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. 2020 Jul 10;11:3441. doi: 10.1038/s41467-020-17303-4

A diradical based on odd-electron σ-bonds

Wenbang Yang 1,#, Li Zhang 1,2,#, Dengmengfei Xiao 3,#, Rui Feng 1, Wenqing Wang 1, Sudip Pan 3, Yue Zhao 1, Lili Zhao 3,, Gernot Frenking 3,4,, Xinping Wang 1,
PMCID: PMC7351710  PMID: 32651366

Abstract

The concept of odd-electron σ–bond was first proposed by Linus Pauling. Species containing such a bond have been recognized as important intermediates encountered in many fields. A number of radicals with a one-electron or three-electron σ-bond have been isolated, however, no example of a diradical based odd-electron σ-bonds has been reported. So far all stable diradicals are based on two s/p-localized or π-delocalized unpaired electrons (radicals). Here, we report a dication diradical that is based on two Se∴Se three-electron σ–bonds. In contrast, the dication of sulfur analogue does not display diradical character but exhibits a closed-shell singlet.

Subject terms: Chemical bonding


Stable diradicals are generally based on two s/p-localized or π-delocalized unpaired electrons (radicals). Here, the authors report a dication diradical that is based on two Se∴Se three-electron σ-bonds.

Introduction

Radicals are species that possess an unpaired electron17. In general, there are two classes of stable radicals: s/p-localized and π-delocalized. In the former, the unpaired electron resides on an s/p-orbital of one atom, while in the latter, the unpaired electron is π-delocalized over two or more atoms. Apart from these two classes, there is the third class of radicals that have an unpaired electron delocalized in an σ orbital or antibonding σ* orbital between two atoms, leading to a one-electron σ-bond and a three-electron σ-bond (Fig. 1), respectively. The concept of the odd-electron σ-bond was first proposed by Pauling8, and species with these intriguing bonds have been recognized as important intermediates in chemistry and biochemistry921. A number of radicals with a one-electron2225 or three-electron σ-bond12,2632 have been isolated and structurally studied (Fig. 1).

Fig. 1. Schematic representation of odd-electron σ-bonds and selected examples.

Fig. 1

a The B·B one-electron σ–bond proved by EPR. b The B·B one-electron σ–bond proved by X-ray diffraction. c The P·P one-electron σ–bond. d The Cu·B heteronuclear one-electron σ–bond. e The Xe·Xe one-electron σ–bond. f The N∴N three-electron σ–bond. g The S∴S and Se∴Se three-electron σ–bonds. h The Pd∴Pd and Ni∴Ni three-electron σ–bonds. i The Rh∴Si and Ir∴Si heteronuclear three-electron σ–bonds.

Diradicals are species with two unpaired electrons (radicals), which are of importance both in understanding of bonding nature and application as functional materials3337. So far all stable diradicals are based on two s/p-localized or π-delocalized unpaired electrons (radicals); however, no example of a diradical based odd-electron σ-bonds has been reported. In 2014, we isolated selenium and sulfur radical cations (NapSe2Ph2)+ and (NapS2Ph2)+ (highlighted in Fig. 1)29,30 that feature a Se∴Se and S∴S three-electron σ-bond, respectively.

We now report a diradical (22+, Fig. 2) that is based on two Se∴Se three-electron σ-bonds. In contrast, the dication of sulfur analog (12+) does not display diradical character but exists as a closed-shell singlet instead.

Fig. 2. Preparation, cyclic voltammograms, and two-electron oxidation of tetrachalcogenides 1 and 2.

Fig. 2

a Preperation of compounds 1 and 2. b The cyclic voltammetry of 1. c Two-electron oxidation of 1. d The cyclic voltammetry of 2. e Two-electron oxidation of 2.

Results

Syntheses of dications

Tetrachalcogenides 1 and 2 were synthesized in two steps from 1,4,5,8-tetrabromo naphthalene38 and nBuLi with corresponding diphenyl dichalcogenide at −78 °C, respectively (Fig. 2). Their cyclic voltammetry (CV) in CH2Cl2 at room temperature with supporting electrolyte nBu4NPF6 displays two reversible oxidation peaks at oxidation potentials of +0.84, 1.07 V (1) and +0.74, 1.04 V (2) (Fig. 2). Prompted by CV data, 1 and 2 were treated with two equivalents of Li[Al(ORF)4] (ORF = OC(CF3)3)39 and NOSbF6 in CH2Cl2 to afford dications 12+ and 22+ in modest yields, respectively (Fig. 2). These dications are air sensitive but thermally stable under nitrogen or argon atmosphere. They were characterized by chemical analysis, UV absorption spectroscopy, EPR spectroscopy, single-crystal X-ray diffraction, and superconducting quantum interference device (SQUID) measurements.

