Table 3.

Nucleotide insertion and deletions (indels) within the nsP3 and 3′UTR of the 34-taxon BFV alignment. The genomic position, indel size and isolates with the reported indel are presented. The location of 3′UTR indels is expressed as the number of nucleotide (nt) residues it is from the terminal stop codon.

Location of Indel (Gene Region)	Size of Indel	Isolates With indel
5050–5076 (nsP3)	27nt deletion	SW94457
7440–7442 (C)	3nt insertion	K61404
3′ UTR
2nt post-terminal stop codon	25nt insertion	All G3, except MIDITully
40nt post-terminal stop codon	18nt deletion	KO376-1
57nt post-terminal stop codon	5nt deletion	SW77318, SW76323, DC45960, SW75325
115nt post-terminal stop codon	14nt deletion	PNG_BFV
165nt post-terminal stop codon	11nt deletion	EGR27629, SW10545, SW105961, MIDIB78
288nt post-terminal stop codon	58nt insertion	All G3 except MIDITully and MIDIB78