Investigation
|
Strain |
Dissulfurirhabdus thermomarina strain SH388T
|
Submitted to INSDC |
GenBank |
Investigation type |
Bacteria |
Project name |
JAATWC000000000 |
Geographic location (latitude and longitude) |
44°29.469′ N, 146°06.247′ E |
Geographic location (country and/or sea, region) |
Sea of Okhotsk, 250 m from the Kunashir Island shore (Sakhalin oblast, Russia) |
Collection date |
June 2013 |
Environment (biome) |
marine hydrothermal vent biome ENVO:01000030 |
Environment (feature) |
marine hydrothermal vent ENVO:01000122 |
Environment (material) |
marine hydrothermal vent chimney ENVO:01000129 |
Depth |
−12 m |
General features
|
Classification |
Domain Bacteria
|
|
Phylum Proteobacteria
|
|
Class Deltaproteobacteria
|
|
Not assigned to an Order |
|
Not assigned to a Family |
|
Genus Dissulfurirhabdus
|
|
Species Dissulfurirhabdus thermomarina
|
Gram stain |
Negative |
Cell shape |
short rods |
Motility |
Motile |
Growth temperature |
Thermophilic, optimum at 50 °C |
Relationship to oxygen |
Anaerobic |
Trophic level |
Chemolithoautotrophic |
Biotic relationship |
free-living |
Isolation and growth conditions |
DOI 10.1099/ijsem.0.001083 |
Sequencing
|
Sequencing technology |
Illumina MiSeq 2 × 150 bp |
Sequencing platform |
Molecular Research, MrDNA (Shallowater, TX, USA) |
Assembler |
Unicycler (version: 0.4.8-beta) |
Contig number |
36 |
N50
|
240,491 |
Genome coverage |
1384.362× |
Genome assembly NCBI |
ASM1297923v1 |
Assembly level |
Contigs |
Genomic features:
|
Genome size (bp) |
2,461,642 |
GC content (mol%) |
71.1 |
Protein coding genes |
2267 |
Number of RNAs |
50 |
tRNAs |
47 |
16S-23S-5S rRNAs |
1-1-1 |