Crystal structures

Crystals suitable for X-ray crystallographic studies were obtained by cooling solutions of neutral tetrachalcogenides and their oxidized species. Their crystal structures are shown in Fig. 3. Some structural parameters are listed in Table 1. In the molecular geometries of 1 and 2, one Ch–CPh (Ch = S, Se) bond is nearly perpendicular to the other at both sides of the naphthalene skeleton. Upon oxidation, in 12+ the two S–CPh bonds at the same side of the naphthalene skeleton are nearly linear (torsion angle ∠CPhSSCPh = 6°) and all four S–CPh bonds are coplanar to the naphthalene skeleton, while in 22+ two Se–CPh bonds at the same side are parallel and all Se–CPh bonds are nearly perpendicular to the naphthyl plane (∠CSeC = 100°). The average Se–C bond (Se–CPh and Se–CNap) lengths in 22+ are slightly shorter while ∠C–Se–C angles are slightly larger than those in neutral 2. The Se•••Se separation (2.905(1) Å) is shorter than that (3.054(2) Å) in 2, but longer than the Se–Se single bond length (ca. 2.34 Å)40. The Se–CPh bond alignment and structural parameters of 22+ are similar to those of (NapSe2Ph2)+30, indicating there is a three-electron σ-bond between two Se atoms, and the whole dication possesses two three-electron σ-bonds. In contrast, though the S•••S separation (2.774(2) Å) is also shorter than that (2.937(2) Å) in 1, it is much longer than a regular S–S single bond (ca. 2.05 Å) and comparable to those of molecules with weak intramolecular S•••S interactions41. The S–Cnap bond length (1.727(4) Å) of 12+ is also notably shorter than those of 1 (1.792(2) Å) and (NapS2Ph2)+ (1.768(3) Å)30. Moreover, the naphthalene skeleton of 12+ becomes quinoidal (C8–C9 1.351(6) Å).

Fig. 3. 50% ellipsoid drawings of 1, 12+, 2, and 22+.

Fig. 3

Yellow, carbon; red, selenium; blue, sulfur. Hydrogen atoms are not shown. Selected bond length (Å) and angle (deg): 1 S1S2′ 2.937(2), S1–C1 1.788(3), S1–C7 1.797(2), C7–C8 1.375(3), C8–C9 1.404(3), C9–C10 1.365(4), C10–C11 1.438(3), C11–C11′ 1.473(4), S2–C10 1.787(2), S2–C12 1.787(3), C1–S1–C7 102.3(1), C1–S1–S2′ 163.3(7), C10–S2–C12 102.4(1), C12–S2–S1′ 83.2(7); 12+ S1–S2′ 2.774(2), S1–C1 1.769(4), S1–C7 1.735(4), C7–C8 1.412(6), C8–C9 1.351(6), C9–C10 1.418(6), C10–C11 1.426(6), C11–C11′ 1.467(7), S2–C10 1.720(4), S2–C12 1.763(5), C1–S1–C7 105.0(2), C1–S1–S2′ 164.5(2), C10–S2–C12 105.3(2), C12–S2–S1′ 161.8(2); 2 Se1Se4 3.061(5), Se2Se3 3.048(5), Se1–C1 1.917(10), Se1–C7 1.931(9), C7–C8 1.349(13), C8–C9 1.388(13), C9–C10 1.338(12), C10–C11 1.439(12), C11–C28 1.460(10), C7–C28 1.436(12), Se2–C10 1.959(8), Se2–C12 1.934(9), C1–Se1–C7 99.4(4), C1–Se1–Se4 124.4(6), C10–Se2–C12 98.2(4), C12–Se2–Se3 175.9(2); 22+ Se1–Se2′ 2.905(1), Se1–C1 1.901(5), Se1–C7 1.920(5), C7–C8 1.362(7), C8–C9 1.397(7), C9–C10 1.359(7), C10–C11 1.421(6), C11–C11′ 1.457(8), Se2–C10 1.924(5), Se2–C12 1.908(5), C1–Se1–C7 101.2(2), C1–Se1–Se2′ 102.0(1), C10–Se2–C12 99.2(2), C10–Se2–Se1′ 95.7(1).

Table 1.

Comparison of structural parameters (average) of neutral and dications.

graphic file with name 41467_2020_17303_Figa_HTML.gif
1 (X-ray) 1 (DFT) 12+ (X-ray) 12+-cs (DFT) 32+-cs (DFT)
SS, Å 2.937(2) 3.025 2.774(2) 2.859 2.868
S–CPh, Å 1.787(3) 1.799 1.766(4) 1.787 1.796
S–CNap, Å 1.792(2) 1.801 1.727(4) 1.750 1.754
∠C–S–C, deg 102.3(1) 103.1 105.2(2) 105.8 105.9
∠S–S–CPh, deg 163.3(1) 83.2(1) 173.7 94.0 163.1(2) 149.6 169.2
2 (X-ray) 2 (DFT) 22+ (X-ray) 22+-os (DFT)
SeSe, Å 3.054(5) 3.103 2.905(1) 2.971 2.928
Se–CPh, Å 1.935(8) 1.946 1.910(7) 1.914 1.916
Se–CNap, Å 1.945(9) 1.94 1.917(6) 1.936 1.890
∠C–Se–C, deg 98.6(3) 97.8 100.2(1) 101.9 101.8
∠Se–Se–CPh, deg 118.1(3) 113.2 98.8(1) 105.9 138.2
176.9(3) 168.6

Spectroscopic characterization and SQUID measurements

These dications were further characterized by UV absorption spectroscopy, EPR spectroscopy, and SQUID measurements. The UV–Vis absorption spectra of 12+•2[Al(ORF)4] and 22+•2[Al(ORF)4] solutions show characteristic absorptions at 710 and 610 nm, respectively, (Supplementary Figs. 2 and 4).

