 11.3 (6.5, 19.7) 2.7 (2.0, 3.5) 1.1 (0.6, 1.9) 4.6 (3.3, 6.4)

Histology (favorable) <0.0001 <0.0001 <0.0001 16.8 (10.5, 26.8) 2.5 (2.2, 3.0) 1.9 (1.3, 3.0) 12.8 (9.9, 16.5)

MKI (intermediate/low) <0.0001 <0.0001   0.0029 7.0 (5.5, 8.8) 3.7 (2.6, 5.2) 1.1 (0.9, 1.5) 2.1 (1.5, 3.0)

Grade of neuroblastic differentiation (differentiating) <0.0001 <0.0001   0.049 14.9 (6.0, 36.8) 5.9 (5.0, 6.9) 1.4 (0.6, 3.1) 3.4 (2.2, 5.3)

Abbreviations: SCA, segmental chromosome aberration.

3.4 |. Classification trees define subgroups with differential prognostic effect of MYCN-A

In a classification tree based on HRdiff (Figure 1), age had the largest differential impact on OS given MYCN status (HRdiff = 16.6), and age subgroups formed the first branch. Within patients <18 months, the second branch was MKI (HRdiff = 61.4). Within patients ≥18 months, the second branch was grade (HRdiff = 8.6). Third and fourth branch points are further depicted in Figure 1 and revealed that patients with all of the following features had outcomes most impacted by MYCN status: <18 months, high MKI, and low ferritin (Figure S1A). In contrast, patients with all of the following features had outcomes least impacted by MYCN status: ≥18 months, undifferentiated grade, stage 4, high ferritin (Figure S1B). Application of data from patients from the Validation cohort to these same subgroups yielded similar findings (Figure S2).

FIGURE 1.

FIGURE 1

Classification tree of the Test cohort that defines subgroups with greatest differential effect of MYCN status on hazard for death. Each node has a minimum MYCN-A or MYCN-NA subgroup sample size ≥5, MYCN statistically significant for overall survival, and an absolute HR difference > 1

4 |. DISCUSSION

In this comprehensive analysis of the prognostic impact of MYCN-A, we provide a refined understanding of MYCN status as a prognostic factor in neuroblastoma. While MYCN-A remained a significant prognostic factor after controlling for other clinical and biological factors, we found the prognostic value of MYCN-A to be highly context-dependent, with specific clinical and biological factors serving to augment or diminish its prognostic impact. We were able to identify groups with survival most and least impacted by MYCN status. This work complements prior work assessing the interaction between other prognostic factors and the incidence of MYCN-A. While these previous studies show MYCN-A has differential associations with other prognostic factors,512 the current analysis provides a deeper understanding of the prognostic value of MYCN-A that may guide clinicians as they assess an individual patient’s prognosis.

The feature demonstrating the greatest absolute difference in OS relative to MYCN-A was age. The difference in the MYCN HRs for OS for patients <18 months compared to ≥18 months was 16.6, with a strong negative adverse prognostic effect of MYCN-A in young patients. This finding is supported by previous work demonstrating patients <12 months with MYCN-A have a 2-year OS of ~30%.22 Initial studies into this age-dependent MYCN-A effect, in which age was dichotomized at 12 months, hypothesized a transient differentiation period for neuroblasts.12 More recent data demonstrate a nonlinear relationship, as MYCN-A incidence peaks between 15 and 20 months of age.6 The available data from this and previous studies highlight the complex interplay between age, overall prognosis, prognostic impact of MYCN-A, and incidence of MYCN-A all taking place in this transition period between infancy and toddlerhood.

Our classification tree examined the impact of MYCN status in subgroups, identifying specific subgroups for which MYCN-A is most impactful. As MYCN-A tumors are inherently higher risk tumors, most patients with MYCN-A are subject to the intense and prolonged standard of care treatment for high-risk neuroblastoma. For a subset of patients with otherwise lower risk features, our study yields evidence of the disproportionately large negative prognostic impact of MYCN-A in this setting, reinforcing the need for MYCN testing in nearly all neuroblastoma cases. Furthermore, of those patients who relapse, MYCN-A has been identified as an independent risk factor for worse postrelapse survival,23 underscoring the need to abrogate the effects of MYCN-A upfront. As MYCN directed therapies enter clinical trials, our novel description of the relative impact of MYCN-A in specific subgroups may nominate ideal patient candidates for these trials.

All of the HRs for MYCN were attenuated in the high-risk population compared with the overall cohort, yet MYCN still remained prognostic (Table 3). These findings demonstrate that MYCN-A can still have a negative prognostic impact even among patients already deemed to be high risk. Among patients with high-risk disease, the prognostic impact of MYCN status varied depending on whether patients received high-dose chemotherapy with stem cell rescue, with a greater negative impact of MYCN-A for patients who did not receive this therapy. While we are unable to fully explain this result, we postulate two potential explanations. First, it is possible that the group of patients who did not undergo transplant may have had otherwise more favorable features, consistent with our findings that MYCN has an outsized prognostic impact in more favorable groups. Second, it is possible that the diminished impact of MYCN-A in patients treated with high-dose chemotherapy may reflect a role for increased chemotherapy dose intensity in overcoming the adverse prognostic impact of MYCN-A.

