Correction to: The ISME Journal
10.1038/s41396-018-0312-9
Since publication of the original article, the authors realised that Supplementary Tables 2 and 3 were not uploaded with the rest of the supplementary information. These are now uploaded to the HTML version of the article and are produced below.
Supplementary Table 2.
| bin ID | Kraken classification (Taxonomic level) | CheckM classification (Taxonomic level) |
| 3 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 5 | Firmicutes (Phylum) | Bacteria (kingdom) |
| 6 | - (Root) | Clostridia (Class) |
| 10 | Firmicutes (Phylum) | Clostridiales (order) |
| 11 | - (Root) | Thermoanaerobacterales (Order) |
| 13 | Firmicutes (Phylum) | Clostridiales (order) |
| 14 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 16 | Firmicutes (Phylum) | Bacteria (kingdom) |
| 24 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 26 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 28 | Firmicutes (Phylum) | Bacteria (kingdom) |
| 29 | Firmicutes (Phylum) | Clostridiales (order) |
| 30 | Firmicutes (Phylum) | Clostridiales (order) |
| 33 | Firmicutes (Phylum) | Clostridiales (order) |
| 36 | Firmicutes (Phylum) | Clostridiales (order) |
| 37 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 39 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 43 | Firmicutes (Phylum) | Clostridiales (order) |
| 47 | - (Root) | Lachnospiraceae (Family) |
| 50 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 51 | Firmicutes (Phylum) | Clostridiales (order) |
| 52 | Firmicutes (Phylum) | Clostridiales (order) |
| 58 | Bacteria (kingdom) | Clostridia (Class) |
| 59 | Firmicutes (Phylum) | Clostridiales (order) |
| 65 | Firmicutes (Phylum) | Clostridiales (order) |
| 68 | Bacteria (kingdom) | Clostridia (Class) |
| 69 | Firmicutes (Phylum) | Clostridiales (order) |
| 79 | Firmicutes (Phylum) | Clostridiales (order) |
| 80 | Firmicutes (Phylum) | Bacteria (kingdom) |
| 82 | Firmicutes (Phylum) | Clostridiales (order) |
| 87 | Acutalibacter muris (Species) | Clostridiales (order) |
| 88 | Firmicutes (Phylum) | Clostridiales (order) |
| 90 | Bacteria (kingdom) | Clostridia (Class) |
| 91 | - (Root) | Clostridiales (order) |
| 95 | Firmicutes (Phylum) | Clostridiales (order) |
| 96 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 99 | Firmicutes (Phylum) | Bacteria (kingdom) |
| 100 | Burkholderiales bacterium YL45 (Species) | Proteobacteria (Phylum) |
| 101 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 104 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 108 | - (Root) | Lachnospiraceae (Family) |
| 116 | Firmicutes (Phylum) | Clostridiales (order) |
| 126 | Firmicutes (Phylum) | Clostridia (Class) |
| 129 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 132 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 133 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 135 | Firmicutes (Phylum) | Lachnospiraceae (Family) |
| 136 | - (Root) | Clostridiales (order) |
| 138 | Firmicutes (Phylum) | Clostridiales (order) |
| 140 | Firmicutes (Phylum) | Clostridiales (order) |
| 146 | - (Root) | Clostridiales (order) |
| 148 | - (Root) | Lachnospiraceae (Family) |
| 152 | Firmicutes (Phylum) | Bacteria (kingdom) |
| 154 | Bacteroides thetaiotaomicron (Species) | Bacteroides (Genera) |
| 157 | Firmicutes (Phylum) | Bacteria (kingdom) |
| 162 | Lactobacillus johnsonii (Species) | Lactobacillus (Genera) |
| 163 | Firmicutes (Phylum) | Clostridiales (order) |
| 164 | Bacteria (kingdom) | Clostridia (Class) |
| 171 | Firmicutes (Phylum) | Clostridiales (order) |
| 174 | Akkermansia muciniphila (Species) | Bacteria (kingdom) |
| 181 | - (Root) | Bacteria (kingdom) |
| 182 | Actinobacteria (Phylum) | Actinobacteria (Phylum) |
| 185 | Firmicutes (Phylum) | Clostridiales (order) |
| 187 | - (Root) | Clostridiales (order) |
| 192 | - (Root) | Clostridiales (order) |
Supplementary Table 3.
| KO | corrected p value | log2FoldEnriched | |
|---|---|---|---|
| NSG vs DONOR | |||
| K13653 | AraC family transcriptional regulator | 2.33E-220 | 6.085777164 |
| K03092 | RNA polymerase sigma-54 factor | 2.67E-205 | -7.270532708 |
| K01278 | dipeptidyl-peptidase 4 | 1.78E-198 | -12.59251039 |
| K01546 | K+-transporting ATPase ATPase A chain | 2.10E-193 | -9.99100789 |
| K03587 | cell division protein FtsI | 2.05E-179 | -10.2859436 |
| K07037 | uncharacterized protein | 1.37E-159 | -11.05262788 |
| K07263 | zinc protease | 9.63E-142 | -7.352007382 |
| K03332 | fructan beta-fructosidase | 6.60E-139 | -7.187537857 |
| K04518 | prephenate dehydratase | 6.60E-139 | -6.100008843 |
| K00912 | tetraacyldisaccharide 4'-kinase | 8.98E-135 | -10.25290754 |
| C57BL6/J vs DONOR | |||
| K07713 | two-component system, NtrC family, response regulator HydG | 6.94E-103 | -14.05876756 |
| K13653 | AraC family transcriptional regulator | 7.28E-85 | 5.687393659 |
| K07043 | uncharacterized protein | 1.47E-84 | -2.799784852 |
| K02121 | V/A-type H+/Na+-transporting ATPase subunit E | 2.42E-70 | -3.153204242 |
| K05516 | curved DNA-binding protein | 2.42E-70 | -6.581666247 |
| K06076 | long-chain fatty acid transport protein | 6.08E-64 | -12.29153314 |
| K03711 | Fur family transcriptional regulator, ferric uptake regulator | 1.91E-63 | -3.626934326 |
| K09790 | uncharacterized protein | 4.08E-63 | -3.264532972 |
| K01235 | alpha-glucuronidase | 1.70E-60 | -3.304631387 |
| K16153 | glycogen phosphorylase/synthase | 1.76E-60 | -9.970604097 |
Footnotes
The original article can be found online at 10.1038/s41396-018-0312-9.