The EPR spectrum (Fig. 4a) of the frozen solution of 22+•2[Al(ORF)4] appears typical of a triplet state with the zero-field parameters D (136.0 G), E (53.0 G) and an anisotropic g factor (gx = 2.0190, gy = 2.0250, and gz = 2.0020) determined by spectral simulation. The giso value (2.0153) is slightly smaller than that of (NapSe2Ph2)•+ (2.0236)29. The average spin–spin distance was estimated to be 5.9 Å from the D parameter, which is comparable to the distance (6.6 Å) between the middle points of SeSe bonds in the X-ray structure. The forbidden Δms = ±2 transition was not observed from the frozen solution due to the low spin concentration, but observed at the half region of the EPR spectrum on the powder sample of 22+•2[Al(ORF)4] (Fig. 4b), indicating that 22+ is a diradical dication. An increasing susceptibility with temperature was observed for the powder sample of 22+ (Fig. 4c). Careful fitting with Bleaney–Bowers equation42 gave a singlet–triplet energy gap (ΔES–T = −0.29 kcal mol−1), confirming that 22+ has an open-shell singlet (OS) ground state. To exclude the intermolecular electronic interaction, frozen solution variable-temperature EPR spectroscopy was performed (Supplementary Fig. 5). AT is the product of the intensity for the Δms = 2 resonance and the temperature (T)43.

Fig. 4. EPR spectra and temperature-dependent plots of χMT for the crystals of 22+.

Fig. 4

a The EPR spectrum of frozen solution of 22+ (1 × 10−4 mol/l) at 183 K (in black) with simulation (in red). b The EPR spectrum of the powder sample of 22+ at 183 K with the forbidden transition at the half magnetic field. c Temperature-dependent plots of χMT for the crystals of 22+ from 2 to 320 K (in black) with the fitting plot via the Bleaney–Bowers equation (in red). d Temperature-dependent plots of χMT for the crystals of 12+ from 2 to 320 K.

The plot of ln(AT) versus 1/T gives the singlet–triplet gap ΔES–T of −0.14 kcal mol−1, which is close to that obtained from SQUID measurement, further confirming the intra-antiferromagnetic interaction. In contrast, both the frozen solution and powder samples of 12+ are EPR silent, which together with the diamagnetism observed by SQUID measurement (Fig. 4d) indicates 12+ has a closed-shell structure in the ground state.

Theoretical calculations

To explore their electronic structures, we performed density functional theory (DFT) calculations on neutral molecules and dications. We first used the crystal structure of 22+ and 12+ as the starting geometries for optimization of their close-shell singlets (CS), open-shell singlets (OS), and triplets at the (U)B3LYP/6-31+G(d,p) level. 22+ has an OS ground state (22+-os) while 12+ has a closed-shell singlet ground state (12+-cs) (Supplementary Table 2). The closed-shell state of 22+ (22+-cs) has a similar geometry to that of 12+-cs. However, a geometry optimization starting with 22+-cs does not reach 22+-os, probably due to a high energy barrier. The optimized geometries of these dications with the lowest energy reasonably agree with the X-ray crystal structures (Table 1). A hypothetical mixed dication species 32+ with two S atoms and two Se atoms at each side of the naphthalene skeleton was also computed (Table 1), which has a closed-shell singlet ground state with the geometry similar to that of 12+. However, the energy difference between the closed-shell singlet and the triplet is lower than that of 12+ but higher than that of 22+, showing the atom dependence (Supplementary Table 2).

Consistent with the experimental data, all four S–Cph bonds in 12+-cs are nearly coplanar with the naphthalene skeleton, leading to a quinoidal geometry reflected by the HOMO (Fig. 5a). The decrease of the S•••S separation from 1 to 12+ indicates considerable intramolecular S•••S interaction40, which is supported by Wiberg bond order of S–S bond (0.19). In 22+-os, the spin density is mainly on Se atoms with an additional extension to the four phenyl rings and naphthalene skeleton (Fig. 5b). The calculated Wiberg bond order for two Se–Se bonds (0.43, 0.43), together with calculated Se–Se antibonding and bonding orbitals (Fig. 5b), indicates the formation of a 2c–3e hemi bond between Se atoms at both sides of the naphthalene skeleton. The calculated miniscule singlet–triplet energy gap (−0.20 kcal mol−1) is in agreement with the value determined from SQUID measurement. Figure 6 shows the Laplacian distribution ∇2ρ(r), the bond paths and critical points of 12+ and 22+ in a plane that contains Ch (Ch = S, Se) atoms and the naphthalene skeleton. It clearly shows the S–S and Se–Se bonding character, as indicted by the bond critical point between the Ch–Ch centers. Judging from the time-dependent DFT (TD-DFT) calculations (Supplementary Figs. 2 and 4), the UV absorptions are mainly assigned to HOMO→LUMO (for 12+) and HOMO-1 (α/β)→LUMO (α/β) (for 22+), respectively, (Fig. 5).

