Table 3.

Rank-ordering of the native complexes for targets in the CAPRI Score_set

Target	PDB ID	Number of decoys	PIZSA ranka	CIPS rankb
T29	2VDU	2016	78.87	93.33
T30	2REX	1119	96.69	96.13
T32	3BX1	599	99.67	45.74
T35	2W5F	499	100.00	23.25
T36	2W5F	309	100.00	3.24
T37	2W83	1495	99.93	76.86
T38	3FM8	888	96.62	80.47
T39	3FM8	1386	98.27	82.14
T40	3E8L	2144	84.79	61.42
T41	2WPT	1180	80.76	28.83
T46	3Q87	1640	81.89	85.17
T47	3U43	1051	85.44	96.48
T50	3R2X	1448	81.35	89.94
T53	4JW2	1400	85.00	94.71
T54	4JW3	1398	82.98	48.79

^a and

^{b -} % decoys that score worse than the native.