Moving forward, as newer agents intended to target Myc family proteins are developed, our results suggest potential subgroups of particular interest for these approaches. Examples of potential strategies to target MYCN and downstream dependencies include bromodomain inhibition, dual HDAC/PI3K inhibition, MDM2 inhibition, and aurora A kinase inhibition.2428 Whether patients with MYCN-A as their sole unfavorable prognostic factor will be more likely to benefit from these strategies will require further study.

Although this study was undertaken using the largest cohort available, the strength of our cohort size may be mitigated by different INRG member groups using divergent, though validated, techniques to identify MYCN status and also different treatment strategies.10,29,30 Given the size of the cohort, we were not able to centrally confirm MYCN status. We note as well that MYCN status was not missing at random, with patients missing MYCN status more likely to have unfavorable features and to be diagnosed prior to 1999 (Table 1). In completing our classification tree, given the novelty of this method, we made an a priori (but arbitrary) decision to not proceed with a branch if subgroup sample size was <5 subjects. As such, a larger sample size may have been able to provide evidence for additional splits. Our analysis does not account for different treatment approaches, including observation for some patients. However, our subanalysis focused on patients with high-risk disease mitigates this limitation as nearly all such patients would have been treated with intensive therapy.

In summary, this study represents a novel approach in demonstrating the context dependence of the prognostic impact of MYCN-A. Though it remains significant in all settings, we demonstrate the degree of impact is not uniform, but greatly dependent on the context of clinical and biological features. The differences in the degree to which MYCN-A adversely impacts prognosis can enable providers to more accurately weigh MYCN status when assessing an individual patient’s risk of treatment failure. Moreover, we have identified subgroups for which MYCN status has little impact, which may have implications in settings in which MYCN status cannot be assessed. Finally, as new agents targeting Myc family proteins mature, our results indicate specific subgroups of patients in which it would be most crucial to abrogate the effects of MYCN-A, thus identifying the best patient candidates for this class of new therapies.

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ACKNOWLEDGMENTS

The International Neuroblastoma Risk Group database is supported in part by the William Guy Forbeck Research Foundation, the Little Heroes Pediatric Cancer Research Fund, the Children’s Neuroblastoma Cancer Foundation, the Neuroblastoma Children’s Cancer Foundation, and the Super Jake Foundation. Data included in the International Neuroblastoma Risk Group database were provided by the Children’s Oncology Group, the Pediatric Oncology Group, the Children’s Cancer Study Group, the German Gesellschaft fuer Paediatrische Onkologie und Haematologie, the European Neuroblastoma Study Group, the International Society of Paediatric Oncology Europe Neuroblastoma Group, the Japanese Advanced Neuroblastoma Study Group, the Japanese Infantile Neuroblastoma Cooperative Study Group, the Spanish Neuroblastoma Group, and the Italian Neuroblastoma Group. This study was supported in part by Alex’s Lemonade Stand Foundation (KKM, SGD, and WBL), Little Heroes Pediatric Cancer Research Foundation (WBL), the Audrey Evans Endowed Chair (to Garrett M. Brodeur), and the Mildred V. Strouss Chair (to Katherine K. Matthay). Matthias Fischer reports grants from the German Ministry of Science and Education as part of the e:Med initiative (01ZX1603A and 01ZX1607D) and from Foerdergesellschaft Kinderkrebs-Neuroblastom-Forschung eV during the conduct of the study. The contents of this article are solely the responsibility of the authors and do not necessarily represent the official views of the funding sources listed here.

Funding information

Alex’s Lemonade Stand Foundation; Little Heroes Pediatric Cancer Research Foundation; Audrey Evans Endowed Chair; Mildred V. Strouss Chair; German Ministry of Science and Education, Grant Number: 01ZX1603A and 01ZX1607D; Foerdergesellschaft Kinderkrebs-Neuroblastom-Forschung eV.

Abbreviations:

HR

hazard ratio

INRG

International Neuroblastoma Risk Group

INSS

International Neuroblastoma Staging System

LDH

lactate dehydrogenase

LOH

loss of heterozygosity

MKI

mitosis karrhyohexis index

MYCN-A

MYCN amplification

OS

overall survival

SCA

segmental chromosomal aberration

Footnotes

CONFLICT OF INTEREST

The authors declare that there is no conflict of interest.

DATA AVAILABILITY

Data sharing is not applicable to this article as no new data were created or analyzed in this study.

SUPPORTING INFORMATION

Additional supporting information may be found online in the Supporting Information section at the end of the article.

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