Fig. 5. Molecular orbitals and spin density distribution.

Fig. 5

a Frontier molecular orbitals of 12+. b The spin density distribution and some molecular orbitals of 22+.

Fig. 6. Plots of the Laplacian ∇2ρ(r) and resonance structures.

Fig. 6

Plots of the Laplacian ∇2ρ(r) for 12+ (a) and 22+ (b). Red dashed lines indicate areas of charge concentration (∇2ρ(r) < 0), while solid blue lines show areas of charge depletion (∇2ρ(r) > 0). The solid lines connecting the atomic nuclei are the bond paths. Green dots are bond critical points and red dots are ring critical points. c Resonance structures of 12+.

Since it is a complicated system to perform complete-active-space SCF (CASSCF) calculation that will take a large active space, we performed a CAS(2,4) calculation with B3LYP optimized geometry to check whether we can call confidently that 22+ possesses an OS state. The resulting Löwdin natural orbitals (NOs) derived from the CASSCF density matrix and their occupation is given in Supplementary Fig. 6. The corresponding occupation number and the shape of the NOs corroborate with the DFT finding.

Discussion

We, here, have shown that tetrachalcogenides 1 and 2 with a naphthalene bridge underwent two-electron oxidations, which afforded room temperature stable dications 12+ and 22+. 12+ is shown to possess a closed-shell singlet ground state while 22+ is a diradical containing two Se∴Se three-electron σ-bonds with the electronic coupling of −0.29 kcal mol−1. The difference of electronic structures between two dications 12+ and 22+ is attributed to the easier pπ–pπ interaction between sulfur and carbon atoms than that between selenium and carbon atoms in terms of atomic size matching. The experimentally obtained geometry of 12+ may be rationalized by that two sulfur atoms from each side of the molecule loses one electron and form a quinoidal structure (I and II, Fig. 6c) with a 14c–16e π-bond upon two-electron oxidation. Though the S•••S separation was observed from 1 to 12+ decreases, the S–S bond length in 12+ (2.77 Å) is much longer than a typical S–S single bond (2.05 Å)41. Thus the geometry of 12+ is best described as the hybrid of resonance structures of I and II, which is supported by the calculated HOMO (Fig. 5a). In contrast, the difficult formation of pπ–pπ bonding between selenium and carbon atoms makes dication 22+ as a diradical containing two Se∴Se three-electron σ-bonds. 22+ represents the first example of a diradical based on odd-electron σ-bonds. The hypothetical mixed singlet species 32+ has a similar quinoidal geometry as 12+, which may also be induced by sulfur and carbon pπ–pπ interaction. The work sheds new light on the concepts of both diradicals and odd-electron bonds. Synthesis of more diradicals based on odd-electron bonds is under way in our laboratory.

Methods

General

All manipulations were carried out under an N2 atmosphere by using standard Schlenk or glove box techniques. Solvents were dried prior to use. 1,4,5,8-tetrabromo naphthalene38 and Li[Al(ORF)4] (ORF = OC(CF3)3)39 were synthesized according to the literature procedures. NOSbF6, diphenyldisulfane (PhSSPh), diphenyldiselane (PhSeSePh), isochromeno[6,5,4-def]isochromene-1,3,6,8-tetraone, and nBuLi (1.60 M, in hexane) were purchased from Energy Chemical. CV was performed on an IM6ex electrochemical workstation, with platinum as the working and counter electrodes, Ag/Ag+ as the reference electrode and 0.2 M nBu4NPF6 as the supporting electrolyte. The NMR spectra were performed using a Bruker DRX-400 at room temperature in ppm downfield from internal Me4Si. EPR spectra were obtained using Bruker EMX-10/12 X-band variable-temperature apparatus. UV–Vis spectra were recorded on the Lambda 750 spectrometer. Element analyses of 12+•2[Al(ORF)4] and 22+•2[Al(ORF)4] were performed at Shanghai Institute of Organic Chemistry, the Chinese Academy of Sciences. Magnetic measurements were performed using a Quantum Design SQUID VSM magnetometer with a field of 0.1 T. X-ray crystal structures were obtained by using Bruker D8 CMOS detector at 193 K. Crystal data and structure refinement are listed in Supplementary Table 1.

Preparation of (4,8-dibromonaphthalene-1,5-diyl)bis(phenylsulfane): A solution of nBuLi (6.90 ml, 1.60 M, 11.04 mmol) in hexane was added dropwise to a solution of 1,4,5,8-tetrabromo naphthalene (2.24 g, 5.05 mmol) in Et2O (150 ml) at −78 °C and stirring was maintained for 2 h. Then a solution of PhSSPh (2.40 g, 11.00 mmol) in Et2O (20 ml) was added dropwise to the mixture. Then the resulting mixture was allowed to reach to room temperature and stirring was continued for 12 h. The crude product was treated with 0.10 M solution of sodium hydroxide (3 × 30 ml) and extracted with Et2O. The combined organic phase was dried over Na2SO4 and concentrated under vacuum. The crude product was purified by chromatography using petroleum ether: CH2Cl2 (10: 1) as the eluent to give 1.00 g of (4,8-dibromonaphthalene-1,5-diyl)bis(phenylsulfane) (40%) as light yellow solid. 1H NMR(400 MHz, CD2Cl2) δ 7.14 (d, 3J(H, H) = 8.1 Hz, 2H, Ar-H), 7.26–7.32 (m, 10 H, Ar-H) 7.60 (d, 3J(H, H) = 8.1 Hz, 2H, Ar-H); 13C NMR(125 MHz, CD2Cl2) δ 118.21, 128.24, 129.96, 132.89, 134.32, 134.35, 134.62, 137.09, and 137.36.

Preparation of (4,8-dibromonaphthalene-1,5-diyl)bis(phenylselane): By the procedure similar to the synthesis of the (4,8-dibromonaphthalene-1,5-diyl)bis(phenylsulfane), a yellow solid is given. Yield: 1.01 g, 34.5%; 1H NMR (400 MHz, CD2Cl2) δ 7.10 (d, 3J(H, H) = 8.16 Hz, 2H, Ar-H), 7.35–7.41 (m, 6H, Ar-H) 7.48 (d, 3J(H, H) = 8.15 Hz, 2H, Ar-H), 7.56–7.58 (m, 4H, Ar-H); 13C NMR(125 MHz, CD2Cl2) δ 118.75, 129.32, 130.27, 132.34, 133.30, 133.52, 135.13, 135.72, and 136.59.

Preparation of 1: A solution of nBuLi (2.60 ml, 1.60 M, 4.16 mmol) in hexane was added dropwise to a solution of (4,8-dibromonaphthalene-1,5-diyl)bis(phenylsulfane) (1.00 g, 1.99 mmol) in Et2O (120 ml) at −78 °C and maintained stirring for 2 h. Then a solution of PhSSPh (0.92 g, 4.21 mmol) in Et2O (20 ml) was added dropwise to the mixture. Then the resulting mixture was raised to room temperature and kept stirring for 12 h. The crude product was treated with 0.10 M solution of sodium hydroxide (3 × 30 ml) and extracted with Et2O. The combined organic phase was dried over Na2SO4 and concentrated under vacuum. The crude product was purified by chromatography using petroleum ether: CH2Cl2 (5: 1) as the eluent to give 0.45 g (0.80 mmol) of 1 (40%) as a dark yellow solid. 1H NMR (400 MHz, CD2Cl2) δ 7.17–7.18 (m, 2H, Ar-H), 7.20 (d, 3J(H, H) = 1.7 Hz, 4H, Ar-H), 7.21–7.23 (m, 2H, Ar-H), 7.24–7.25 (m, 2H, Ar-H), 7.26–7.28 (m, 8H, Ar-H), 7.29–7.30 (m, 6H, Ar-H); 13C NMR (125 MHz, CD2Cl2) δ 127.49, 129.65, 131.31, 133.68, 135.07, 136.37, and 138.57.

Preparation of 2: By the procedure similar to the synthesis of 1, a yellow solid is given. Yield: 0.46 g, 30%; 1H NMR (400 MHz, CD2Cl2) δ 7.24–7.25 (m, 2H, Ar-H), 7.26–7.27 (m, 4H, Ar-H), 7.28–7.30 (m, 6H, Ar-H), 7.35–7.36 (m, 4H, Ar-H), 7.37–7.38 (m, 4H, Ar-H), 7.48 (d, 3J(H, H) = 1.05 Hz, 4H, Ar-H); 13C NMR (125 MHz, CD2Cl2) δ 127.96, 129.77, 132.73, 133.31, 135.69, 135.95, and 138.64.

Preparation of 12+•2[Al(ORF)4]: Under anaerobic and anhydrous conditions, CH2Cl2 (35 ml) was added dropwise to the mixture of 1 (0.11 g, 0.20 mmol), NOSbF6 (0.11 g, 0.42 mmol) and Li[Al(ORF)4] (0.41 g, 0.42 mmol) while stirring at room temperature. The resultant dark blue solution was stirred at room temperature for 12 h, and then filtered to remove the precipitate (LiSbF6). The filtrate was concentrated and stored at −40 °C for 24 h to afford yellow X-ray-quality crystals of 12+•2[Al(ORF)4]. Isolated yield: 0.12 g, 24%; elemental analysis (calcd. found for C66H24Al2F72O8S4): C (31.77, 31.48) H (0.97, H 1.14).

Preparation of 22+•2[Al(ORF)4]: By the procedure similar to the synthesis of 12+•2[Al(ORF)4], black crystals are given. Isolated yield: 0.10 g, 19%; elemental analysis (calcd found for C66H24Al2F72O8Se4): C (29.55, 29.16) H (0.90, H 1.13)

Quantum chemical calculations

Geometry optimization without symmetry constraint were performed using DFT at the (U)B3LYP/6-31+G(d, p) level. Frequency results were examined to confirm stationary points as minima (no imaginary frequencies). The UV–Vis absorption spectrum was calculated on the optimized geometry using TD-DFT method at the (U)B3LYP/6-31+G(d,p) level. To consider solvent (CH2Cl2) effects, polarized continuum model was adopted in the calculation of the single point energies involved in the disproportionation and dimerization, and UV–Vis absorption spectrum. Wiberg bond order was calculated at the (U)B3LYP/6-31+G(d,p) level with the Multiwfn program. These calculations were performed using Gaussian 16 A03 software. The electron density distribution was analyzed with Quantum Theory of Atom in Molecules method that was developed by Bader44. The multiconfigurational CASSCF45,46 calculations were performed on the (U)B3LYP/6-31+G(d, p) optimized geometry of 22+-os with the def2-SVP basis set using ORCA 4.2.0 program47.

Supplementary information

Acknowledgements

We thank the National Key R&D Program of China (Grants 2016YFA0300404 and 2018YFA0306004, X.W.), the National Natural Science Foundation of China (Grants 21525102 and 21690062, X.W.; 21703099 and 21993044, Lil.Z. and G.F.), Natural Science Foundation of Jiangsu Province for Youth (Grant BK20170964, Lil.Z. and G.F.), Nanjing Tech University (Grants 39837132 and 39837123, Lil.Z. and G.F.) and SICAM Fellowship from Jiangsu National Synergetic Innovation Center for Advanced Materials (Lil.Z.) for the financial support. We are grateful to the high performance center of Nanjing Tech University and the High Performance Computing Centre of Nanjing University for providing the IBM Blade cluster system for supporting the computational resources. Part of the computational work has been done on the Sugon TC5000 high performance Linux cluster at ITCC.

Author contributions

X.W. conceived the project. W.Y. performed the chemical experiments and recorded all spectroscopic data. R.F. and Y.Z. performed the X-ray diffraction studies. L.Z., D.X., and S.P. carried out the calculations. G.F. and Lil.Z. analyzed the computational data and wrote the theoretical part. X.W. wrote the paper. W.W. helped with writing of the experimental section. All authors discussed the results and manuscript.

Data availability

The authors declare that all relevant data supporting the findings of this work are available from the corresponding authors on request. The X-ray crystallographic coordinates for structures reported in this study have been deposited at the Cambridge Crystallographic Data Centre (CCDC), under deposition numbers 1959358-1959361. These data can be obtained free of charge from The Cambridge Crystallographic Data Centre via www.ccdc.cam.ac.uk/data_request/cif.

Competing interests

The authors declare no competing interests.

Footnotes

Peer review information Nature Communications thanks the anonymous reviewer(s) for their contribution to the peer review of this work.

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

These authors contributed equally: Wenbang Yang, Li Zhang, Dengmengfei Xiao.

Contributor Information

Lili Zhao, Email: ias_llzhao@njtech.edu.cn.

Gernot Frenking, Email: frenking@chemie.uni-marburg.de.

Xinping Wang, Email: xpwang@nju.edu.cn.

Supplementary information

Supplementary information is available for this paper at 10.1038/s41467-020-17303-4.

References

  • 1.Griller D, Ingold KU. Persistent carbon-centered radicals. Acc. Chem. Res. 1976;9:13–19. [Google Scholar]
  • 2.Schmittel M, Burghart A. Understanding reactivity patterns of radical cations. Angew. Chem. Int. Ed. 1997;36:2550–2589. [Google Scholar]
  • 3.Power PP. Persistent and stable radicals of the heavier main group elements. Chem. Rev. 2003;103:789–809. doi: 10.1021/cr020406p. [DOI] [PubMed] [Google Scholar]
  • 4.Chivers, T. & Konu, J. Stable radicals of the heavier p-block elements. in Comprehensive Inorganic Chemistry II: from Elements to Applications, Volume 1: Main-group Elements, Including Noble Gases (ed. Chivers, T.) 349–373 (Elsevier, 2013).
  • 5.Zard, S. Z. Radical Reactions in Organic Synthesis (Oxford University, 2003).
  • 6.Hicks, R. G. Stable Radicals, Fundamentals and Applied Aspects of Odd-electron Compounds (Wiley, 2010).
  • 7.Martin CD, Soleilhavoup M, Bertrand G. Carbene-stabilized main group radicals and radical ions. Chem. Sci. 2013;4:3020–3030. doi: 10.1039/C3SC51174J. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.Pauling L. The nature of the chemical bond. II. The one-electron bond and the three-electron bond. J. Am. Chem. Soc. 1931;53:3225–3237. [Google Scholar]
  • 9.Baird NC. The three-electron bond. J. Chem. Edu. 1977;54:291–293. [Google Scholar]
  • 10.Asmus K. Stabilization of oxidized sulfur centers in organic sulfides. Radical cations and odd-electron sulfur-sulfur bonds. Acc. Chem. Res. 1979;12:436–442. [Google Scholar]
  • 11.Grützmacher H, Breher F. Odd-electron bonds and biradicals in main group element chemistry. Angew. Chem. Int. Ed. 2002;41:4006–4011. doi: 10.1002/1521-3773(20021104)41:21<4006::AID-ANIE4006>3.0.CO;2-I. [DOI] [PubMed] [Google Scholar]
  • 12.Berry JF. Two-center/three-electron sigma half-bonds in main-group and transition metal chemistry. Acc. Chem. Res. 2016;49:27–34. doi: 10.1021/acs.accounts.5b00517. [DOI] [PubMed] [Google Scholar]
  • 13.Glass RS, et al. Neighboring amide participation in thioether oxidation: relevance to biological oxidation. J. Am. Chem. Soc. 2009;131:13791–13805. doi: 10.1021/ja904895u. [DOI] [PubMed] [Google Scholar]
  • 14.Majjigapu K, Majjigapu JRR, Kutateladze AG. Photoamplification and multiple tag release in a linear peptide–based array of dithiane adducts. Angew. Chem. Int. Ed. 2007;46:6137–6140. doi: 10.1002/anie.200701512. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Nauser, T., Jacoby, M., Koppenol, W. H., Squier, T. C. & Schöneich, C. Calmodulin methionine residues are targets for one-electron oxidation by hydroxyl radicals: formation of S∴N three-electron bonded radical complexes. Chem. Commun. 5, 587–589 (2005). [DOI] [PubMed]
  • 16.Schöneich C, Pogocki D, Hug GL, Bobrowski K. Free radical reactions of methionine in peptides: mechanisms relevant to β-amyloid oxidation and alzheimer’s disease. J. Am. Chem. Soc. 2003;125:13700–13713. doi: 10.1021/ja036733b. [DOI] [PubMed] [Google Scholar]
  • 17.Bonifacic M, Hug GL, Schöneich C. Kinetics of the reactions between sulfide radical cation complexes, [S∴S]+ and [S∴N]+, and superoxide or carbon dioxide radical anions. J. Phys. Chem. A. 2000;104:1240–1245. [Google Scholar]
  • 18.Miller BL, Kuczera K, Schöneich C. One-electron photooxidation of N-methionyl peptides. Mechanism of sulfoxide and azasulfonium diastereomer formation through reaction of sulfide radical cation complexes with oxygen or superoxide. J. Am. Chem. Soc. 1998;120:3345–3356. [Google Scholar]
  • 19.Goez M, Rozwadowski J, Marciniak B. CIDNP spectroscopic observation of (S:.N)+ radical cations with a two–center three–electron bond during the photooxidation of methionine. Angew. Chem. Int. Ed. 1998;37:628–630. doi: 10.1002/(SICI)1521-3773(19980316)37:5<628::AID-ANIE628>3.0.CO;2-T. [DOI] [PubMed] [Google Scholar]
  • 20.Schöneich C, Zhao F, Madden KP, Bobrowski K. Side chain fragmentation of N-terminal threonine or serine residue induced through intramolecular proton transfer to hydroxy sulfuranyl radical formed at neighboring methionine in dipeptides. J. Am. Chem. Soc. 1994;116:4641–4652. [Google Scholar]
  • 21.Steffen LK, et al. Hydroxyl radical induced decarboxylation of amino acids. Decarboxylation vs bond formation in radical intermediates. J. Am. Chem. Soc. 1991;113:2141–2145. [Google Scholar]
  • 22.Hofelmeyer JD, Gabbai FP. An intramolecular boron–boron one-electron σ-bond. J. Am. Chem. Soc. 2000;122:9054–9055. [Google Scholar]
  • 23.Hübner A, et al. Confirmed by X-ray crystallography: the B·B one-electron’s bond. Angew. Chem. Int. Ed. 2014;53:4832–4835. doi: 10.1002/anie.201402158. [DOI] [PubMed] [Google Scholar]
  • 24.Cataldo L, et al. Formation of a phosphorus-phosphorus bond by successive one-electron reductions of a two-phosphinines-containing macrocycle: crystal structures, EPR, and DFT investigations. J. Am. Chem. Soc. 2001;123:6654–6661. doi: 10.1021/ja010331r. [DOI] [PubMed] [Google Scholar]
  • 25.Moret M, Zhang L, Peters JC. A polar copper-boron one-electron σ-bond. J. Am. Chem. Soc. 2013;135:3792–3795. doi: 10.1021/ja4006578. [DOI] [PubMed] [Google Scholar]
  • 26.Drews T, Seppelt K. The Xe2+ ion-preparation and structure. Angew. Chem. Int. Ed. 1997;36:273–274. [Google Scholar]
  • 27.Gerson F, Knöbel J, Buser U, Vogel E, Zehnder M. A N-N three-electron σ–bond. Structure of the radical cation N, N’-trimethylene-syn-1, 6:8, 13-diimino[14]annulene as studied by ESR spectroscopy and X-ray crystallographic analysis. J. Am. Chem. Soc. 1986;108:3781–3783. [Google Scholar]
  • 28.Alder, R. W., Orpen, A. G. & White, J. M. Structures of the radical cation and dication from oxidation of 1,6-diazabicyclo[4.4.4]tetradecane. J. Chem. Soc. Chem. Commun. 14, 949–951 (1985).
  • 29.Zhang S, et al. Isolation and reversible dimerization of a selenium–selenium three-electron σ-bond. Nat. Commun. 2014;5:4127. doi: 10.1038/ncomms5127. [DOI] [PubMed] [Google Scholar]
  • 30.Zhang S, Wang X, Sui Y, Wang X. Odd-electron-bonded sulfur radical cations: X-ray structural evidence of a sulfur–sulfur three-electron σ-bond. J. Am. Chem. Soc. 2014;136:14666–14669. doi: 10.1021/ja507918c. [DOI] [PubMed] [Google Scholar]
  • 31.Zheng X, et al. Access to stable metalloradical cations with unsupported and isomeric metal–metal hemi–bonds. Angew. Chem. Int. Ed. 2015;54:9084–9087. doi: 10.1002/anie.201503392. [DOI] [PubMed] [Google Scholar]
  • 32.Nance PJ, Thompson NB, Oyala PH, Peters JC. Zerovalent Rh and Ir silatranes featuring 2–center, 3–electron polar sigma bonds. Angew. Chem. Int. Ed. 2019;58:6220–6224. doi: 10.1002/anie.201814206. [DOI] [PubMed] [Google Scholar]
  • 33.Salem L, Rowland C. Electronic properties of diradicals. Angew. Chem. Int. Ed. 1972;11:92–111. [Google Scholar]
  • 34.Abe M. Diradiclas. Chem. Rev. 2013;113:7011–7088. doi: 10.1021/cr400056a. [DOI] [PubMed] [Google Scholar]
  • 35.Abe M, Ye J, Mishima M. The chemistry of localized singlet 1,3-diradicals (biradicals): from putative intermediates to persistent species and unusual molecules with a pi-single bonded character. Chem. Soc. Rev. 2012;41:3808–3820. doi: 10.1039/c2cs00005a. [DOI] [PubMed] [Google Scholar]
  • 36.Zeng Z, et al. Pro-aromatic and anti-aromatic π-conjugated molecules: an irresistible wish to be diradicals. Chem. Soc. Rev. 2015;44:6578–6596. doi: 10.1039/c5cs00051c. [DOI] [PubMed] [Google Scholar]
  • 37.Sun Z, Ye Q, Chi C, Wu J. Low band gap polycyclic hydrocarbons: from closed-shell near infrared dyes and semiconductors to open-shell radicals. Chem. Soc. Rev. 2012;41:7857–7879. doi: 10.1039/c2cs35211g. [DOI] [PubMed] [Google Scholar]
  • 38.Zhang H, et al. On-surface synthesis of rylene-type graphene nanoribbons, J. Am. Chem. Soc. 2015;137:4022–4025. doi: 10.1021/ja511995r. [DOI] [PubMed] [Google Scholar]
  • 39.Krossing I. The facile preparation of weakly coordinating anions: structure and characterisation of silverpolyfluoroalkoxyaluminates AgAl(ORF)4, calculation of the alkoxide ion affinity. Chem. Eur. J. 2001;7:490–502. doi: 10.1002/1521-3765(20010119)7:2<490::aid-chem490>3.0.co;2-i. [DOI] [PubMed] [Google Scholar]
  • 40.Iwasaki F, Morimoto M, Yasui M. Structure of 1,5-diselenoniabicyclo[3.3.0]octane bis(tetrafluoroborate) acetonitrile solvate. Acta Cryst. C. 1991;47:1463–1466. [Google Scholar]
  • 41.Rolf G, Gebhard H. Electron-rich two-, three- and four-center bonds between chalcogens – new prospects for old molecules. Coord. Chem. Rev. 2017;344:263–298. [Google Scholar]
  • 42.Bleaney BK, Bowers D. Anomalous paramagnetism of copper acetate. Proc. R. Soc. Lond., Ser. A. 1952;214:451–465. [Google Scholar]
  • 43.Kostenko A, et al. Observation of a thermally accessible triplet state resulting from rotation around a main-group π bond. Angew. Chem. Int. Ed. 2015;54:12144–12148. doi: 10.1002/anie.201506291. [DOI] [PubMed] [Google Scholar]
  • 44.Bader, R. F. Atoms in Molecules. A Quantum Theory (University Press, Oxford, 1990).
  • 45.Hegarty D, Robb MA. Application of unitary group-methods to configuration-interaction calculations. Mol. Phys. 1979;38:795–812. [Google Scholar]
  • 46.Yamamoto N, Vreven T, Robb MA, Frisch MJ, Schlegel HB. A direct derivative MC-SCF procedure. Chem. Phys. Lett. 1996;250:373–378. [Google Scholar]
  • 47.Neese F. The ORCA program system. WIREs Comput. Mol. Sci. 2012;2:73–78. [Google Scholar]

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This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Data Availability Statement

The authors declare that all relevant data supporting the findings of this work are available from the corresponding authors on request. The X-ray crystallographic coordinates for structures reported in this study have been deposited at the Cambridge Crystallographic Data Centre (CCDC), under deposition numbers 1959358-1959361. These data can be obtained free of charge from The Cambridge Crystallographic Data Centre via www.ccdc.cam.ac.uk/data_request/cif.


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